Wall clock time and date at job start Mon Mar 30 2020 03:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38073 * 119.95768 * 2 1 4 4 C 1.39055 * 119.90880 * 180.23193 * 3 2 1 5 5 N 1.39296 * 120.09035 * 179.74421 * 4 3 2 6 6 C 1.36842 * 120.00486 * 179.72454 * 5 4 3 7 7 H 1.08008 * 119.99615 * 339.64113 * 6 5 4 8 8 C 1.38791 * 120.00583 * 159.64241 * 6 5 4 9 9 N 1.31597 * 119.99738 * 341.15979 * 8 6 5 10 10 Si 1.86800 * 120.00009 * 161.16023 * 8 6 5 11 11 H 1.48496 * 109.47492 * 60.00343 * 10 8 6 12 12 H 1.48510 * 109.46940 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47235 * 299.99918 * 10 8 6 14 14 C 1.46502 * 119.99857 * 359.71579 * 5 4 3 15 15 C 1.47190 * 109.47566 * 276.11898 * 14 5 4 16 16 N 5.13300 * 105.73008 * 330.06678 * 2 1 3 17 17 C 1.39098 * 119.82028 * 359.46419 * 4 3 2 18 18 C 1.38027 * 119.91468 * 0.27958 * 17 4 3 19 19 C 1.38306 * 119.94939 * 179.71817 * 2 1 3 20 20 C 1.50698 * 119.91503 * 0.02562 * 19 2 1 21 21 O 1.42903 * 109.47194 * 180.02562 * 20 19 2 22 22 H 1.08997 * 109.47509 * 270.28492 * 1 2 3 23 23 H 1.08999 * 109.46460 * 30.27972 * 1 2 3 24 24 H 1.09005 * 109.47226 * 150.28033 * 1 2 3 25 25 H 1.08007 * 120.04242 * 359.97048 * 3 2 1 26 26 H 0.96998 * 119.99997 * 180.02562 * 9 8 6 27 27 H 1.08998 * 109.47000 * 156.11176 * 14 5 4 28 28 H 1.09009 * 109.46707 * 36.12164 * 14 5 4 29 29 H 1.08008 * 120.04615 * 180.30041 * 17 4 3 30 30 H 1.08003 * 119.95944 * 180.02562 * 18 17 4 31 31 H 1.08994 * 109.47514 * 300.02579 * 20 19 2 32 32 H 1.09001 * 109.46862 * 60.02433 * 20 19 2 33 33 H 0.96698 * 113.99807 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1965 1.1963 0.0000 4 6 3.5871 1.1951 -0.0049 5 7 4.2865 2.3997 -0.0103 6 6 5.6549 2.3965 -0.0094 7 1 6.1926 1.5199 0.3207 8 6 6.3519 3.5197 -0.4325 9 7 5.7494 4.4294 -1.1682 10 14 8.1450 3.7400 0.0424 11 1 8.9407 2.6036 -0.4873 12 1 8.6559 5.0117 -0.5297 13 1 8.2639 3.7804 1.5220 14 6 3.5570 3.6702 -0.0171 15 6 3.1854 4.0153 -1.3989 16 7 2.8986 4.2817 -2.4654 17 6 4.2778 -0.0123 0.0015 18 6 3.5811 -1.2038 0.0069 19 6 2.1975 -1.1984 0.0059 20 6 1.4410 -2.5016 0.0117 21 8 2.3670 -3.5900 0.0178 22 1 -0.3634 0.0051 1.0276 23 1 -0.3632 0.8875 -0.5182 24 1 -0.3634 -0.8925 -0.5095 25 1 1.6565 2.1316 -0.0005 26 1 6.2366 5.2142 -1.4643 27 1 4.1906 4.4552 0.3957 28 1 2.6557 3.5748 0.5885 29 1 5.3579 -0.0174 0.0027 30 1 4.1167 -2.1417 0.0123 31 1 0.8135 -2.5536 0.9014 32 1 0.8148 -2.5622 -0.8785 33 1 1.9490 -4.4620 0.0214 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050582472.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:32 Heat of formation + Delta-G solvation = -3.500093 kcal Electronic energy + Delta-G solvation = -17348.869321 eV Core-core repulsion = 14567.204583 eV Total energy + Delta-G solvation = -2781.664738 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.61890 -38.60585 -37.14463 -36.39490 -34.10153 -33.15480 -31.08728 -29.55137 -27.77460 -26.65012 -24.69562 -22.58799 -21.20852 -19.43270 -18.32808 -18.06593 -17.93710 -16.43539 -16.19018 -15.77030 -15.71025 -15.30719 -14.81693 -14.36740 -14.25162 -13.98574 -13.75582 -13.59417 -13.20626 -13.14831 -12.93196 -12.81151 -12.75939 -12.33728 -12.20249 -12.03021 -11.66004 -11.43350 -11.25307 -10.90218 -10.25152 -9.37540 -8.45789 -8.22171 -5.72382 0.81341 0.90019 1.46999 1.50026 1.56112 1.97961 2.27084 2.37784 2.90217 3.22503 3.30483 3.59841 3.67604 4.19923 4.27518 4.38701 4.53666 4.58237 4.69906 4.77076 4.83609 4.86168 4.99299 5.09569 5.14922 5.26853 5.45201 5.53644 5.75485 5.84136 6.05609 6.05930 6.45638 6.73174 7.04784 7.11292 7.40239 7.67237 8.70665 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025666 B = 0.007050 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.666272 B = 3970.446871 C = 4830.386560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.033 4.033 3 C -0.239 4.239 4 C 0.197 3.803 5 N -0.471 5.471 6 C -0.321 4.321 7 H 0.098 0.902 8 C -0.013 4.013 9 N -0.907 5.907 10 Si 0.988 3.012 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.262 1.262 14 C 0.237 3.763 15 C 0.262 3.738 16 N -0.519 5.519 17 C -0.233 4.233 18 C -0.051 4.051 19 C -0.206 4.206 20 C 0.141 3.859 21 O -0.591 6.591 22 H 0.086 0.914 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.119 0.881 26 H 0.268 0.732 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.120 0.880 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.389 -9.074 6.731 14.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.034 4.034 3 C -0.262 4.262 4 C 0.087 3.913 5 N -0.164 5.164 6 C -0.449 4.449 7 H 0.115 0.885 8 C -0.213 4.213 9 N -0.546 5.546 10 Si 0.813 3.187 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.187 1.187 14 C 0.110 3.890 15 C -0.056 4.056 16 N -0.200 5.200 17 C -0.257 4.257 18 C -0.070 4.070 19 C -0.209 4.209 20 C 0.064 3.936 21 O -0.399 6.399 22 H 0.105 0.895 23 H 0.083 0.917 24 H 0.098 0.902 25 H 0.137 0.863 26 H 0.078 0.922 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.122 0.878 30 H 0.138 0.862 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -8.172 -7.758 5.075 12.358 hybrid contribution 1.172 0.025 0.102 1.177 sum -6.999 -7.733 5.177 11.644 Atomic orbital electron populations 1.20833 0.89282 1.03186 1.03264 1.19543 0.96763 0.91160 0.95967 1.20473 0.91475 0.98429 1.15849 1.18322 0.91734 0.86552 0.94726 1.42469 1.04358 1.00672 1.68880 1.19743 0.80973 1.02384 1.41812 0.88480 1.25934 1.03617 0.96576 0.95156 1.69998 1.39261 1.12321 1.32995 0.85042 0.77653 0.77055 0.78962 1.20282 1.21425 1.18695 1.18794 0.97549 0.88525 0.84137 1.30056 0.88456 0.91058 0.96037 1.80839 1.15195 1.10863 1.13135 1.20634 0.99232 0.91668 1.14155 1.20654 0.94377 0.96297 0.95652 1.19417 0.93627 0.94342 1.13504 1.20685 0.89487 0.83200 1.00269 1.86439 1.37617 1.18051 1.97800 0.89506 0.91701 0.90235 0.86280 0.92223 0.86561 0.86335 0.87782 0.86243 0.91519 0.92166 0.75397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.51 9.59 71.24 0.68 -1.82 16 2 C -0.03 -1.10 5.88 -19.89 -0.12 -1.21 16 3 C -0.24 -9.11 8.75 22.43 0.20 -8.91 16 4 C 0.20 8.70 6.47 38.36 0.25 8.95 16 5 N -0.47 -21.97 2.70 -521.71 -1.41 -23.38 16 6 C -0.32 -15.98 9.08 84.04 0.76 -15.22 16 7 H 0.10 4.78 6.11 -2.91 -0.02 4.76 16 8 C -0.01 -0.63 4.91 84.86 0.42 -0.21 16 9 N -0.91 -47.15 9.42 21.65 0.20 -46.95 16 10 Si 0.99 40.11 29.59 68.60 2.03 42.14 16 11 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 12 H -0.29 -11.80 7.11 99.48 0.71 -11.10 16 13 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 14 C 0.24 9.90 4.80 84.57 0.41 10.31 16 15 C 0.26 12.31 13.26 89.44 1.19 13.49 16 16 N -0.52 -26.41 18.54 20.00 0.37 -26.04 16 17 C -0.23 -10.17 9.27 22.43 0.21 -9.97 16 18 C -0.05 -1.96 9.37 22.25 0.21 -1.75 16 19 C -0.21 -6.89 5.88 -19.82 -0.12 -7.01 16 20 C 0.14 3.39 6.15 71.24 0.44 3.83 16 21 O -0.59 -14.20 12.13 -148.98 -1.81 -16.01 16 22 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.06 1.47 8.09 -2.39 -0.02 1.45 16 24 H 0.08 1.51 6.63 -2.38 -0.02 1.49 16 25 H 0.12 4.19 6.16 -2.91 -0.02 4.17 16 26 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 27 H 0.12 4.98 6.55 -2.39 -0.02 4.96 16 28 H 0.12 3.93 6.53 -2.38 -0.02 3.92 16 29 H 0.10 4.70 6.13 -2.91 -0.02 4.68 16 30 H 0.12 4.39 7.00 -2.91 -0.02 4.37 16 31 H 0.07 1.31 8.13 -2.39 -0.02 1.29 16 32 H 0.06 1.26 7.49 -2.39 -0.02 1.24 16 33 H 0.40 4.94 9.12 -74.06 -0.68 4.26 16 Total: -1.00 -64.11 281.50 4.39 -59.72 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.48 Total: 20.05 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 4.52 Total: -9.53 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -0.84 Total: -96.37 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -1.81 Total: -16.01 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -64.11 4.39 -59.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050582472.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.223 kcal (2) G-P(sol) polarization free energy of solvation -64.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds