Wall clock time and date at job start Mon Mar 30 2020 03:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38466 * 120.04657 * 2 1 4 4 C 1.38278 * 119.84810 * 179.97438 * 3 2 1 5 5 C 1.37960 * 120.38348 * 359.97438 * 4 3 2 6 6 C 1.50691 * 119.94018 * 180.02562 * 5 4 3 7 7 C 1.39407 * 120.11655 * 0.03805 * 5 4 3 8 8 C 1.37602 * 120.04224 * 179.97438 * 2 1 3 9 9 C 1.51140 * 132.87549 * 0.03023 * 8 2 1 10 10 H 1.09000 * 110.51596 * 298.63238 * 9 8 2 11 11 N 1.46898 * 110.51454 * 61.35836 * 9 8 2 12 12 C 1.51403 * 104.04689 * 179.78966 * 9 8 2 13 13 O 1.21281 * 126.43637 * 180.25616 * 12 9 8 14 14 N 1.34364 * 107.12523 * 0.34727 * 12 9 8 15 15 C 1.37145 * 123.85784 * 179.89279 * 14 12 9 16 16 H 1.08003 * 119.99700 * 140.97882 * 15 14 12 17 17 C 1.38887 * 120.00073 * 320.97384 * 15 14 12 18 18 N 1.31419 * 120.00238 * 347.01673 * 17 15 14 19 19 Si 1.86796 * 119.99903 * 166.73645 * 17 15 14 20 20 H 1.48503 * 109.47497 * 60.00189 * 19 17 15 21 21 H 1.48499 * 109.47150 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47285 * 300.00156 * 19 17 15 23 23 H 1.08996 * 109.47209 * 270.02900 * 1 2 3 24 24 H 1.09002 * 109.46459 * 30.03213 * 1 2 3 25 25 H 1.09000 * 109.47079 * 150.02576 * 1 2 3 26 26 H 1.08005 * 120.07202 * 359.94890 * 3 2 1 27 27 H 1.08004 * 119.81441 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.46837 * 264.22687 * 6 5 4 29 29 H 1.09001 * 109.47779 * 24.22477 * 6 5 4 30 30 H 1.08999 * 109.47493 * 144.22956 * 6 5 4 31 31 H 1.00899 * 110.99856 * 180.02562 * 11 9 8 32 32 H 1.00904 * 110.99631 * 303.94638 * 11 9 8 33 33 H 0.96996 * 120.00326 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2003 1.1986 0.0000 4 6 3.5830 1.1938 0.0005 5 6 4.2767 0.0013 0.0016 6 6 5.7836 0.0077 0.0028 7 6 3.5860 -1.2097 0.0013 8 6 2.1958 -1.1912 0.0005 9 6 1.7519 -2.6359 0.0006 10 1 1.1717 -2.8572 0.8964 11 7 0.9708 -2.9345 -1.2072 12 6 3.0479 -3.4186 -0.0041 13 8 3.1601 -4.6262 -0.0098 14 7 4.0504 -2.5240 0.0015 15 6 5.3788 -2.8650 0.0016 16 1 6.0833 -2.2926 -0.5837 17 6 5.8181 -3.9462 0.7545 18 7 5.0279 -4.4829 1.6571 19 14 7.5293 -4.6427 0.4787 20 1 8.5413 -3.5880 0.7412 21 1 7.7534 -5.7848 1.4009 22 1 7.6535 -5.1093 -0.9257 23 1 -0.3633 0.0005 1.0276 24 1 -0.3632 0.8897 -0.5144 25 1 -0.3633 -0.8902 -0.5134 26 1 1.6622 2.1351 -0.0008 27 1 4.1233 2.1290 0.0001 28 1 6.1481 -0.0946 -1.0194 29 1 6.1427 0.9466 0.4243 30 1 6.1501 -0.8243 0.6041 31 1 0.6702 -3.8976 -1.2144 32 1 0.1832 -2.3095 -1.2920 33 1 5.3348 -5.2378 2.1832 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042108431.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:14 Heat of formation + Delta-G solvation = -15.497433 kcal Electronic energy + Delta-G solvation = -18215.250862 eV Core-core repulsion = 15433.065880 eV Total energy + Delta-G solvation = -2782.184982 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.25413 -39.15862 -36.73947 -36.12348 -34.38368 -33.40026 -30.65259 -30.17468 -27.50147 -26.61870 -25.12298 -22.78232 -21.91767 -21.16209 -18.70173 -17.97178 -17.29104 -16.69348 -16.65572 -16.23143 -15.65896 -15.42788 -14.84709 -14.73568 -14.48873 -14.06058 -13.93731 -13.75602 -13.42062 -13.35221 -12.97005 -12.90935 -12.53082 -12.38801 -12.20298 -12.04542 -11.66585 -11.24565 -10.70237 -10.35112 -9.85227 -9.27757 -8.64936 -8.31329 -6.18989 0.47115 0.56212 1.32902 1.40430 1.46728 2.05450 2.23084 2.84909 2.93856 3.22986 3.53035 3.62910 3.73714 4.09365 4.18644 4.25649 4.50617 4.55199 4.75129 4.88764 4.91822 4.93341 5.00030 5.09544 5.28063 5.29870 5.46506 5.64624 5.74859 5.83436 5.91967 5.97727 6.28892 6.51172 6.67625 6.88813 7.26534 7.96571 8.68638 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025772 B = 0.009834 C = 0.007503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.178369 B = 2846.580073 C = 3731.018826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.038 4.038 3 C -0.161 4.161 4 C -0.078 4.078 5 C -0.142 4.142 6 C -0.106 4.106 7 C 0.134 3.866 8 C -0.176 4.176 9 C 0.116 3.884 10 H 0.069 0.931 11 N -0.818 5.818 12 C 0.484 3.516 13 O -0.542 6.542 14 N -0.401 5.401 15 C -0.374 4.374 16 H 0.105 0.895 17 C 0.000 4.000 18 N -0.874 5.874 19 Si 0.990 3.010 20 H -0.247 1.247 21 H -0.282 1.282 22 H -0.273 1.273 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.062 0.938 26 H 0.160 0.840 27 H 0.155 0.845 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.351 0.649 32 H 0.359 0.641 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.525 12.440 -2.343 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.039 4.039 3 C -0.180 4.180 4 C -0.097 4.097 5 C -0.145 4.145 6 C -0.163 4.163 7 C 0.035 3.965 8 C -0.180 4.180 9 C 0.002 3.998 10 H 0.086 0.914 11 N -0.355 5.355 12 C 0.273 3.727 13 O -0.419 6.419 14 N -0.108 5.108 15 C -0.500 4.500 16 H 0.122 0.878 17 C -0.206 4.206 18 N -0.508 5.508 19 Si 0.812 3.188 20 H -0.171 1.171 21 H -0.208 1.208 22 H -0.198 1.198 23 H 0.097 0.903 24 H 0.114 0.886 25 H 0.080 0.920 26 H 0.178 0.822 27 H 0.172 0.828 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.165 0.835 32 H 0.178 0.822 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.720 11.675 -2.590 13.256 hybrid contribution 0.199 -1.379 0.843 1.629 sum -5.521 10.295 -1.747 11.812 Atomic orbital electron populations 1.20858 0.88896 1.03701 1.03101 1.19352 0.97272 0.90230 0.97018 1.21145 0.93722 0.97540 1.05612 1.21060 0.94722 0.96264 0.97630 1.19508 0.96926 0.90540 1.07518 1.20808 0.91020 1.02827 1.01649 1.19006 0.93720 0.86569 0.97233 1.19707 0.92667 0.93973 1.11654 1.20321 0.93639 0.92152 0.93698 0.91374 1.58445 1.29442 1.09857 1.37760 1.20694 0.86780 0.86584 0.78599 1.90487 1.86196 1.14361 1.50894 1.41536 1.06565 1.03048 1.59658 1.19708 0.83378 1.17358 1.29575 0.87791 1.26403 1.03381 0.97421 0.93368 1.70022 1.38752 1.22274 1.19758 0.85072 0.77297 0.78326 0.78120 1.17124 1.20775 1.19810 0.90295 0.88607 0.91966 0.82208 0.82788 0.92383 0.89944 0.92383 0.83518 0.82232 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 9.92 71.23 0.71 -1.56 16 2 C -0.04 -1.15 5.87 -19.96 -0.12 -1.26 16 3 C -0.16 -4.27 9.73 22.33 0.22 -4.05 16 4 C -0.08 -2.32 9.64 22.21 0.21 -2.10 16 5 C -0.14 -5.54 5.91 -19.65 -0.12 -5.66 16 6 C -0.11 -3.89 8.58 71.23 0.61 -3.28 16 7 C 0.13 6.30 6.61 38.41 0.25 6.56 16 8 C -0.18 -7.11 5.73 -19.69 -0.11 -7.23 16 9 C 0.12 5.01 3.88 43.79 0.17 5.18 16 10 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 11 N -0.82 -28.93 9.29 -173.42 -1.61 -30.54 16 12 C 0.48 27.32 7.07 87.95 0.62 27.94 16 13 O -0.54 -34.46 15.54 -3.03 -0.05 -34.51 16 14 N -0.40 -22.30 2.77 -458.53 -1.27 -23.57 16 15 C -0.37 -21.35 7.65 84.02 0.64 -20.70 16 16 H 0.10 5.56 6.11 -2.91 -0.02 5.54 16 17 C 0.00 0.00 4.93 84.91 0.42 0.42 16 18 N -0.87 -54.35 11.21 21.65 0.24 -54.11 16 19 Si 0.99 44.98 29.57 68.60 2.03 47.01 16 20 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.10 1.45 8.09 -2.39 -0.02 1.43 16 25 H 0.06 1.26 5.40 -2.39 -0.01 1.25 16 26 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 27 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 28 H 0.06 2.05 8.04 -2.39 -0.02 2.03 16 29 H 0.08 2.35 8.04 -2.39 -0.02 2.33 16 30 H 0.06 2.52 5.79 -2.39 -0.01 2.50 16 31 H 0.35 11.86 9.08 -89.70 -0.81 11.05 16 32 H 0.36 9.77 6.47 -89.69 -0.58 9.19 16 33 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -76.27 272.96 2.62 -73.65 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.23 Total: 27.80 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 3.51 Total: -5.75 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -2.64 Total: -108.21 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.05 Total: -34.51 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -76.27 2.62 -73.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042108431.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.156 kcal (2) G-P(sol) polarization free energy of solvation -76.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds