Wall clock time and date at job start Mon Mar 30 2020 04:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47227 * 2 1 4 4 H 1.08998 * 109.54480 * 55.19088 * 3 2 1 5 5 N 1.47022 * 109.54569 * 295.00141 * 3 2 1 6 6 C 1.40039 * 118.07078 * 281.36105 * 5 3 2 7 7 C 1.38427 * 120.89418 * 151.95707 * 6 5 3 8 8 C 1.38316 * 119.75431 * 178.93906 * 7 6 5 9 9 C 1.38369 * 120.19011 * 0.02562 * 8 7 6 10 10 C 1.38193 * 120.38683 * 0.20144 * 9 8 7 11 11 C 1.38750 * 119.87220 * 359.97438 * 10 9 8 12 12 N 1.39640 * 120.62136 * 179.53776 * 11 10 9 13 13 C 1.37096 * 119.55292 * 9.75544 * 12 11 10 14 14 H 1.08000 * 119.99910 * 39.59656 * 13 12 11 15 15 C 1.38863 * 119.99806 * 219.59289 * 13 12 11 16 16 N 1.31445 * 119.99678 * 209.21994 * 15 13 12 17 17 Si 1.86794 * 120.00232 * 29.21571 * 15 13 12 18 18 H 1.48500 * 109.47042 * 95.31230 * 17 15 13 19 19 H 1.48502 * 109.47472 * 335.31312 * 17 15 13 20 20 H 1.48496 * 109.47461 * 215.31347 * 17 15 13 21 21 C 1.34541 * 120.88800 * 190.03820 * 12 11 10 22 22 O 1.21284 * 119.63638 * 186.53471 * 21 12 11 23 23 H 1.09000 * 109.47129 * 60.00186 * 1 2 3 24 24 H 1.09002 * 109.46973 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47111 * 299.99790 * 1 2 3 26 26 H 1.09006 * 109.46775 * 239.99925 * 2 1 3 27 27 H 1.08998 * 109.47057 * 120.00585 * 2 1 3 28 28 H 0.97000 * 120.96020 * 101.39526 * 5 3 2 29 29 H 1.08005 * 120.12022 * 358.95966 * 7 6 5 30 30 H 1.07998 * 119.90944 * 180.02562 * 8 7 6 31 31 H 1.08001 * 119.80262 * 180.21368 * 9 8 7 32 32 H 1.08003 * 120.06426 * 179.97438 * 10 9 8 33 33 H 0.97003 * 119.99312 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6088 1.9818 0.8434 5 7 1.6519 2.1015 -1.2557 6 6 2.4042 1.8260 -2.4043 7 6 1.8330 1.9013 -3.6630 8 6 2.6036 1.6458 -4.7829 9 6 3.9404 1.3155 -4.6471 10 6 4.5164 1.2338 -3.3936 11 6 3.7512 1.4847 -2.2637 12 7 4.3149 1.3972 -0.9891 13 6 5.6726 1.2597 -0.8582 14 1 6.3363 1.8095 -1.5090 15 6 6.1945 0.4135 0.1113 16 7 7.3696 0.6681 0.6423 17 14 5.2264 -1.0865 0.6610 18 1 5.6788 -2.2755 -0.1050 19 1 3.7797 -0.8598 0.4142 20 1 5.4510 -1.3168 2.1107 21 6 3.5429 1.4404 0.1119 22 8 4.0621 1.4825 1.2072 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.8970 2.7097 -1.2874 29 1 0.7897 2.1589 -3.7702 30 1 2.1606 1.7042 -5.7661 31 1 4.5371 1.1206 -5.5259 32 1 5.5603 0.9752 -3.2937 33 1 7.7339 0.0772 1.3199 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057928885.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:31 Heat of formation + Delta-G solvation = -7.668995 kcal Electronic energy + Delta-G solvation = -18449.242271 eV Core-core repulsion = 15667.396756 eV Total energy + Delta-G solvation = -2781.845516 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.09092 -39.40767 -37.39855 -36.35880 -34.30950 -33.60048 -30.72707 -29.85122 -28.41062 -26.16022 -23.98295 -23.14753 -22.86896 -20.41219 -19.08797 -18.99816 -18.20470 -17.46149 -16.25884 -16.16599 -15.90554 -15.68088 -15.17064 -14.94429 -14.61449 -14.47021 -14.40103 -13.82630 -13.51439 -13.08751 -13.01697 -12.75396 -12.43393 -12.40705 -11.98583 -11.84796 -11.75780 -11.24126 -11.20268 -10.77290 -10.28480 -9.09887 -8.64882 -8.19070 -6.25668 0.47854 0.72002 1.12429 1.22021 1.29546 1.84916 2.23250 2.42526 2.57449 2.88917 3.20531 3.53415 3.94866 4.00113 4.10674 4.38281 4.41901 4.50342 4.68198 4.72167 4.79396 4.88304 5.06454 5.15379 5.17492 5.35915 5.41873 5.46792 5.67460 5.74136 5.85322 5.99945 6.30787 6.61717 6.72319 6.99488 7.21779 7.66064 8.45939 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.020210 B = 0.012646 C = 0.009100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.119990 B = 2213.687502 C = 3076.240735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.131 4.131 3 C 0.159 3.841 4 H 0.126 0.874 5 N -0.736 5.736 6 C 0.142 3.858 7 C -0.140 4.140 8 C -0.114 4.114 9 C -0.135 4.135 10 C -0.137 4.137 11 C 0.071 3.929 12 N -0.403 5.403 13 C -0.377 4.377 14 H 0.070 0.930 15 C 0.062 3.938 16 N -0.881 5.881 17 Si 0.938 3.062 18 H -0.280 1.280 19 H -0.240 1.240 20 H -0.292 1.292 21 C 0.448 3.552 22 O -0.586 6.586 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.421 0.579 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.140 0.860 32 H 0.106 0.894 33 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.860 -0.433 -8.919 19.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.171 4.171 3 C 0.049 3.951 4 H 0.144 0.856 5 N -0.376 5.376 6 C 0.040 3.960 7 C -0.162 4.162 8 C -0.133 4.133 9 C -0.155 4.155 10 C -0.158 4.158 11 C -0.028 4.028 12 N -0.113 5.113 13 C -0.503 4.503 14 H 0.088 0.912 15 C -0.146 4.146 16 N -0.515 5.515 17 Si 0.763 3.237 18 H -0.207 1.207 19 H -0.164 1.164 20 H -0.219 1.219 21 C 0.239 3.761 22 O -0.469 6.469 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.260 0.740 29 H 0.176 0.824 30 H 0.175 0.825 31 H 0.158 0.842 32 H 0.124 0.876 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.315 -0.508 -8.024 18.189 hybrid contribution 0.778 -0.401 0.826 1.203 sum -15.537 -0.909 -7.199 17.147 Atomic orbital electron populations 1.21617 0.91253 1.02750 1.03109 1.21984 0.99439 0.94320 1.01333 1.21156 0.88032 0.96411 0.89537 0.85621 1.44194 1.36226 1.52920 1.04260 1.17690 0.87762 1.01372 0.89164 1.20810 1.00993 1.05341 0.89088 1.21220 0.93059 0.99775 0.99256 1.21081 0.96471 1.02384 0.95558 1.20857 0.99850 1.03149 0.91977 1.18613 0.92196 1.05911 0.86071 1.41340 1.06234 1.60115 1.03589 1.18554 0.80460 1.29080 1.22196 0.91236 1.25812 0.95729 0.99461 0.93609 1.69948 1.21138 1.36333 1.24114 0.85832 0.82150 0.78748 0.76957 1.20701 1.16368 1.21855 1.21690 0.91202 0.78869 0.84321 1.90505 1.75597 1.53184 1.27589 0.90982 0.91680 0.91319 0.93335 0.92490 0.73964 0.82421 0.82457 0.84174 0.87588 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.80 71.98 0.71 -2.03 16 2 C -0.13 -4.17 4.43 30.60 0.14 -4.03 16 3 C 0.16 5.58 3.20 44.15 0.14 5.72 16 4 H 0.13 3.87 8.14 -2.39 -0.02 3.85 16 5 N -0.74 -21.41 4.98 -320.88 -1.60 -23.01 16 6 C 0.14 4.71 6.23 38.22 0.24 4.95 16 7 C -0.14 -3.48 9.99 22.33 0.22 -3.25 16 8 C -0.11 -2.70 10.04 22.32 0.22 -2.48 16 9 C -0.14 -3.99 10.03 22.29 0.22 -3.77 16 10 C -0.14 -5.49 9.26 22.38 0.21 -5.29 16 11 C 0.07 3.06 6.44 38.37 0.25 3.30 16 12 N -0.40 -20.92 2.41 -458.97 -1.10 -22.03 16 13 C -0.38 -22.69 8.34 84.02 0.70 -21.99 16 14 H 0.07 4.46 7.50 -2.91 -0.02 4.44 16 15 C 0.06 3.78 4.50 84.90 0.38 4.17 16 16 N -0.88 -56.07 13.96 21.65 0.30 -55.77 16 17 Si 0.94 49.12 26.05 68.60 1.79 50.91 16 18 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 19 H -0.24 -11.74 3.49 99.48 0.35 -11.39 16 20 H -0.29 -15.59 7.11 99.48 0.71 -14.88 16 21 C 0.45 22.23 4.55 87.69 0.40 22.63 16 22 O -0.59 -33.95 13.85 -3.04 -0.04 -33.99 16 23 H 0.07 1.32 7.76 -2.39 -0.02 1.30 16 24 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.05 1.71 7.98 -2.38 -0.02 1.70 16 27 H 0.06 2.00 7.18 -2.39 -0.02 1.98 16 28 H 0.42 8.74 8.96 -92.71 -0.83 7.91 16 29 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 30 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 32 H 0.11 4.75 6.79 -2.91 -0.02 4.73 16 33 H 0.28 16.50 8.31 -92.71 -0.77 15.73 16 Total: -1.00 -76.07 268.85 3.11 -72.97 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -0.07 Total: 12.99 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 3.83 Total: -2.06 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -2.40 Total: -100.81 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.04 Total: -33.99 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 1.79 Total: 50.91 kcal Total: -76.07 3.11 -72.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057928885.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.298 kcal (2) G-P(sol) polarization free energy of solvation -76.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds