Wall clock time and date at job start Mon Mar 30 2020 04:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37001 * 125.07206 * 2 1 4 4 C 1.34174 * 109.91850 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.49768 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.47060 * 145.04493 * 5 4 3 7 7 O 1.42900 * 109.46984 * 25.05063 * 5 4 3 8 8 C 1.50698 * 109.47541 * 265.04679 * 5 4 3 9 9 H 1.08006 * 119.99323 * 359.97438 * 8 5 4 10 10 C 1.37868 * 120.00424 * 180.02562 * 8 5 4 11 11 N 1.31521 * 119.99689 * 359.97438 * 10 8 5 12 12 Si 1.86800 * 120.00361 * 179.97438 * 10 8 5 13 13 H 1.48498 * 109.46907 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46971 * 119.99528 * 12 10 8 15 15 H 1.48495 * 109.47024 * 239.99632 * 12 10 8 16 16 C 1.46578 * 107.01215 * 359.97438 * 4 3 2 17 17 C 1.39667 * 133.90620 * 179.97438 * 16 4 3 18 18 C 1.36526 * 119.86623 * 180.25839 * 17 16 4 19 19 C 1.39444 * 120.45423 * 359.49338 * 18 17 16 20 20 N 1.39803 * 119.74765 * 180.24032 * 19 18 17 21 21 C 1.38377 * 120.50171 * 0.50750 * 19 18 17 22 22 C 1.37700 * 125.07577 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.47158 * 90.02377 * 1 2 3 24 24 H 1.08995 * 109.46901 * 210.02485 * 1 2 3 25 25 H 1.08999 * 109.47206 * 330.02571 * 1 2 3 26 26 H 1.08001 * 125.04516 * 0.02562 * 3 2 1 27 27 H 0.96710 * 113.99542 * 299.99292 * 7 5 4 28 28 H 0.97003 * 119.99636 * 179.97438 * 11 10 8 29 29 H 1.08002 * 120.06267 * 359.97438 * 17 16 4 30 30 H 1.08000 * 119.76849 * 179.72691 * 18 17 16 31 31 H 0.97001 * 119.99471 * 180.27442 * 20 19 18 32 32 H 0.96997 * 119.99601 * 0.26148 * 20 19 18 33 33 H 1.08000 * 120.13895 * 179.72644 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2523 1.1213 0.0000 4 6 3.5473 0.7705 0.0006 5 6 4.7292 1.7055 0.0002 6 1 5.5366 1.2708 0.5895 7 8 4.3453 2.9587 0.5697 8 6 5.1997 1.9201 -1.4153 9 1 4.6937 1.4281 -2.2329 10 6 6.2766 2.7434 -1.6665 11 7 6.8930 3.3421 -0.6708 12 14 6.8603 3.0088 -3.4210 13 1 6.0043 2.2290 -4.3507 14 1 6.7708 4.4519 -3.7595 15 1 8.2691 2.5570 -3.5477 16 6 3.5949 -0.6945 0.0016 17 6 4.6320 -1.6299 0.0020 18 6 4.3440 -2.9644 -0.0023 19 6 3.0199 -3.4017 0.0034 20 7 2.7418 -4.7718 0.0040 21 6 1.9791 -2.4898 0.0030 22 6 2.2563 -1.1269 0.0005 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3633 0.8902 0.5134 26 1 1.8849 2.1369 0.0004 27 1 3.6295 3.4034 0.0953 28 1 7.6510 3.9211 -0.8475 29 1 5.6598 -1.2981 0.0012 30 1 5.1472 -3.6864 -0.0064 31 1 1.8220 -5.0799 0.0039 32 1 3.4686 -5.4141 0.0042 33 1 0.9557 -2.8349 0.0030 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075139550.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:25 Heat of formation + Delta-G solvation = -12.157741 kcal Electronic energy + Delta-G solvation = -17396.197992 eV Core-core repulsion = 14614.157830 eV Total energy + Delta-G solvation = -2782.040162 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.00748 -38.62333 -37.50261 -34.75983 -34.23649 -32.79415 -31.08345 -29.30386 -28.08745 -26.75340 -24.40794 -23.29048 -22.01659 -20.24949 -19.02023 -18.12557 -17.60193 -17.22385 -16.64718 -16.13404 -16.02478 -15.86527 -14.99042 -14.88303 -14.48934 -14.21258 -13.93655 -13.89439 -13.29333 -13.15902 -12.99846 -12.83983 -12.53004 -12.40057 -12.05181 -11.87127 -11.16439 -10.90060 -10.71997 -10.29572 -9.81129 -8.55281 -8.11722 -7.81317 -6.33742 0.44802 0.93505 1.39672 1.40521 1.53686 2.00408 2.11639 2.44361 3.14238 3.15520 3.16854 3.96539 4.06877 4.17040 4.31597 4.37155 4.53808 4.61532 4.72107 4.75493 4.81869 4.94583 5.12063 5.15323 5.42771 5.66395 5.71840 5.82555 5.90915 6.11742 6.19001 6.40068 6.65008 6.76052 6.79385 7.17039 7.36167 7.58211 8.95038 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023718 B = 0.007057 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.247794 B = 3966.789063 C = 4595.078982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.493 5.493 3 C 0.018 3.982 4 C -0.178 4.178 5 C 0.297 3.703 6 H 0.018 0.982 7 O -0.576 6.576 8 C -0.561 4.561 9 H 0.047 0.953 10 C 0.026 3.974 11 N -0.901 5.901 12 Si 0.958 3.042 13 H -0.270 1.270 14 H -0.274 1.274 15 H -0.277 1.277 16 C -0.186 4.186 17 C -0.041 4.041 18 C -0.217 4.217 19 C 0.235 3.765 20 N -0.863 5.863 21 C -0.231 4.231 22 C 0.132 3.868 23 H 0.073 0.927 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.179 0.821 27 H 0.357 0.643 28 H 0.262 0.738 29 H 0.104 0.896 30 H 0.139 0.861 31 H 0.406 0.594 32 H 0.407 0.593 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.173 -13.082 0.375 18.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.178 5.178 3 C -0.104 4.104 4 C -0.185 4.185 5 C 0.239 3.761 6 H 0.036 0.964 7 O -0.380 6.380 8 C -0.599 4.599 9 H 0.065 0.935 10 C -0.175 4.175 11 N -0.539 5.539 12 Si 0.783 3.217 13 H -0.194 1.194 14 H -0.200 1.200 15 H -0.203 1.203 16 C -0.191 4.191 17 C -0.060 4.060 18 C -0.239 4.239 19 C 0.128 3.872 20 N -0.404 5.404 21 C -0.258 4.258 22 C 0.024 3.976 23 H 0.092 0.908 24 H 0.111 0.889 25 H 0.115 0.885 26 H 0.196 0.804 27 H 0.202 0.798 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.157 0.843 31 H 0.236 0.764 32 H 0.237 0.763 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.910 -13.042 0.866 18.372 hybrid contribution 0.340 0.335 -1.156 1.251 sum -12.570 -12.708 -0.290 17.876 Atomic orbital electron populations 1.22112 0.75075 1.05300 1.03609 1.43870 1.06800 1.03134 1.64026 1.21445 0.89448 0.91649 1.07880 1.21571 0.95809 0.93266 1.07843 1.17402 0.87746 0.79152 0.91778 0.96379 1.86518 1.57644 1.36871 1.56953 1.21822 1.15352 1.29283 0.93422 0.93501 1.25878 0.95845 0.94826 1.00996 1.70223 1.21094 1.29844 1.32732 0.85527 0.78114 0.78074 0.79973 1.19422 1.19960 1.20293 1.19244 0.93709 0.93007 1.13181 1.20209 0.97626 0.92702 0.95452 1.20272 0.95693 0.94871 1.13062 1.17285 0.91951 0.85385 0.92547 1.42264 1.11371 1.01806 1.84986 1.19261 0.98991 0.87965 1.19571 1.18140 0.89351 0.88908 1.01218 0.90801 0.88932 0.88544 0.80436 0.79817 0.92902 0.87786 0.84306 0.76379 0.76304 0.84311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.63 11.03 127.77 1.41 3.04 16 2 N -0.49 -16.42 3.18 -539.21 -1.72 -18.14 16 3 C 0.02 0.72 10.63 82.96 0.88 1.60 16 4 C -0.18 -8.53 5.39 -18.61 -0.10 -8.63 16 5 C 0.30 16.67 3.35 29.10 0.10 16.77 16 6 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 7 O -0.58 -31.51 12.52 -148.98 -1.87 -33.38 16 8 C -0.56 -32.90 8.74 25.60 0.22 -32.68 16 9 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 10 C 0.03 1.53 5.40 84.65 0.46 1.99 16 11 N -0.90 -55.53 12.84 21.45 0.28 -55.26 16 12 Si 0.96 45.22 29.54 68.60 2.03 47.24 16 13 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 14 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 15 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 16 C -0.19 -8.24 6.35 -20.16 -0.13 -8.37 16 17 C -0.04 -1.66 10.04 22.21 0.22 -1.44 16 18 C -0.22 -6.92 9.81 22.16 0.22 -6.70 16 19 C 0.23 6.46 6.75 38.19 0.26 6.71 16 20 N -0.86 -14.88 9.09 -51.28 -0.47 -15.35 16 21 C -0.23 -6.78 9.79 22.50 0.22 -6.56 16 22 C 0.13 4.88 6.80 39.02 0.27 5.14 16 23 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.09 1.53 8.10 -2.39 -0.02 1.51 16 25 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.18 5.97 7.39 -2.91 -0.02 5.94 16 27 H 0.36 16.75 8.09 -74.05 -0.60 16.15 16 28 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 29 H 0.10 4.50 8.06 -2.91 -0.02 4.47 16 30 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.41 5.06 8.83 -92.71 -0.82 4.24 16 32 H 0.41 5.40 8.84 -92.71 -0.82 4.59 16 33 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -76.02 288.47 1.20 -74.82 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: -1.08 Total: 29.19 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 4.02 Total: -29.13 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -1.91 Total: -88.74 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -1.87 Total: -33.38 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -76.02 1.20 -74.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075139550.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.663 kcal (2) G-P(sol) polarization free energy of solvation -76.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds