Wall clock time and date at job start Mon Mar 30 2020 04:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46952 * 2 1 4 4 H 1.08997 * 109.55027 * 304.81097 * 3 2 1 5 5 N 1.47012 * 109.54608 * 65.00387 * 3 2 1 6 6 C 1.40045 * 118.08373 * 78.73381 * 5 3 2 7 7 C 1.38411 * 120.91051 * 208.02824 * 6 5 3 8 8 C 1.38323 * 119.75537 * 181.06248 * 7 6 5 9 9 C 1.38357 * 120.19567 * 359.96597 * 8 7 6 10 10 C 1.38199 * 120.38410 * 359.83862 * 9 8 7 11 11 C 1.38749 * 119.86997 * 359.97438 * 10 9 8 12 12 N 1.39637 * 120.61405 * 180.47436 * 11 10 9 13 13 C 1.37097 * 119.55390 * 350.22569 * 12 11 10 14 14 H 1.08001 * 119.99772 * 319.60307 * 13 12 11 15 15 C 1.38864 * 120.00136 * 139.88440 * 13 12 11 16 16 N 1.31438 * 119.99797 * 340.60611 * 15 13 12 17 17 Si 1.86802 * 119.99982 * 160.60218 * 15 13 12 18 18 H 1.48496 * 109.46849 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46803 * 120.00210 * 17 15 13 20 20 H 1.48497 * 109.47211 * 239.99985 * 17 15 13 21 21 C 1.34538 * 120.88935 * 170.49387 * 12 11 10 22 22 O 1.21291 * 119.64153 * 172.92584 * 21 12 11 23 23 H 1.09000 * 109.47192 * 299.99753 * 1 2 3 24 24 H 1.08996 * 109.47162 * 59.99799 * 1 2 3 25 25 H 1.08999 * 109.46951 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47192 * 240.00247 * 2 1 3 27 27 H 1.09001 * 109.47467 * 119.99876 * 2 1 3 28 28 H 0.97011 * 120.96118 * 258.75548 * 5 3 2 29 29 H 1.08003 * 120.11943 * 1.03655 * 7 6 5 30 30 H 1.08001 * 119.90156 * 179.97438 * 8 7 6 31 31 H 1.07997 * 119.80825 * 179.79625 * 9 8 7 32 32 H 1.07995 * 120.06895 * 180.02562 * 10 9 8 33 33 H 0.97003 * 119.99922 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6087 1.9819 -0.8433 5 7 1.6520 2.1014 1.2556 6 6 2.4054 1.8277 2.4040 7 6 1.8354 1.9030 3.6630 8 6 2.6075 1.6492 4.7824 9 6 3.9444 1.3205 4.6457 10 6 4.5196 1.2394 3.3917 11 6 3.7530 1.4883 2.2623 12 7 4.3158 1.4011 0.9874 13 6 5.6737 1.2663 0.8554 14 1 6.3369 1.8278 1.4967 15 6 6.1964 0.4123 -0.1067 16 7 5.4452 -0.5349 -0.6225 17 14 7.9671 0.6098 -0.6680 18 1 8.5941 1.7414 0.0610 19 1 8.7187 -0.6390 -0.3835 20 1 7.9963 0.8834 -2.1273 21 6 3.5439 1.4530 -0.1133 22 8 4.0632 1.5050 -1.2082 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.8956 2.7080 1.2880 29 1 0.7919 2.1594 3.7711 30 1 2.1652 1.7077 5.7659 31 1 4.5422 1.1268 5.5240 32 1 5.5636 0.9820 3.2908 33 1 5.8105 -1.1318 -1.2943 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057928882.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:28 Heat of formation + Delta-G solvation = -15.147004 kcal Electronic energy + Delta-G solvation = -18327.502298 eV Core-core repulsion = 15545.332511 eV Total energy + Delta-G solvation = -2782.169786 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.77257 -39.15551 -37.29095 -36.12429 -33.95263 -33.49210 -30.55303 -29.73431 -28.23092 -26.19170 -23.78042 -23.09172 -22.88530 -20.15361 -18.97586 -18.80516 -18.08077 -17.12517 -16.14407 -16.03496 -15.76474 -15.69396 -15.04742 -14.76734 -14.54898 -14.32762 -13.74560 -13.56042 -13.42952 -12.99945 -12.85226 -12.70734 -12.41828 -12.28197 -12.16789 -11.85703 -11.74973 -11.32115 -11.05731 -10.58206 -10.04142 -8.93594 -8.48080 -8.01332 -6.15415 0.63144 0.77899 1.30756 1.38034 1.47852 2.03772 2.30648 2.61457 2.93340 3.03930 3.32490 3.73004 4.03824 4.10126 4.18123 4.42201 4.48319 4.54612 4.73546 4.78486 4.85157 4.96553 5.10241 5.19731 5.24635 5.34755 5.38683 5.52777 5.62364 5.88800 6.01632 6.07495 6.40597 6.82641 6.91791 7.07295 7.48737 8.00609 8.69080 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.020924 B = 0.010900 C = 0.007853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.830956 B = 2568.179523 C = 3564.674057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.116 4.116 3 C 0.160 3.840 4 H 0.115 0.885 5 N -0.738 5.738 6 C 0.130 3.870 7 C -0.141 4.141 8 C -0.125 4.125 9 C -0.133 4.133 10 C -0.146 4.146 11 C 0.082 3.918 12 N -0.400 5.400 13 C -0.380 4.380 14 H 0.085 0.915 15 C 0.024 3.976 16 N -0.867 5.867 17 Si 0.981 3.019 18 H -0.256 1.256 19 H -0.267 1.267 20 H -0.288 1.288 21 C 0.460 3.540 22 O -0.573 6.573 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.046 0.954 27 H 0.037 0.963 28 H 0.417 0.583 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.140 0.860 32 H 0.107 0.893 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.948 2.992 8.311 13.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.156 4.156 3 C 0.050 3.950 4 H 0.133 0.867 5 N -0.377 5.377 6 C 0.029 3.971 7 C -0.163 4.163 8 C -0.145 4.145 9 C -0.153 4.153 10 C -0.168 4.168 11 C -0.018 4.018 12 N -0.109 5.109 13 C -0.507 4.507 14 H 0.103 0.897 15 C -0.183 4.183 16 N -0.501 5.501 17 Si 0.804 3.196 18 H -0.180 1.180 19 H -0.192 1.192 20 H -0.214 1.214 21 C 0.250 3.750 22 O -0.452 6.452 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.256 0.744 29 H 0.171 0.829 30 H 0.172 0.828 31 H 0.158 0.842 32 H 0.125 0.875 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.571 2.777 7.379 12.400 hybrid contribution 1.139 -0.094 -0.848 1.423 sum -8.432 2.683 6.531 10.997 Atomic orbital electron populations 1.21604 0.91545 1.02513 1.02886 1.21696 0.98840 0.94509 1.00566 1.21093 0.89228 0.95774 0.88863 0.86701 1.44164 1.36058 1.53023 1.04482 1.17724 0.88098 1.02222 0.89050 1.20763 1.00756 1.05535 0.89291 1.21142 0.93251 1.01046 0.99019 1.21049 0.96367 1.02285 0.95595 1.20800 0.99967 1.04129 0.91886 1.18726 0.92099 1.04187 0.86746 1.41176 1.06726 1.60204 1.02804 1.19360 0.81280 1.26569 1.23448 0.89704 1.26115 1.03407 0.92468 0.96325 1.69974 1.39375 1.14837 1.25940 0.85101 0.77755 0.78910 0.77818 1.18005 1.19230 1.21424 1.21335 0.90275 0.79128 0.84281 1.90478 1.75739 1.51137 1.27851 0.91121 0.91395 0.91909 0.93484 0.94413 0.74378 0.82885 0.82751 0.84235 0.87466 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 9.80 71.98 0.71 -2.59 16 2 C -0.12 -4.39 5.52 30.60 0.17 -4.22 16 3 C 0.16 6.42 3.18 44.19 0.14 6.56 16 4 H 0.12 4.12 8.14 -2.39 -0.02 4.10 16 5 N -0.74 -24.38 4.98 -320.71 -1.60 -25.98 16 6 C 0.13 4.83 6.23 38.22 0.24 5.07 16 7 C -0.14 -3.99 9.99 22.33 0.22 -3.77 16 8 C -0.12 -3.33 10.04 22.32 0.22 -3.11 16 9 C -0.13 -4.23 10.03 22.29 0.22 -4.00 16 10 C -0.15 -6.15 9.26 22.38 0.21 -5.95 16 11 C 0.08 3.82 6.44 38.37 0.25 4.07 16 12 N -0.40 -21.98 2.75 -458.81 -1.26 -23.25 16 13 C -0.38 -22.24 7.93 84.02 0.67 -21.57 16 14 H 0.09 4.82 7.39 -2.91 -0.02 4.80 16 15 C 0.02 1.40 4.31 84.90 0.37 1.76 16 16 N -0.87 -53.40 11.66 21.65 0.25 -53.14 16 17 Si 0.98 46.37 29.59 68.60 2.03 48.40 16 18 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 21 C 0.46 24.97 6.02 87.73 0.53 25.49 16 22 O -0.57 -35.80 14.82 -3.06 -0.05 -35.85 16 23 H 0.07 1.61 7.76 -2.39 -0.02 1.59 16 24 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.04 1.61 7.99 -2.39 -0.02 1.59 16 28 H 0.42 10.25 8.96 -92.70 -0.83 9.42 16 29 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 30 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 31 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 32 H 0.11 4.86 6.81 -2.91 -0.02 4.84 16 33 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -75.25 277.84 3.61 -71.64 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.29 Total: 20.44 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 3.94 Total: -2.26 kcal Atomic # 7 Polarization: -99.76 SS G_CDS: -2.61 Total: -102.37 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.05 Total: -35.85 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -75.25 3.61 -71.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057928882.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.491 kcal (2) G-P(sol) polarization free energy of solvation -75.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds