Wall clock time and date at job start Mon Mar 30 2020 03:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38466 * 120.04657 * 2 1 4 4 C 1.38278 * 119.84810 * 179.97438 * 3 2 1 5 5 C 1.37960 * 120.38348 * 359.97438 * 4 3 2 6 6 C 1.50691 * 119.94018 * 180.02562 * 5 4 3 7 7 C 1.39407 * 120.11655 * 0.03805 * 5 4 3 8 8 C 1.37602 * 120.04224 * 179.97438 * 2 1 3 9 9 C 1.51140 * 132.87549 * 0.03023 * 8 2 1 10 10 H 1.09000 * 110.51596 * 298.63238 * 9 8 2 11 11 N 1.46898 * 110.51454 * 61.35836 * 9 8 2 12 12 C 1.51403 * 104.04689 * 179.78966 * 9 8 2 13 13 O 1.21281 * 126.43637 * 180.25616 * 12 9 8 14 14 N 1.34364 * 107.12523 * 0.34727 * 12 9 8 15 15 C 1.37145 * 123.85784 * 179.89279 * 14 12 9 16 16 H 1.08003 * 119.99700 * 140.97882 * 15 14 12 17 17 C 1.38887 * 120.00073 * 320.97384 * 15 14 12 18 18 N 1.31419 * 120.00238 * 347.01673 * 17 15 14 19 19 Si 1.86796 * 119.99903 * 166.73645 * 17 15 14 20 20 H 1.48503 * 109.47497 * 60.00189 * 19 17 15 21 21 H 1.48499 * 109.47150 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47285 * 300.00156 * 19 17 15 23 23 H 1.08996 * 109.47209 * 270.02900 * 1 2 3 24 24 H 1.09002 * 109.46459 * 30.03213 * 1 2 3 25 25 H 1.09000 * 109.47079 * 150.02576 * 1 2 3 26 26 H 1.08005 * 120.07202 * 359.94890 * 3 2 1 27 27 H 1.08004 * 119.81441 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.46837 * 264.22687 * 6 5 4 29 29 H 1.09001 * 109.47779 * 24.22477 * 6 5 4 30 30 H 1.08999 * 109.47493 * 144.22956 * 6 5 4 31 31 H 1.00899 * 110.99856 * 180.02562 * 11 9 8 32 32 H 1.00904 * 110.99631 * 303.94638 * 11 9 8 33 33 H 0.96996 * 120.00326 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2003 1.1986 0.0000 4 6 3.5830 1.1938 0.0005 5 6 4.2767 0.0013 0.0016 6 6 5.7836 0.0077 0.0028 7 6 3.5860 -1.2097 0.0013 8 6 2.1958 -1.1912 0.0005 9 6 1.7519 -2.6359 0.0006 10 1 1.1717 -2.8572 0.8964 11 7 0.9708 -2.9345 -1.2072 12 6 3.0479 -3.4186 -0.0041 13 8 3.1601 -4.6262 -0.0098 14 7 4.0504 -2.5240 0.0015 15 6 5.3788 -2.8650 0.0016 16 1 6.0833 -2.2926 -0.5837 17 6 5.8181 -3.9462 0.7545 18 7 5.0279 -4.4829 1.6571 19 14 7.5293 -4.6427 0.4787 20 1 8.5413 -3.5880 0.7412 21 1 7.7534 -5.7848 1.4009 22 1 7.6535 -5.1093 -0.9257 23 1 -0.3633 0.0005 1.0276 24 1 -0.3632 0.8897 -0.5144 25 1 -0.3633 -0.8902 -0.5134 26 1 1.6622 2.1351 -0.0008 27 1 4.1233 2.1290 0.0001 28 1 6.1481 -0.0946 -1.0194 29 1 6.1427 0.9466 0.4243 30 1 6.1501 -0.8243 0.6041 31 1 0.6702 -3.8976 -1.2144 32 1 0.1832 -2.3095 -1.2920 33 1 5.3348 -5.2378 2.1832 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042108431.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:14 Heat of formation + Delta-G solvation = 7.358486 kcal Electronic energy + Delta-G solvation = -18214.259755 eV Core-core repulsion = 15433.065880 eV Total energy + Delta-G solvation = -2781.193875 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.58173 -37.48658 -34.99212 -34.43865 -32.63982 -31.79127 -29.09324 -28.74505 -25.80093 -24.93678 -23.64168 -21.22052 -20.19389 -19.46947 -16.88952 -16.33384 -15.55331 -15.07661 -14.87236 -14.61835 -14.22312 -13.74311 -13.35678 -13.11632 -12.94774 -12.54972 -12.38492 -12.23712 -12.06823 -11.66114 -11.28910 -11.13517 -11.06379 -10.90594 -10.48212 -10.39877 -10.20980 -9.45863 -8.85987 -8.53000 -8.25958 -7.83313 -6.85401 -6.33780 -4.11618 1.96393 2.04877 3.18256 3.24836 3.26293 3.79149 4.06572 4.61037 4.65063 5.02480 5.07580 5.19577 5.39210 5.41901 5.45753 5.67956 5.82649 5.86897 6.01268 6.04104 6.08729 6.24381 6.42197 6.56659 6.63819 6.91077 7.08489 7.15183 7.29946 7.37216 7.40991 7.61205 7.76539 8.00174 8.61111 8.82256 9.22193 9.89067 10.70921 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025772 B = 0.009834 C = 0.007503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.178369 B = 2846.580073 C = 3731.018826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.035 4.035 3 C -0.184 4.184 4 C -0.081 4.081 5 C -0.126 4.126 6 C -0.111 4.111 7 C 0.189 3.811 8 C -0.170 4.170 9 C 0.102 3.898 10 H 0.066 0.934 11 N -0.820 5.820 12 C 0.514 3.486 13 O -0.484 6.484 14 N -0.379 5.379 15 C -0.363 4.363 16 H 0.100 0.900 17 C 0.056 3.944 18 N -0.830 5.830 19 Si 0.925 3.075 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.271 1.271 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.345 0.655 32 H 0.339 0.661 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.514 8.755 -1.751 10.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.036 4.036 3 C -0.204 4.204 4 C -0.100 4.100 5 C -0.129 4.129 6 C -0.168 4.168 7 C 0.086 3.914 8 C -0.174 4.174 9 C -0.012 4.012 10 H 0.084 0.916 11 N -0.354 5.354 12 C 0.301 3.699 13 O -0.357 6.357 14 N -0.084 5.084 15 C -0.490 4.490 16 H 0.117 0.883 17 C -0.155 4.155 18 N -0.462 5.462 19 Si 0.751 3.249 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.196 1.196 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.131 0.869 27 H 0.133 0.867 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.159 0.841 32 H 0.154 0.846 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.684 7.880 -1.983 9.378 hybrid contribution 0.000 -0.526 0.704 0.879 sum -4.683 7.353 -1.279 8.811 Atomic orbital electron populations 1.20758 0.92286 1.01928 1.01672 1.18791 0.94735 0.91343 0.98746 1.20502 0.93885 0.96197 1.09777 1.20581 0.93852 0.96202 0.99402 1.19074 0.96064 0.90265 1.07516 1.20887 0.91473 1.02458 1.01937 1.18509 0.91977 0.87050 0.93912 1.19454 0.93408 0.93269 1.11254 1.20640 0.95788 0.92284 0.92509 0.91620 1.58548 1.28622 1.08850 1.39393 1.19793 0.84596 0.86659 0.78845 1.90564 1.84982 1.12369 1.47813 1.41361 1.06822 1.01394 1.58810 1.19362 0.82319 1.17222 1.30048 0.88282 1.25400 0.99372 0.97022 0.93681 1.69872 1.36653 1.21565 1.18112 0.86053 0.81509 0.78678 0.78699 1.19633 1.20760 1.19587 0.91687 0.91729 0.92295 0.86881 0.86685 0.92562 0.93389 0.89003 0.84110 0.84599 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.92 36.00 0.36 -1.05 16 2 C -0.04 -0.60 5.87 -104.77 -0.61 -1.22 16 3 C -0.18 -2.95 9.73 -39.48 -0.38 -3.33 16 4 C -0.08 -1.39 9.64 -39.67 -0.38 -1.77 16 5 C -0.13 -2.55 5.91 -104.29 -0.62 -3.16 16 6 C -0.11 -2.08 8.58 36.00 0.31 -1.77 16 7 C 0.19 4.39 6.61 -83.69 -0.55 3.84 16 8 C -0.17 -3.51 5.73 -104.35 -0.60 -4.11 16 9 C 0.10 2.16 3.88 -69.46 -0.27 1.90 16 10 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 11 N -0.82 -14.63 9.29 -6.17 -0.06 -14.69 16 12 C 0.51 13.75 7.07 -10.82 -0.08 13.67 16 13 O -0.48 -14.40 15.54 5.56 0.09 -14.32 16 14 N -0.38 -10.07 2.77 -58.79 -0.16 -10.24 16 15 C -0.36 -9.90 7.65 -14.93 -0.11 -10.01 16 16 H 0.10 2.53 6.11 -52.48 -0.32 2.21 16 17 C 0.06 1.55 4.93 -17.49 -0.09 1.47 16 18 N -0.83 -24.32 11.21 55.49 0.62 -23.69 16 19 Si 0.92 21.07 29.57 -169.99 -5.03 16.05 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 25 H 0.06 0.72 5.40 -51.93 -0.28 0.44 16 26 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 27 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 28 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 29 H 0.05 0.75 8.04 -51.93 -0.42 0.33 16 30 H 0.09 1.95 5.79 -51.93 -0.30 1.65 16 31 H 0.35 5.77 9.08 -39.29 -0.36 5.41 16 32 H 0.34 4.92 6.47 -39.29 -0.25 4.67 16 33 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 272.96 15.07 4.11 4.11 Total: -1.00 -32.18 272.96 -7.05 -39.23 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -3.59 Total: 9.10 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -3.03 Total: -5.55 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.40 Total: -48.62 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: 0.09 Total: -14.32 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.18 -7.05 -39.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042108431.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.586 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds