Wall clock time and date at job start Mon Mar 30 2020 03:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50709 * 109.46906 * 2 1 4 4 C 1.38326 * 120.07813 * 269.97635 * 3 2 1 5 5 C 1.37914 * 120.38307 * 180.02562 * 4 3 2 6 6 C 1.39450 * 120.12217 * 0.02562 * 5 4 3 7 7 C 1.38991 * 118.92761 * 359.97438 * 6 5 4 8 8 C 1.37641 * 120.80834 * 359.97438 * 7 6 5 9 9 C 1.51141 * 106.31962 * 180.02562 * 7 6 5 10 10 H 1.08996 * 110.51266 * 118.78018 * 9 7 6 11 11 N 1.46899 * 110.51021 * 241.35622 * 9 7 6 12 12 C 1.51391 * 104.04654 * 359.97438 * 9 7 6 13 13 O 1.21281 * 126.44139 * 179.97438 * 12 9 7 14 14 N 1.34371 * 107.12166 * 359.97438 * 12 9 7 15 15 C 1.37136 * 123.86056 * 179.97438 * 14 12 9 16 16 H 1.07993 * 120.00461 * 213.82217 * 15 14 12 17 17 C 1.38891 * 119.99793 * 33.82405 * 15 14 12 18 18 N 1.31422 * 120.00138 * 19.88580 * 17 15 14 19 19 Si 1.86800 * 119.99951 * 199.88288 * 17 15 14 20 20 H 1.48502 * 109.47070 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.47384 * 120.00232 * 19 17 15 22 22 H 1.48502 * 109.47322 * 240.00628 * 19 17 15 23 23 H 1.08998 * 109.46700 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46969 * 299.99939 * 1 2 3 25 25 H 1.08998 * 109.47447 * 59.99547 * 1 2 3 26 26 H 1.08992 * 109.47137 * 240.00112 * 2 1 3 27 27 H 1.09002 * 109.47368 * 119.99947 * 2 1 3 28 28 H 1.07999 * 119.81089 * 0.02562 * 4 3 2 29 29 H 1.08003 * 119.94005 * 179.97438 * 5 4 3 30 30 H 1.07997 * 120.04059 * 179.97438 * 8 7 6 31 31 H 1.00900 * 110.99753 * 180.02562 * 11 9 7 32 32 H 1.00899 * 111.00084 * 303.95046 * 11 9 7 33 33 H 0.97004 * 119.99979 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2638 2.0744 -1.1970 5 6 2.7240 3.3745 -1.2043 6 6 2.9599 4.0401 -0.0019 7 6 2.7233 3.3723 1.1939 8 6 2.2631 2.0752 1.1978 9 6 3.0673 4.3447 2.2986 10 1 2.1908 4.5504 2.9131 11 7 4.1618 3.8186 3.1252 12 6 3.5099 5.5928 1.5650 13 8 3.8776 6.6327 2.0692 14 7 3.4188 5.3320 0.2500 15 6 3.7386 6.2343 -0.7320 16 1 3.1888 6.2385 -1.6614 17 6 4.7699 7.1427 -0.5311 18 7 5.6802 6.9108 0.3880 19 14 4.8630 8.6941 -1.5674 20 1 3.7273 8.7194 -2.5238 21 1 4.7915 9.8850 -0.6833 22 1 6.1438 8.7115 -2.3187 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 2.0832 1.5636 -2.1312 29 1 2.9028 3.8777 -2.1431 30 1 2.0838 1.5679 2.1343 31 1 4.3972 4.4622 3.8657 32 1 3.9296 2.9097 3.4968 33 1 6.4006 7.5451 0.5280 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042105563.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:46 Heat of formation + Delta-G solvation = -18.657607 kcal Electronic energy + Delta-G solvation = -17727.202602 eV Core-core repulsion = 14944.880584 eV Total energy + Delta-G solvation = -2782.322018 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.16306 -39.24694 -36.85202 -35.99006 -34.28697 -33.43122 -31.44468 -29.53076 -27.97815 -26.16048 -24.25070 -22.66865 -21.80787 -21.36823 -19.17063 -17.91672 -17.23317 -16.94803 -16.61803 -16.31652 -15.74444 -15.36469 -15.01942 -14.63556 -14.46501 -14.15129 -14.11967 -13.70710 -13.67011 -13.32741 -12.93173 -12.87092 -12.64189 -12.15386 -12.00179 -11.77212 -11.48564 -11.39302 -10.73373 -10.29843 -9.86919 -9.51448 -8.70261 -8.33695 -6.19697 0.42017 0.58149 1.32048 1.38065 1.50099 1.99867 2.24189 2.83020 2.94155 3.26870 3.48556 3.62890 3.74983 4.08347 4.16523 4.27030 4.44354 4.53343 4.71013 4.76515 4.81737 5.06486 5.14839 5.23588 5.25584 5.32009 5.54167 5.56447 5.63163 5.83116 5.88203 6.02110 6.22004 6.56377 6.63531 6.86905 7.25837 7.94070 8.64833 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.030334 B = 0.007411 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.830130 B = 3777.129654 C = 4475.725390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.068 4.068 3 C -0.129 4.129 4 C -0.074 4.074 5 C -0.165 4.165 6 C 0.128 3.872 7 C -0.168 4.168 8 C -0.052 4.052 9 C 0.113 3.887 10 H 0.085 0.915 11 N -0.822 5.822 12 C 0.478 3.522 13 O -0.542 6.542 14 N -0.401 5.401 15 C -0.391 4.391 16 H 0.098 0.902 17 C 0.005 3.995 18 N -0.857 5.857 19 Si 0.992 3.008 20 H -0.251 1.251 21 H -0.285 1.285 22 H -0.268 1.268 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.150 0.850 29 H 0.112 0.888 30 H 0.147 0.853 31 H 0.350 0.650 32 H 0.361 0.639 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.834 -13.755 -0.065 16.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 C -0.131 4.131 4 C -0.092 4.092 5 C -0.186 4.186 6 C 0.028 3.972 7 C -0.172 4.172 8 C -0.071 4.071 9 C -0.001 4.001 10 H 0.103 0.897 11 N -0.357 5.357 12 C 0.268 3.732 13 O -0.420 6.420 14 N -0.109 5.109 15 C -0.517 4.517 16 H 0.115 0.885 17 C -0.203 4.203 18 N -0.490 5.490 19 Si 0.814 3.186 20 H -0.174 1.174 21 H -0.211 1.211 22 H -0.193 1.193 23 H 0.090 0.910 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.168 0.832 29 H 0.130 0.870 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.177 0.823 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.976 -12.940 -0.386 15.205 hybrid contribution -0.065 1.461 0.411 1.519 sum -8.041 -11.479 0.024 14.015 Atomic orbital electron populations 1.21756 0.94493 1.02199 1.01753 1.20424 0.96172 0.90259 1.03683 1.19955 1.03358 0.97978 0.91762 1.20962 0.96871 0.92149 0.99238 1.20488 1.06615 0.96383 0.95158 1.19110 0.96249 0.85486 0.96365 1.19869 1.08383 0.96539 0.92420 1.20253 0.96815 0.90638 0.99356 1.20448 0.93909 0.91728 0.94005 0.89727 1.58267 1.40832 1.08091 1.28548 1.20756 0.80229 0.89175 0.83088 1.90488 1.47783 1.31318 1.72412 1.41647 1.53450 1.09279 1.06479 1.19643 1.17994 1.14651 0.99451 0.88477 1.26364 0.93024 1.02720 0.98192 1.70111 1.10590 1.35453 1.32808 0.84936 0.79085 0.76817 0.77745 1.17415 1.21061 1.19308 0.90963 0.93163 0.93164 0.90109 0.90098 0.83192 0.86972 0.83513 0.83562 0.82311 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.89 71.98 0.71 -1.57 16 2 C -0.07 -1.21 6.07 29.85 0.18 -1.03 16 3 C -0.13 -3.42 5.14 -19.80 -0.10 -3.52 16 4 C -0.07 -2.19 9.68 22.21 0.21 -1.98 16 5 C -0.16 -6.52 9.80 22.49 0.22 -6.30 16 6 C 0.13 5.96 6.64 38.41 0.26 6.22 16 7 C -0.17 -6.64 5.94 -19.69 -0.12 -6.76 16 8 C -0.05 -1.54 9.70 22.17 0.22 -1.32 16 9 C 0.11 4.77 4.12 43.78 0.18 4.95 16 10 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 11 N -0.82 -30.34 9.29 -173.44 -1.61 -31.95 16 12 C 0.48 26.77 7.14 87.94 0.63 27.39 16 13 O -0.54 -34.25 15.34 -3.03 -0.05 -34.30 16 14 N -0.40 -22.48 2.80 -458.55 -1.28 -23.77 16 15 C -0.39 -22.90 9.52 84.02 0.80 -22.10 16 16 H 0.10 5.36 7.91 -2.91 -0.02 5.33 16 17 C 0.00 0.27 4.77 84.91 0.40 0.68 16 18 N -0.86 -54.09 11.23 21.65 0.24 -53.85 16 19 Si 0.99 45.55 29.60 68.60 2.03 47.58 16 20 H -0.25 -10.67 7.11 99.48 0.71 -9.96 16 21 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.08 1.25 8.09 -2.39 -0.02 1.23 16 27 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 28 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 29 H 0.11 4.47 8.04 -2.91 -0.02 4.45 16 30 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 31 H 0.35 12.54 9.08 -89.69 -0.81 11.73 16 32 H 0.36 10.02 9.01 -89.69 -0.81 9.21 16 33 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -76.86 285.17 2.44 -74.42 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -0.48 Total: 27.21 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 3.59 Total: -5.35 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -2.65 Total: -109.57 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.05 Total: -34.30 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -76.86 2.44 -74.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042105563.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.763 kcal (2) G-P(sol) polarization free energy of solvation -76.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds