Wall clock time and date at job start Mon Mar 30 2020 04:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37001 * 125.07206 * 2 1 4 4 C 1.34174 * 109.91850 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.49768 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.47060 * 145.04493 * 5 4 3 7 7 O 1.42900 * 109.46984 * 25.05063 * 5 4 3 8 8 C 1.50698 * 109.47541 * 265.04679 * 5 4 3 9 9 H 1.08006 * 119.99323 * 359.97438 * 8 5 4 10 10 C 1.37868 * 120.00424 * 180.02562 * 8 5 4 11 11 N 1.31521 * 119.99689 * 359.97438 * 10 8 5 12 12 Si 1.86800 * 120.00361 * 179.97438 * 10 8 5 13 13 H 1.48498 * 109.46907 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46971 * 119.99528 * 12 10 8 15 15 H 1.48495 * 109.47024 * 239.99632 * 12 10 8 16 16 C 1.46578 * 107.01215 * 359.97438 * 4 3 2 17 17 C 1.39667 * 133.90620 * 179.97438 * 16 4 3 18 18 C 1.36526 * 119.86623 * 180.25839 * 17 16 4 19 19 C 1.39444 * 120.45423 * 359.49338 * 18 17 16 20 20 N 1.39803 * 119.74765 * 180.24032 * 19 18 17 21 21 C 1.38377 * 120.50171 * 0.50750 * 19 18 17 22 22 C 1.37700 * 125.07577 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.47158 * 90.02377 * 1 2 3 24 24 H 1.08995 * 109.46901 * 210.02485 * 1 2 3 25 25 H 1.08999 * 109.47206 * 330.02571 * 1 2 3 26 26 H 1.08001 * 125.04516 * 0.02562 * 3 2 1 27 27 H 0.96710 * 113.99542 * 299.99292 * 7 5 4 28 28 H 0.97003 * 119.99636 * 179.97438 * 11 10 8 29 29 H 1.08002 * 120.06267 * 359.97438 * 17 16 4 30 30 H 1.08000 * 119.76849 * 179.72691 * 18 17 16 31 31 H 0.97001 * 119.99471 * 180.27442 * 20 19 18 32 32 H 0.96997 * 119.99601 * 0.26148 * 20 19 18 33 33 H 1.08000 * 120.13895 * 179.72644 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2523 1.1213 0.0000 4 6 3.5473 0.7705 0.0006 5 6 4.7292 1.7055 0.0002 6 1 5.5366 1.2708 0.5895 7 8 4.3453 2.9587 0.5697 8 6 5.1997 1.9201 -1.4153 9 1 4.6937 1.4281 -2.2329 10 6 6.2766 2.7434 -1.6665 11 7 6.8930 3.3421 -0.6708 12 14 6.8603 3.0088 -3.4210 13 1 6.0043 2.2290 -4.3507 14 1 6.7708 4.4519 -3.7595 15 1 8.2691 2.5570 -3.5477 16 6 3.5949 -0.6945 0.0016 17 6 4.6320 -1.6299 0.0020 18 6 4.3440 -2.9644 -0.0023 19 6 3.0199 -3.4017 0.0034 20 7 2.7418 -4.7718 0.0040 21 6 1.9791 -2.4898 0.0030 22 6 2.2563 -1.1269 0.0005 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3633 0.8902 0.5134 26 1 1.8849 2.1369 0.0004 27 1 3.6295 3.4034 0.0953 28 1 7.6510 3.9211 -0.8475 29 1 5.6598 -1.2981 0.0012 30 1 5.1472 -3.6864 -0.0064 31 1 1.8220 -5.0799 0.0039 32 1 3.4686 -5.4141 0.0042 33 1 0.9557 -2.8349 0.0030 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075139550.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:25 Heat of formation + Delta-G solvation = 12.503684 kcal Electronic energy + Delta-G solvation = -17395.128592 eV Core-core repulsion = 14614.157830 eV Total energy + Delta-G solvation = -2780.970763 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.61526 -37.33438 -35.55356 -33.54260 -32.05411 -31.39561 -29.80531 -27.46761 -26.79969 -25.18377 -22.58647 -21.89210 -20.69994 -18.71500 -16.98032 -16.72364 -16.35329 -15.94796 -14.87000 -14.78340 -14.51807 -14.15687 -13.56181 -13.24710 -12.81291 -12.80123 -12.63758 -12.41118 -12.13221 -11.58981 -11.14032 -10.99033 -10.83231 -10.80430 -10.45388 -10.09969 -9.62124 -9.14543 -8.65302 -8.40672 -8.15622 -7.16358 -6.55010 -5.90400 -4.08834 1.84509 2.27522 3.32349 3.36565 3.40199 3.44658 3.56487 4.13841 4.46135 4.59004 5.04177 5.28502 5.33020 5.39196 5.53163 5.56476 5.61584 5.88729 6.04052 6.17060 6.23385 6.43394 6.68381 6.71941 6.76137 7.14366 7.24505 7.53183 7.65533 7.85394 7.92780 7.97104 7.98704 8.11747 8.29020 8.95135 9.44059 9.66805 11.11375 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023718 B = 0.007057 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.247794 B = 3966.789063 C = 4595.078982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.496 5.496 3 C 0.000 4.000 4 C -0.125 4.125 5 C 0.288 3.712 6 H 0.065 0.935 7 O -0.561 6.561 8 C -0.552 4.552 9 H 0.057 0.943 10 C 0.077 3.923 11 N -0.863 5.863 12 Si 0.888 3.112 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.283 1.283 16 C -0.143 4.143 17 C -0.008 4.008 18 C -0.224 4.224 19 C 0.227 3.773 20 N -0.885 5.885 21 C -0.230 4.230 22 C 0.142 3.858 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.158 0.842 27 H 0.343 0.657 28 H 0.259 0.741 29 H 0.126 0.874 30 H 0.114 0.886 31 H 0.391 0.609 32 H 0.394 0.606 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.837 -11.203 1.321 15.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.182 5.182 3 C -0.120 4.120 4 C -0.131 4.131 5 C 0.230 3.770 6 H 0.082 0.918 7 O -0.364 6.364 8 C -0.591 4.591 9 H 0.075 0.925 10 C -0.128 4.128 11 N -0.499 5.499 12 Si 0.715 3.285 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.209 1.209 16 C -0.149 4.149 17 C -0.027 4.027 18 C -0.247 4.247 19 C 0.123 3.877 20 N -0.425 5.425 21 C -0.257 4.257 22 C 0.034 3.966 23 H 0.077 0.923 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.175 0.825 27 H 0.186 0.814 28 H 0.069 0.931 29 H 0.144 0.856 30 H 0.132 0.868 31 H 0.218 0.782 32 H 0.222 0.778 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.528 -11.102 1.814 15.407 hybrid contribution -0.316 -0.121 -1.506 1.544 sum -10.844 -11.223 0.308 15.608 Atomic orbital electron populations 1.21724 0.78615 1.03136 1.01978 1.43615 1.04857 1.04399 1.65358 1.21236 0.90041 0.90099 1.10614 1.21940 0.95669 0.92560 1.02963 1.17864 0.86943 0.78571 0.93617 0.91770 1.86606 1.56827 1.36379 1.56553 1.21620 1.15136 1.29537 0.92760 0.92492 1.25050 0.95859 0.95199 0.96696 1.70095 1.20443 1.28971 1.30400 0.86628 0.78654 0.77876 0.85340 1.19730 1.20981 1.20916 1.18994 0.91583 0.93420 1.10932 1.20184 0.98646 0.91104 0.92777 1.20030 0.93931 0.95874 1.14861 1.17227 0.92791 0.83508 0.94157 1.42346 1.09782 1.03565 1.86785 1.18950 0.97158 0.89195 1.20447 1.17869 0.90253 0.87463 1.01042 0.92277 0.91090 0.90551 0.82475 0.81356 0.93112 0.85625 0.86784 0.78160 0.77811 0.87571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 11.03 59.85 0.66 1.72 16 2 N -0.50 -8.68 3.18 -121.78 -0.39 -9.07 16 3 C 0.00 0.00 10.63 -16.67 -0.18 -0.17 16 4 C -0.12 -2.86 5.39 -102.69 -0.55 -3.41 16 5 C 0.29 7.58 3.35 -29.04 -0.10 7.48 16 6 H 0.06 1.85 8.14 -51.93 -0.42 1.43 16 7 O -0.56 -14.66 12.52 -35.23 -0.44 -15.10 16 8 C -0.55 -15.50 8.74 -34.44 -0.30 -15.80 16 9 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 10 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 11 N -0.86 -25.65 12.84 55.43 0.71 -24.94 16 12 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 C -0.14 -3.07 6.35 -105.08 -0.67 -3.74 16 17 C -0.01 -0.16 10.04 -39.67 -0.40 -0.55 16 18 C -0.22 -3.68 9.81 -39.75 -0.39 -4.07 16 19 C 0.23 3.44 6.75 -83.72 -0.56 2.87 16 20 N -0.88 -9.47 9.09 32.44 0.29 -9.17 16 21 C -0.23 -3.73 9.79 -39.22 -0.38 -4.11 16 22 C 0.14 2.69 6.80 -84.00 -0.57 2.12 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.16 2.70 7.39 -52.49 -0.39 2.31 16 27 H 0.34 7.79 8.09 45.56 0.37 8.15 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.13 2.44 8.06 -52.49 -0.42 2.02 16 30 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.39 3.38 8.83 -40.82 -0.36 3.02 16 32 H 0.39 3.44 8.84 -40.82 -0.36 3.08 16 33 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 288.47 15.07 4.35 4.35 Total: -1.00 -33.46 288.47 -7.28 -40.74 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -3.24 Total: 12.25 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -3.54 Total: -15.58 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.62 Total: -43.17 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.44 Total: -15.10 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.46 -7.28 -40.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075139550.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.242 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds