Wall clock time and date at job start Mon Mar 30 2020 04:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47227 * 2 1 4 4 H 1.08998 * 109.54480 * 55.19088 * 3 2 1 5 5 N 1.47022 * 109.54569 * 295.00141 * 3 2 1 6 6 C 1.40039 * 118.07078 * 281.36105 * 5 3 2 7 7 C 1.38427 * 120.89418 * 151.95707 * 6 5 3 8 8 C 1.38316 * 119.75431 * 178.93906 * 7 6 5 9 9 C 1.38369 * 120.19011 * 0.02562 * 8 7 6 10 10 C 1.38193 * 120.38683 * 0.20144 * 9 8 7 11 11 C 1.38750 * 119.87220 * 359.97438 * 10 9 8 12 12 N 1.39640 * 120.62136 * 179.53776 * 11 10 9 13 13 C 1.37096 * 119.55292 * 9.75544 * 12 11 10 14 14 H 1.08000 * 119.99910 * 39.59656 * 13 12 11 15 15 C 1.38863 * 119.99806 * 219.59289 * 13 12 11 16 16 N 1.31445 * 119.99678 * 209.21994 * 15 13 12 17 17 Si 1.86794 * 120.00232 * 29.21571 * 15 13 12 18 18 H 1.48500 * 109.47042 * 95.31230 * 17 15 13 19 19 H 1.48502 * 109.47472 * 335.31312 * 17 15 13 20 20 H 1.48496 * 109.47461 * 215.31347 * 17 15 13 21 21 C 1.34541 * 120.88800 * 190.03820 * 12 11 10 22 22 O 1.21284 * 119.63638 * 186.53471 * 21 12 11 23 23 H 1.09000 * 109.47129 * 60.00186 * 1 2 3 24 24 H 1.09002 * 109.46973 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47111 * 299.99790 * 1 2 3 26 26 H 1.09006 * 109.46775 * 239.99925 * 2 1 3 27 27 H 1.08998 * 109.47057 * 120.00585 * 2 1 3 28 28 H 0.97000 * 120.96020 * 101.39526 * 5 3 2 29 29 H 1.08005 * 120.12022 * 358.95966 * 7 6 5 30 30 H 1.07998 * 119.90944 * 180.02562 * 8 7 6 31 31 H 1.08001 * 119.80262 * 180.21368 * 9 8 7 32 32 H 1.08003 * 120.06426 * 179.97438 * 10 9 8 33 33 H 0.97003 * 119.99312 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6088 1.9818 0.8434 5 7 1.6519 2.1015 -1.2557 6 6 2.4042 1.8260 -2.4043 7 6 1.8330 1.9013 -3.6630 8 6 2.6036 1.6458 -4.7829 9 6 3.9404 1.3155 -4.6471 10 6 4.5164 1.2338 -3.3936 11 6 3.7512 1.4847 -2.2637 12 7 4.3149 1.3972 -0.9891 13 6 5.6726 1.2597 -0.8582 14 1 6.3363 1.8095 -1.5090 15 6 6.1945 0.4135 0.1113 16 7 7.3696 0.6681 0.6423 17 14 5.2264 -1.0865 0.6610 18 1 5.6788 -2.2755 -0.1050 19 1 3.7797 -0.8598 0.4142 20 1 5.4510 -1.3168 2.1107 21 6 3.5429 1.4404 0.1119 22 8 4.0621 1.4825 1.2072 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.8970 2.7097 -1.2874 29 1 0.7897 2.1589 -3.7702 30 1 2.1606 1.7042 -5.7661 31 1 4.5371 1.1206 -5.5259 32 1 5.5603 0.9752 -3.2937 33 1 7.7339 0.0772 1.3199 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057928885.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:31 Heat of formation + Delta-G solvation = 14.521505 kcal Electronic energy + Delta-G solvation = -18448.280019 eV Core-core repulsion = 15667.396756 eV Total energy + Delta-G solvation = -2780.883263 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.45358 -37.81078 -35.91484 -34.58508 -32.40674 -32.13545 -29.29608 -28.45627 -26.71411 -24.51796 -22.42184 -21.76102 -21.35792 -18.71234 -17.44637 -17.31696 -16.72275 -15.56610 -14.82841 -14.53622 -14.32894 -14.03561 -13.57350 -13.40410 -13.04056 -13.01186 -12.59265 -12.26986 -12.08838 -11.62159 -11.41519 -11.17819 -11.04744 -10.70019 -10.61985 -10.32604 -9.99000 -9.71208 -9.38322 -8.85433 -8.43650 -7.57083 -6.67954 -6.45888 -4.08301 1.93753 2.08757 3.09454 3.34976 3.36271 3.59940 3.90169 4.22481 4.33898 4.53771 5.02915 5.04903 5.29935 5.32161 5.39729 5.57522 5.67753 5.72056 5.88911 5.96511 6.05397 6.13451 6.22088 6.36157 6.46124 6.58487 6.80070 6.92832 7.19556 7.37218 7.59250 7.65596 7.92478 8.16937 8.61476 8.67698 9.23501 9.56048 10.60607 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.020210 B = 0.012646 C = 0.009100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.119990 B = 2213.687502 C = 3076.240735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.149 3.851 4 H 0.104 0.896 5 N -0.751 5.751 6 C 0.141 3.859 7 C -0.152 4.152 8 C -0.139 4.139 9 C -0.133 4.133 10 C -0.120 4.120 11 C 0.122 3.878 12 N -0.387 5.387 13 C -0.377 4.377 14 H 0.103 0.897 15 C 0.107 3.893 16 N -0.834 5.834 17 Si 0.892 3.108 18 H -0.290 1.290 19 H -0.258 1.258 20 H -0.283 1.283 21 C 0.464 3.536 22 O -0.532 6.532 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.399 0.601 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.135 0.865 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.386 -0.423 -6.446 13.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 C 0.039 3.961 4 H 0.122 0.878 5 N -0.388 5.388 6 C 0.039 3.961 7 C -0.175 4.175 8 C -0.159 4.159 9 C -0.153 4.153 10 C -0.142 4.142 11 C 0.021 3.979 12 N -0.096 5.096 13 C -0.501 4.501 14 H 0.121 0.879 15 C -0.106 4.106 16 N -0.465 5.465 17 Si 0.719 3.281 18 H -0.218 1.218 19 H -0.182 1.182 20 H -0.208 1.208 21 C 0.254 3.746 22 O -0.411 6.411 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.235 0.765 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.153 0.847 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.781 -0.517 -5.467 12.998 hybrid contribution -0.564 -0.525 0.318 0.834 sum -12.345 -1.042 -5.149 13.416 Atomic orbital electron populations 1.21676 0.95245 1.01363 1.01584 1.22028 0.96179 0.96151 1.03112 1.21237 0.92483 0.94596 0.87758 0.87772 1.44344 1.36071 1.52766 1.05624 1.17467 0.89087 1.02118 0.87381 1.20308 0.99004 1.07446 0.90696 1.20634 0.94245 1.03863 0.97207 1.20758 0.95043 1.03018 0.96477 1.20801 1.00915 1.02158 0.90301 1.18264 0.89928 1.02262 0.87466 1.41308 1.07399 1.59201 1.01646 1.18732 0.78488 1.29826 1.23070 0.87948 1.25146 0.94928 0.97207 0.93281 1.69875 1.19298 1.34877 1.22452 0.86554 0.82124 0.81355 0.78035 1.21813 1.18248 1.20831 1.20536 0.88596 0.80123 0.85330 1.90551 1.74063 1.50541 1.25934 0.92436 0.92927 0.92970 0.91398 0.90754 0.76537 0.86782 0.87085 0.86856 0.84706 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.80 37.16 0.36 -1.43 16 2 C -0.14 -2.30 4.43 -26.73 -0.12 -2.42 16 3 C 0.15 2.75 3.20 -68.80 -0.22 2.53 16 4 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 5 N -0.75 -12.22 4.98 -52.78 -0.26 -12.48 16 6 C 0.14 2.56 6.23 -83.50 -0.52 2.04 16 7 C -0.15 -2.33 9.99 -39.48 -0.39 -2.72 16 8 C -0.14 -2.07 10.04 -39.50 -0.40 -2.46 16 9 C -0.13 -2.16 10.03 -39.55 -0.40 -2.56 16 10 C -0.12 -2.39 9.26 -39.41 -0.36 -2.75 16 11 C 0.12 2.64 6.44 -83.58 -0.54 2.10 16 12 N -0.39 -9.72 2.41 -58.96 -0.14 -9.86 16 13 C -0.38 -10.62 8.34 -14.97 -0.12 -10.74 16 14 H 0.10 3.00 7.50 -52.49 -0.39 2.60 16 15 C 0.11 3.09 4.50 -17.49 -0.08 3.02 16 16 N -0.83 -24.88 13.96 55.49 0.77 -24.11 16 17 Si 0.89 22.84 26.05 -169.99 -4.43 18.41 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.26 -6.25 3.49 56.52 0.20 -6.05 16 20 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 21 C 0.46 11.33 4.55 -11.09 -0.05 11.27 16 22 O -0.53 -14.84 13.85 5.55 0.08 -14.77 16 23 H 0.06 0.69 7.76 -51.93 -0.40 0.28 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.27 7.98 -51.93 -0.41 0.85 16 27 H 0.07 1.35 7.18 -51.93 -0.37 0.97 16 28 H 0.40 5.14 8.96 -40.82 -0.37 4.78 16 29 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 30 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 32 H 0.14 2.80 6.79 -52.48 -0.36 2.45 16 33 H 0.28 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 268.85 15.07 4.05 4.05 Total: -1.00 -31.80 268.85 -6.95 -38.75 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.18 Total: 4.13 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -2.84 Total: -4.13 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.37 Total: -46.44 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.08 Total: -14.77 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.43 Total: 18.41 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.80 -6.95 -38.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057928885.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.271 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds