Wall clock time and date at job start Mon Mar 30 2020 03:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50709 * 109.46906 * 2 1 4 4 C 1.38326 * 120.07813 * 269.97635 * 3 2 1 5 5 C 1.37914 * 120.38307 * 180.02562 * 4 3 2 6 6 C 1.39450 * 120.12217 * 0.02562 * 5 4 3 7 7 C 1.38991 * 118.92761 * 359.97438 * 6 5 4 8 8 C 1.37641 * 120.80834 * 359.97438 * 7 6 5 9 9 C 1.51141 * 106.31962 * 180.02562 * 7 6 5 10 10 H 1.08996 * 110.51266 * 118.78018 * 9 7 6 11 11 N 1.46899 * 110.51021 * 241.35622 * 9 7 6 12 12 C 1.51391 * 104.04654 * 359.97438 * 9 7 6 13 13 O 1.21281 * 126.44139 * 179.97438 * 12 9 7 14 14 N 1.34371 * 107.12166 * 359.97438 * 12 9 7 15 15 C 1.37136 * 123.86056 * 179.97438 * 14 12 9 16 16 H 1.07993 * 120.00461 * 213.82217 * 15 14 12 17 17 C 1.38891 * 119.99793 * 33.82405 * 15 14 12 18 18 N 1.31422 * 120.00138 * 19.88580 * 17 15 14 19 19 Si 1.86800 * 119.99951 * 199.88288 * 17 15 14 20 20 H 1.48502 * 109.47070 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.47384 * 120.00232 * 19 17 15 22 22 H 1.48502 * 109.47322 * 240.00628 * 19 17 15 23 23 H 1.08998 * 109.46700 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46969 * 299.99939 * 1 2 3 25 25 H 1.08998 * 109.47447 * 59.99547 * 1 2 3 26 26 H 1.08992 * 109.47137 * 240.00112 * 2 1 3 27 27 H 1.09002 * 109.47368 * 119.99947 * 2 1 3 28 28 H 1.07999 * 119.81089 * 0.02562 * 4 3 2 29 29 H 1.08003 * 119.94005 * 179.97438 * 5 4 3 30 30 H 1.07997 * 120.04059 * 179.97438 * 8 7 6 31 31 H 1.00900 * 110.99753 * 180.02562 * 11 9 7 32 32 H 1.00899 * 111.00084 * 303.95046 * 11 9 7 33 33 H 0.97004 * 119.99979 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2638 2.0744 -1.1970 5 6 2.7240 3.3745 -1.2043 6 6 2.9599 4.0401 -0.0019 7 6 2.7233 3.3723 1.1939 8 6 2.2631 2.0752 1.1978 9 6 3.0673 4.3447 2.2986 10 1 2.1908 4.5504 2.9131 11 7 4.1618 3.8186 3.1252 12 6 3.5099 5.5928 1.5650 13 8 3.8776 6.6327 2.0692 14 7 3.4188 5.3320 0.2500 15 6 3.7386 6.2343 -0.7320 16 1 3.1888 6.2385 -1.6614 17 6 4.7699 7.1427 -0.5311 18 7 5.6802 6.9108 0.3880 19 14 4.8630 8.6941 -1.5674 20 1 3.7273 8.7194 -2.5238 21 1 4.7915 9.8850 -0.6833 22 1 6.1438 8.7115 -2.3187 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 2.0832 1.5636 -2.1312 29 1 2.9028 3.8777 -2.1431 30 1 2.0838 1.5679 2.1343 31 1 4.3972 4.4622 3.8657 32 1 3.9296 2.9097 3.4968 33 1 6.4006 7.5451 0.5280 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042105563.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:46 Heat of formation + Delta-G solvation = 4.376294 kcal Electronic energy + Delta-G solvation = -17726.203777 eV Core-core repulsion = 14944.880584 eV Total energy + Delta-G solvation = -2781.323193 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.47120 -37.65174 -35.10002 -34.28810 -32.74065 -31.78982 -29.95641 -28.01955 -26.32568 -24.37670 -23.02096 -21.16394 -20.03980 -19.88278 -17.35626 -16.21101 -15.45784 -15.24283 -15.06565 -14.61322 -14.35482 -13.90899 -13.45063 -13.07856 -12.97094 -12.84098 -12.61803 -12.24094 -12.15488 -11.54294 -11.46665 -11.04938 -10.91482 -10.81483 -10.70474 -10.37293 -10.14340 -9.59943 -8.86425 -8.53727 -8.29869 -7.96136 -6.91086 -6.32989 -4.07943 1.94141 2.05827 3.18741 3.26575 3.30259 3.75256 4.09010 4.55563 4.73560 4.95767 5.14560 5.18810 5.23665 5.35638 5.40125 5.54272 5.60670 5.75558 5.82478 5.95031 6.01205 6.09229 6.30794 6.34421 6.51805 6.65872 6.98993 7.13934 7.20419 7.37170 7.46514 7.58667 7.84130 7.95749 8.59046 8.82204 9.23762 9.87428 10.70220 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.030334 B = 0.007411 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.830130 B = 3777.129654 C = 4475.725390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 C -0.156 4.156 4 C -0.075 4.075 5 C -0.157 4.157 6 C 0.182 3.818 7 C -0.170 4.170 8 C -0.053 4.053 9 C 0.102 3.898 10 H 0.064 0.936 11 N -0.815 5.815 12 C 0.506 3.494 13 O -0.486 6.486 14 N -0.377 5.377 15 C -0.372 4.372 16 H 0.096 0.904 17 C 0.059 3.941 18 N -0.811 5.811 19 Si 0.923 3.077 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.280 1.280 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.114 0.886 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.346 0.654 32 H 0.338 0.662 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.224 -10.505 0.534 12.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 C -0.158 4.158 4 C -0.094 4.094 5 C -0.179 4.179 6 C 0.078 3.922 7 C -0.174 4.174 8 C -0.072 4.072 9 C -0.013 4.013 10 H 0.082 0.918 11 N -0.347 5.347 12 C 0.294 3.706 13 O -0.359 6.359 14 N -0.082 5.082 15 C -0.497 4.497 16 H 0.113 0.887 17 C -0.153 4.153 18 N -0.442 5.442 19 Si 0.748 3.252 20 H -0.191 1.191 21 H -0.203 1.203 22 H -0.206 1.206 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.132 0.868 29 H 0.138 0.862 30 H 0.127 0.873 31 H 0.160 0.840 32 H 0.151 0.849 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.320 -9.586 0.247 11.484 hybrid contribution -0.426 0.774 0.282 0.927 sum -6.746 -8.812 0.529 11.111 Atomic orbital electron populations 1.21773 0.95754 1.00706 1.02079 1.20292 0.95293 0.93193 1.01811 1.19338 1.07312 0.96327 0.92791 1.20546 0.98255 0.93673 0.96953 1.20238 1.06450 0.94933 0.96243 1.18658 0.93723 0.85748 0.94042 1.19666 1.08330 0.95460 0.93974 1.19802 0.98134 0.92214 0.97032 1.20684 0.93011 0.93881 0.93695 0.91806 1.58374 1.41330 1.06785 1.28231 1.19822 0.80470 0.87917 0.82416 1.90563 1.44814 1.29064 1.71463 1.41473 1.52395 1.07769 1.06531 1.19302 1.18094 1.13530 0.98821 0.88673 1.25327 0.93554 0.99579 0.96887 1.69983 1.09596 1.34354 1.30240 0.85977 0.78212 0.81648 0.79352 1.19115 1.20305 1.20608 0.93252 0.92829 0.92730 0.91824 0.91927 0.86759 0.86234 0.87283 0.83992 0.84912 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.89 37.16 0.37 -1.17 16 2 C -0.07 -0.81 6.07 -27.88 -0.17 -0.98 16 3 C -0.16 -2.42 5.14 -104.52 -0.54 -2.95 16 4 C -0.08 -1.25 9.68 -39.67 -0.38 -1.63 16 5 C -0.16 -3.14 9.80 -39.25 -0.38 -3.53 16 6 C 0.18 4.20 6.64 -83.69 -0.56 3.65 16 7 C -0.17 -3.46 5.94 -104.34 -0.62 -4.08 16 8 C -0.05 -0.88 9.70 -39.73 -0.39 -1.27 16 9 C 0.10 2.13 4.12 -69.46 -0.29 1.85 16 10 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 11 N -0.82 -15.25 9.29 -6.17 -0.06 -15.31 16 12 C 0.51 13.54 7.14 -10.83 -0.08 13.46 16 13 O -0.49 -14.44 15.34 5.56 0.09 -14.35 16 14 N -0.38 -10.12 2.80 -58.80 -0.16 -10.28 16 15 C -0.37 -10.38 9.52 -14.94 -0.14 -10.52 16 16 H 0.10 2.51 7.91 -52.49 -0.41 2.09 16 17 C 0.06 1.67 4.77 -17.49 -0.08 1.59 16 18 N -0.81 -24.27 11.23 55.49 0.62 -23.65 16 19 Si 0.92 21.33 29.60 -169.99 -5.03 16.30 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 27 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 28 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 29 H 0.12 2.34 8.04 -52.48 -0.42 1.92 16 30 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 31 H 0.35 6.15 9.08 -39.29 -0.36 5.79 16 32 H 0.34 5.06 9.01 -39.29 -0.35 4.71 16 33 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 285.17 15.07 4.30 4.30 Total: -1.00 -32.82 285.17 -7.56 -40.38 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -4.06 Total: 8.20 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -3.26 Total: -5.59 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.40 Total: -49.24 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.09 Total: -14.35 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.82 -7.56 -40.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042105563.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.755 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds