Wall clock time and date at job start Mon Mar 30 2020 04:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46952 * 2 1 4 4 H 1.08997 * 109.55027 * 304.81097 * 3 2 1 5 5 N 1.47012 * 109.54608 * 65.00387 * 3 2 1 6 6 C 1.40045 * 118.08373 * 78.73381 * 5 3 2 7 7 C 1.38411 * 120.91051 * 208.02824 * 6 5 3 8 8 C 1.38323 * 119.75537 * 181.06248 * 7 6 5 9 9 C 1.38357 * 120.19567 * 359.96597 * 8 7 6 10 10 C 1.38199 * 120.38410 * 359.83862 * 9 8 7 11 11 C 1.38749 * 119.86997 * 359.97438 * 10 9 8 12 12 N 1.39637 * 120.61405 * 180.47436 * 11 10 9 13 13 C 1.37097 * 119.55390 * 350.22569 * 12 11 10 14 14 H 1.08001 * 119.99772 * 319.60307 * 13 12 11 15 15 C 1.38864 * 120.00136 * 139.88440 * 13 12 11 16 16 N 1.31438 * 119.99797 * 340.60611 * 15 13 12 17 17 Si 1.86802 * 119.99982 * 160.60218 * 15 13 12 18 18 H 1.48496 * 109.46849 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46803 * 120.00210 * 17 15 13 20 20 H 1.48497 * 109.47211 * 239.99985 * 17 15 13 21 21 C 1.34538 * 120.88935 * 170.49387 * 12 11 10 22 22 O 1.21291 * 119.64153 * 172.92584 * 21 12 11 23 23 H 1.09000 * 109.47192 * 299.99753 * 1 2 3 24 24 H 1.08996 * 109.47162 * 59.99799 * 1 2 3 25 25 H 1.08999 * 109.46951 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47192 * 240.00247 * 2 1 3 27 27 H 1.09001 * 109.47467 * 119.99876 * 2 1 3 28 28 H 0.97011 * 120.96118 * 258.75548 * 5 3 2 29 29 H 1.08003 * 120.11943 * 1.03655 * 7 6 5 30 30 H 1.08001 * 119.90156 * 179.97438 * 8 7 6 31 31 H 1.07997 * 119.80825 * 179.79625 * 9 8 7 32 32 H 1.07995 * 120.06895 * 180.02562 * 10 9 8 33 33 H 0.97003 * 119.99922 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6087 1.9819 -0.8433 5 7 1.6520 2.1014 1.2556 6 6 2.4054 1.8277 2.4040 7 6 1.8354 1.9030 3.6630 8 6 2.6075 1.6492 4.7824 9 6 3.9444 1.3205 4.6457 10 6 4.5196 1.2394 3.3917 11 6 3.7530 1.4883 2.2623 12 7 4.3158 1.4011 0.9874 13 6 5.6737 1.2663 0.8554 14 1 6.3369 1.8278 1.4967 15 6 6.1964 0.4123 -0.1067 16 7 5.4452 -0.5349 -0.6225 17 14 7.9671 0.6098 -0.6680 18 1 8.5941 1.7414 0.0610 19 1 8.7187 -0.6390 -0.3835 20 1 7.9963 0.8834 -2.1273 21 6 3.5439 1.4530 -0.1133 22 8 4.0632 1.5050 -1.2082 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.8956 2.7080 1.2880 29 1 0.7919 2.1594 3.7711 30 1 2.1652 1.7077 5.7659 31 1 4.5422 1.1268 5.5240 32 1 5.5636 0.9820 3.2908 33 1 5.8105 -1.1318 -1.2943 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057928882.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:29 Heat of formation + Delta-G solvation = 5.797073 kcal Electronic energy + Delta-G solvation = -18326.594094 eV Core-core repulsion = 15545.332511 eV Total energy + Delta-G solvation = -2781.261583 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.08871 -37.47377 -35.69611 -34.28966 -32.19415 -31.84130 -29.04137 -28.21908 -26.45725 -24.49207 -22.13981 -21.55145 -21.34295 -18.42884 -17.31332 -17.03293 -16.51695 -15.20358 -14.56817 -14.35479 -14.21565 -13.89828 -13.39378 -13.22678 -13.06271 -12.81040 -12.21877 -11.84198 -11.70340 -11.37955 -11.11944 -10.99602 -10.89978 -10.79066 -10.48059 -10.32108 -10.17170 -9.53384 -9.40696 -8.69887 -8.21459 -7.31256 -6.54706 -6.24462 -4.05062 2.15324 2.24614 3.21910 3.31802 3.34132 3.76491 4.15134 4.21543 4.66870 4.74864 5.19770 5.31661 5.51402 5.53423 5.59086 5.71615 5.87984 5.90951 6.05053 6.18603 6.23030 6.32202 6.41397 6.60212 6.73190 6.77953 6.95178 7.11609 7.34440 7.46166 7.54453 7.81559 8.11044 8.34454 8.79835 8.88628 9.42057 9.91870 10.75411 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.020924 B = 0.010900 C = 0.007853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.830956 B = 2568.179523 C = 3564.674057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.150 3.850 4 H 0.096 0.904 5 N -0.753 5.753 6 C 0.135 3.865 7 C -0.151 4.151 8 C -0.149 4.149 9 C -0.131 4.131 10 C -0.130 4.130 11 C 0.136 3.864 12 N -0.381 5.381 13 C -0.364 4.364 14 H 0.090 0.910 15 C 0.074 3.926 16 N -0.831 5.831 17 Si 0.920 3.080 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.278 1.278 21 C 0.482 3.518 22 O -0.514 6.514 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.396 0.604 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.130 0.870 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 2.168 5.703 9.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C 0.040 3.960 4 H 0.114 0.886 5 N -0.390 5.390 6 C 0.034 3.966 7 C -0.174 4.174 8 C -0.169 4.169 9 C -0.151 4.151 10 C -0.152 4.152 11 C 0.033 3.967 12 N -0.089 5.089 13 C -0.490 4.490 14 H 0.108 0.892 15 C -0.137 4.137 16 N -0.463 5.463 17 Si 0.746 3.254 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.204 1.204 21 C 0.270 3.730 22 O -0.389 6.389 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.231 0.769 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.148 0.852 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.190 1.928 4.674 8.790 hybrid contribution 0.486 0.115 -0.295 0.580 sum -6.705 2.043 4.379 8.264 Atomic orbital electron populations 1.21681 0.95854 1.01117 1.01224 1.21813 0.95394 0.96046 1.03357 1.21267 0.93163 0.94454 0.87072 0.88557 1.44367 1.35853 1.52906 1.05886 1.17452 0.89194 1.02660 0.87315 1.20273 0.98797 1.07485 0.90809 1.20550 0.94281 1.05036 0.97059 1.20700 0.95027 1.03051 0.96357 1.20689 1.00748 1.03387 0.90419 1.18291 0.89850 1.00757 0.87779 1.41036 1.07020 1.59597 1.01203 1.19159 0.79729 1.26827 1.23289 0.89200 1.25225 0.99417 0.92820 0.96262 1.69872 1.37606 1.13740 1.25084 0.86027 0.82169 0.78110 0.79124 1.19220 1.20847 1.20398 1.20282 0.87742 0.79955 0.85015 1.90546 1.74141 1.48037 1.26129 0.92721 0.93247 0.93099 0.90711 0.91485 0.76913 0.87055 0.87386 0.87218 0.85246 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.80 37.16 0.36 -1.64 16 2 C -0.13 -2.37 5.52 -26.73 -0.15 -2.52 16 3 C 0.15 2.99 3.18 -68.74 -0.22 2.77 16 4 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 5 N -0.75 -13.21 4.98 -52.72 -0.26 -13.47 16 6 C 0.14 2.63 6.23 -83.50 -0.52 2.11 16 7 C -0.15 -2.50 9.99 -39.49 -0.39 -2.90 16 8 C -0.15 -2.39 10.04 -39.51 -0.40 -2.78 16 9 C -0.13 -2.28 10.03 -39.55 -0.40 -2.67 16 10 C -0.13 -2.72 9.26 -39.41 -0.37 -3.09 16 11 C 0.14 3.11 6.44 -83.58 -0.54 2.57 16 12 N -0.38 -9.99 2.75 -58.91 -0.16 -10.15 16 13 C -0.36 -10.08 7.93 -14.97 -0.12 -10.20 16 14 H 0.09 2.40 7.39 -52.49 -0.39 2.01 16 15 C 0.07 2.07 4.31 -17.49 -0.08 1.99 16 16 N -0.83 -24.11 11.66 55.49 0.65 -23.46 16 17 Si 0.92 21.59 29.59 -169.99 -5.03 16.56 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.48 12.49 6.02 -11.03 -0.07 12.42 16 22 O -0.51 -15.12 14.82 5.55 0.08 -15.03 16 23 H 0.05 0.73 7.76 -51.93 -0.40 0.33 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.07 1.41 7.99 -51.93 -0.42 0.99 16 28 H 0.40 5.60 8.96 -40.82 -0.37 5.23 16 29 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 30 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.13 2.78 6.81 -52.49 -0.36 2.42 16 33 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 277.84 15.07 4.19 4.19 Total: -1.00 -31.63 277.84 -7.44 -39.06 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.02 Total: 6.25 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -2.87 Total: -3.94 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.22 Total: -47.09 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.08 Total: -15.03 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.63 -7.44 -39.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057928882.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.860 kcal (2) G-P(sol) polarization free energy of solvation -31.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds