Wall clock time and date at job start Mon Mar 30 2020 03:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38073 * 119.95768 * 2 1 4 4 C 1.39055 * 119.90880 * 180.23193 * 3 2 1 5 5 N 1.39296 * 120.09035 * 179.74421 * 4 3 2 6 6 C 1.36842 * 120.00486 * 179.72454 * 5 4 3 7 7 H 1.08008 * 119.99615 * 339.64113 * 6 5 4 8 8 C 1.38791 * 120.00583 * 159.64241 * 6 5 4 9 9 N 1.31597 * 119.99738 * 341.15979 * 8 6 5 10 10 Si 1.86800 * 120.00009 * 161.16023 * 8 6 5 11 11 H 1.48496 * 109.47492 * 60.00343 * 10 8 6 12 12 H 1.48510 * 109.46940 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47235 * 299.99918 * 10 8 6 14 14 C 1.46502 * 119.99857 * 359.71579 * 5 4 3 15 15 C 1.47190 * 109.47566 * 276.11898 * 14 5 4 16 16 N 5.13300 * 105.73008 * 330.06678 * 2 1 3 17 17 C 1.39098 * 119.82028 * 359.46419 * 4 3 2 18 18 C 1.38027 * 119.91468 * 0.27958 * 17 4 3 19 19 C 1.38306 * 119.94939 * 179.71817 * 2 1 3 20 20 C 1.50698 * 119.91503 * 0.02562 * 19 2 1 21 21 O 1.42903 * 109.47194 * 180.02562 * 20 19 2 22 22 H 1.08997 * 109.47509 * 270.28492 * 1 2 3 23 23 H 1.08999 * 109.46460 * 30.27972 * 1 2 3 24 24 H 1.09005 * 109.47226 * 150.28033 * 1 2 3 25 25 H 1.08007 * 120.04242 * 359.97048 * 3 2 1 26 26 H 0.96998 * 119.99997 * 180.02562 * 9 8 6 27 27 H 1.08998 * 109.47000 * 156.11176 * 14 5 4 28 28 H 1.09009 * 109.46707 * 36.12164 * 14 5 4 29 29 H 1.08008 * 120.04615 * 180.30041 * 17 4 3 30 30 H 1.08003 * 119.95944 * 180.02562 * 18 17 4 31 31 H 1.08994 * 109.47514 * 300.02579 * 20 19 2 32 32 H 1.09001 * 109.46862 * 60.02433 * 20 19 2 33 33 H 0.96698 * 113.99807 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1965 1.1963 0.0000 4 6 3.5871 1.1951 -0.0049 5 7 4.2865 2.3997 -0.0103 6 6 5.6549 2.3965 -0.0094 7 1 6.1926 1.5199 0.3207 8 6 6.3519 3.5197 -0.4325 9 7 5.7494 4.4294 -1.1682 10 14 8.1450 3.7400 0.0424 11 1 8.9407 2.6036 -0.4873 12 1 8.6559 5.0117 -0.5297 13 1 8.2639 3.7804 1.5220 14 6 3.5570 3.6702 -0.0171 15 6 3.1854 4.0153 -1.3989 16 7 2.8986 4.2817 -2.4654 17 6 4.2778 -0.0123 0.0015 18 6 3.5811 -1.2038 0.0069 19 6 2.1975 -1.1984 0.0059 20 6 1.4410 -2.5016 0.0117 21 8 2.3670 -3.5900 0.0178 22 1 -0.3634 0.0051 1.0276 23 1 -0.3632 0.8875 -0.5182 24 1 -0.3634 -0.8925 -0.5095 25 1 1.6565 2.1316 -0.0005 26 1 6.2366 5.2142 -1.4643 27 1 4.1906 4.4552 0.3957 28 1 2.6557 3.5748 0.5885 29 1 5.3579 -0.0174 0.0027 30 1 4.1167 -2.1417 0.0123 31 1 0.8135 -2.5536 0.9014 32 1 0.8148 -2.5622 -0.8785 33 1 1.9490 -4.4620 0.0214 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050582472.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:33 Heat of formation + Delta-G solvation = 14.970631 kcal Electronic energy + Delta-G solvation = -17348.068370 eV Core-core repulsion = 14567.204583 eV Total energy + Delta-G solvation = -2780.863788 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.08586 -37.15433 -35.81579 -34.63354 -32.45665 -31.63673 -29.59918 -27.91485 -26.43798 -25.12995 -23.15804 -21.09260 -19.66686 -17.78086 -16.87294 -16.69852 -16.26819 -14.91325 -14.69193 -14.54348 -14.16097 -13.79198 -13.25259 -13.03871 -12.66449 -12.45070 -12.29141 -11.99441 -11.78086 -11.64431 -11.34616 -11.23218 -11.13968 -10.68014 -10.55480 -10.38370 -10.26488 -10.11531 -9.71768 -9.46441 -8.58162 -7.86076 -6.76004 -6.48438 -3.88681 2.34682 2.45465 3.13199 3.16767 3.18333 3.73466 4.03849 4.14727 4.56892 4.58454 4.89857 4.99109 5.35147 5.43403 5.57805 5.65923 5.77590 5.79190 5.93272 6.01713 6.16908 6.22584 6.36316 6.49166 6.64879 6.79311 7.00291 7.22833 7.35583 7.41341 7.52099 7.73240 7.92575 8.03950 8.49108 8.86105 9.12559 9.42318 10.51747 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025666 B = 0.007050 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.666272 B = 3970.446871 C = 4830.386560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.030 4.030 3 C -0.232 4.232 4 C 0.219 3.781 5 N -0.449 5.449 6 C -0.311 4.311 7 H 0.103 0.897 8 C 0.027 3.973 9 N -0.877 5.877 10 Si 0.928 3.072 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.272 1.272 14 C 0.234 3.766 15 C 0.249 3.751 16 N -0.479 5.479 17 C -0.211 4.211 18 C -0.041 4.041 19 C -0.209 4.209 20 C 0.140 3.860 21 O -0.570 6.570 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.108 0.892 26 H 0.274 0.726 27 H 0.122 0.878 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.542 -7.383 5.777 11.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.031 4.031 3 C -0.256 4.256 4 C 0.105 3.895 5 N -0.138 5.138 6 C -0.438 4.438 7 H 0.121 0.879 8 C -0.177 4.177 9 N -0.513 5.513 10 Si 0.755 3.245 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.197 1.197 14 C 0.106 3.894 15 C -0.070 4.070 16 N -0.159 5.159 17 C -0.234 4.234 18 C -0.060 4.060 19 C -0.213 4.213 20 C 0.063 3.937 21 O -0.374 6.374 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.126 0.874 26 H 0.084 0.916 27 H 0.140 0.860 28 H 0.099 0.901 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -6.290 -5.995 4.100 9.608 hybrid contribution 0.744 -0.234 0.377 0.867 sum -5.546 -6.230 4.477 9.466 Atomic orbital electron populations 1.20759 0.92806 1.01858 1.01431 1.19019 0.94179 0.92077 0.97872 1.20175 0.92252 0.96862 1.16323 1.17988 0.90597 0.86682 0.94245 1.42421 1.04663 0.99951 1.66795 1.19588 0.79816 1.02395 1.42015 0.87898 1.25291 1.00478 0.96795 0.95168 1.69893 1.38264 1.11887 1.31291 0.85948 0.81718 0.77881 0.78977 1.19843 1.20947 1.19720 1.18599 0.96339 0.89264 0.85163 1.29437 0.89664 0.92230 0.95620 1.80860 1.13604 1.09514 1.11957 1.20553 0.99555 0.90653 1.12664 1.20485 0.93181 0.96839 0.95476 1.18807 0.93987 0.91882 1.16620 1.20654 0.89918 0.85019 0.98151 1.86506 1.36670 1.16549 1.97709 0.91780 0.92093 0.92384 0.87376 0.91554 0.86024 0.90076 0.86362 0.86772 0.94146 0.94173 0.78362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 9.59 36.01 0.35 -1.19 16 2 C -0.03 -0.55 5.88 -104.65 -0.62 -1.16 16 3 C -0.23 -4.61 8.75 -39.34 -0.34 -4.95 16 4 C 0.22 4.82 6.47 -83.85 -0.54 4.27 16 5 N -0.45 -10.33 2.70 -116.25 -0.31 -10.64 16 6 C -0.31 -7.54 9.08 -15.11 -0.14 -7.67 16 7 H 0.10 2.44 6.11 -52.48 -0.32 2.12 16 8 C 0.03 0.64 4.91 -17.45 -0.09 0.56 16 9 N -0.88 -22.24 9.42 55.49 0.52 -21.72 16 10 Si 0.93 19.14 29.59 -169.99 -5.03 14.11 16 11 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 12 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 13 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 14 C 0.23 4.87 4.80 -6.83 -0.03 4.84 16 15 C 0.25 5.81 13.26 -20.76 -0.28 5.53 16 16 N -0.48 -12.03 18.54 42.16 0.78 -11.25 16 17 C -0.21 -4.53 9.27 -39.34 -0.36 -4.90 16 18 C -0.04 -0.80 9.37 -39.61 -0.37 -1.17 16 19 C -0.21 -3.80 5.88 -104.55 -0.62 -4.42 16 20 C 0.14 1.99 6.15 36.00 0.22 2.21 16 21 O -0.57 -7.86 12.13 -35.23 -0.43 -8.29 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 24 H 0.06 0.71 6.63 -51.93 -0.34 0.36 16 25 H 0.11 2.01 6.16 -52.48 -0.32 1.68 16 26 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 27 H 0.12 2.57 6.55 -51.93 -0.34 2.23 16 28 H 0.08 1.39 6.53 -51.92 -0.34 1.05 16 29 H 0.12 2.55 6.13 -52.48 -0.32 2.23 16 30 H 0.11 2.14 7.00 -52.48 -0.37 1.77 16 31 H 0.04 0.51 8.13 -51.93 -0.42 0.09 16 32 H 0.04 0.52 7.49 -51.93 -0.39 0.13 16 33 H 0.37 3.04 9.12 45.56 0.42 3.46 16 LS Contribution 281.50 15.07 4.24 4.24 Total: -1.00 -29.41 281.50 -5.77 -35.18 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -2.73 Total: 6.44 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -2.82 Total: -8.06 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.99 Total: -43.62 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.43 Total: -8.29 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.41 -5.77 -35.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050582472.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.150 kcal (2) G-P(sol) polarization free energy of solvation -29.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds