Wall clock time and date at job start Mon Mar 30 2020 03:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30116 * 124.94994 * 2 1 4 4 C 1.35779 * 109.64172 * 180.26519 * 3 2 1 5 5 C 1.39735 * 133.59811 * 179.74585 * 4 3 2 6 6 C 1.36611 * 119.88615 * 180.02562 * 5 4 3 7 7 C 1.38775 * 120.66707 * 359.96064 * 6 5 4 8 8 C 1.37848 * 120.45059 * 0.02562 * 7 6 5 9 9 C 1.38838 * 119.69520 * 0.02562 * 8 7 6 10 10 N 1.36035 * 124.95261 * 179.84668 * 2 1 3 11 11 C 1.46496 * 126.34344 * 0.02562 * 10 2 1 12 12 C 1.52996 * 109.47491 * 269.68811 * 11 10 2 13 13 H 1.09004 * 109.47066 * 55.00408 * 12 11 10 14 14 O 1.42903 * 109.47446 * 295.00284 * 12 11 10 15 15 C 1.50702 * 109.47159 * 175.00205 * 12 11 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 12 11 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 12 11 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 12 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 12 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 H 1.08992 * 109.47102 * 270.15251 * 1 2 3 24 24 H 1.09003 * 109.46535 * 30.15290 * 1 2 3 25 25 H 1.09001 * 109.46628 * 150.14856 * 1 2 3 26 26 H 1.08001 * 120.06314 * 0.02562 * 5 4 3 27 27 H 1.08004 * 119.66307 * 179.97438 * 6 5 4 28 28 H 1.08001 * 119.77168 * 180.02562 * 7 6 5 29 29 H 1.08003 * 120.15204 * 179.97438 * 8 7 6 30 30 H 1.09005 * 109.47196 * 149.68814 * 11 10 2 31 31 H 1.09000 * 109.47651 * 29.69232 * 11 10 2 32 32 H 0.96697 * 113.99557 * 300.00558 * 14 12 11 33 33 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2524 1.0665 0.0000 4 6 3.5620 0.7080 -0.0059 5 6 4.7586 1.4297 -0.0130 6 6 5.9532 0.7670 -0.0184 7 6 5.9931 -0.6202 -0.0161 8 6 4.8253 -1.3527 -0.0088 9 6 3.6019 -0.6965 -0.0043 10 7 2.2864 -1.1150 0.0030 11 6 1.8166 -2.5026 0.0062 12 6 1.6600 -2.9847 1.4497 13 1 1.0045 -2.3028 1.9914 14 8 2.9408 -3.0178 2.0826 15 6 1.0611 -4.3676 1.4552 16 1 0.8170 -4.8542 0.5224 17 6 0.8305 -5.0143 2.6510 18 7 1.1281 -4.4220 3.7869 19 14 0.0953 -6.7315 2.6575 20 1 0.9906 -7.6561 1.9165 21 1 -0.0522 -7.2014 4.0585 22 1 -1.2372 -6.7021 2.0028 23 1 -0.3633 0.0027 1.0276 24 1 -0.3632 0.8887 -0.5162 25 1 -0.3632 -0.8913 -0.5115 26 1 4.7392 2.5095 -0.0143 27 1 6.8759 1.3283 -0.0243 28 1 6.9456 -1.1293 -0.0200 29 1 4.8620 -2.4321 -0.0074 30 1 2.5406 -3.1325 -0.5107 31 1 0.8547 -2.5618 -0.5031 32 1 3.5768 -3.6058 1.6527 33 1 0.9655 -4.8768 4.6281 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075625346.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:12 Heat of formation + Delta-G solvation = -6.816330 kcal Electronic energy + Delta-G solvation = -17653.316247 eV Core-core repulsion = 14871.507706 eV Total energy + Delta-G solvation = -2781.808541 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.05182 -38.52294 -37.84323 -34.78555 -34.29073 -32.32038 -31.49342 -29.95614 -28.38755 -26.96693 -23.58007 -23.00732 -22.77310 -20.81100 -19.26995 -18.22951 -17.57406 -17.04065 -16.70494 -16.18686 -15.92417 -15.74938 -14.99698 -14.74683 -14.65638 -14.09135 -13.93045 -13.51843 -13.31571 -13.12122 -12.82771 -12.72936 -12.62905 -12.39256 -12.28168 -12.09274 -11.67236 -11.06064 -10.90504 -10.76042 -10.33558 -9.11309 -8.92374 -8.18727 -6.47560 0.08969 0.69385 1.42252 1.43190 1.51489 1.75160 1.89878 2.37688 3.00679 3.08152 3.28614 3.61303 3.81254 4.10640 4.18046 4.23082 4.31279 4.43684 4.53932 4.59840 4.60951 4.69840 4.79502 4.95788 5.00374 5.26208 5.46964 5.59848 5.63775 5.64426 5.73000 5.90039 6.07649 6.28343 6.64686 6.96817 7.25959 7.42352 8.85242 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.030697 B = 0.006627 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.924142 B = 4224.192208 C = 4796.292469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.265 3.735 3 N -0.535 5.535 4 C 0.007 3.993 5 C -0.089 4.089 6 C -0.124 4.124 7 C -0.108 4.108 8 C -0.113 4.113 9 C 0.033 3.967 10 N -0.477 5.477 11 C 0.092 3.908 12 C 0.225 3.775 13 H 0.020 0.980 14 O -0.574 6.574 15 C -0.585 4.585 16 H 0.074 0.926 17 C 0.028 3.972 18 N -0.900 5.900 19 Si 0.964 3.036 20 H -0.265 1.265 21 H -0.290 1.290 22 H -0.264 1.264 23 H 0.084 0.916 24 H 0.110 0.890 25 H 0.095 0.905 26 H 0.136 0.864 27 H 0.162 0.838 28 H 0.160 0.840 29 H 0.126 0.874 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.354 0.646 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.799 4.892 -9.470 11.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.000 4.000 3 N -0.257 5.257 4 C -0.112 4.112 5 C -0.109 4.109 6 C -0.144 4.144 7 C -0.127 4.127 8 C -0.134 4.134 9 C -0.077 4.077 10 N -0.165 5.165 11 C -0.029 4.029 12 C 0.167 3.833 13 H 0.038 0.962 14 O -0.378 6.378 15 C -0.623 4.623 16 H 0.092 0.908 17 C -0.175 4.175 18 N -0.536 5.536 19 Si 0.788 3.212 20 H -0.190 1.190 21 H -0.216 1.216 22 H -0.189 1.189 23 H 0.103 0.897 24 H 0.129 0.871 25 H 0.113 0.887 26 H 0.153 0.847 27 H 0.180 0.820 28 H 0.177 0.823 29 H 0.144 0.856 30 H 0.111 0.889 31 H 0.127 0.873 32 H 0.199 0.801 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.155 6.003 -8.879 11.495 hybrid contribution -0.112 -2.067 0.181 2.078 sum 4.043 3.936 -8.698 10.368 Atomic orbital electron populations 1.20493 0.82332 1.05736 1.04564 1.24283 0.97247 0.80823 0.97681 1.70314 1.01568 1.28310 1.25502 1.19598 0.92788 0.91377 1.07426 1.20254 0.89244 1.00145 1.01236 1.20992 0.97738 0.94542 1.01097 1.21260 0.97617 0.94273 0.99551 1.20274 0.89304 1.00136 1.03650 1.19283 0.86430 0.95291 1.06696 1.45560 1.04687 1.08027 1.58200 1.22797 1.01784 0.77473 1.00877 1.19529 0.82493 0.94789 0.86497 0.96189 1.86602 1.24203 1.67922 1.59098 1.21843 1.44978 1.02023 0.93501 0.90837 1.25915 0.94479 1.02016 0.95068 1.70233 1.45982 1.39278 0.98099 0.85542 0.79365 0.79268 0.76992 1.19007 1.21609 1.18901 0.89745 0.87130 0.88652 0.84656 0.82023 0.82257 0.85602 0.88900 0.87300 0.80081 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.06 10.17 71.24 0.72 -1.34 16 2 C 0.26 9.99 7.85 137.92 1.08 11.07 16 3 N -0.53 -21.69 11.27 -179.96 -2.03 -23.72 16 4 C 0.01 0.26 7.23 39.45 0.29 0.54 16 5 C -0.09 -2.80 10.05 22.25 0.22 -2.58 16 6 C -0.12 -3.12 9.96 22.02 0.22 -2.90 16 7 C -0.11 -2.81 10.03 22.31 0.22 -2.58 16 8 C -0.11 -3.70 10.05 22.32 0.22 -3.47 16 9 C 0.03 1.27 6.74 38.86 0.26 1.53 16 10 N -0.48 -18.53 2.75 -505.60 -1.39 -19.92 16 11 C 0.09 3.46 5.51 86.38 0.48 3.93 16 12 C 0.23 10.80 3.07 29.85 0.09 10.89 16 13 H 0.02 1.12 8.14 -2.38 -0.02 1.11 16 14 O -0.57 -29.05 12.53 -148.98 -1.87 -30.91 16 15 C -0.59 -29.37 8.76 25.60 0.22 -29.15 16 16 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 17 C 0.03 1.50 5.40 84.66 0.46 1.96 16 18 N -0.90 -52.21 12.83 21.45 0.28 -51.93 16 19 Si 0.96 40.79 29.54 68.60 2.03 42.82 16 20 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 23 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 24 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.09 2.34 7.01 -2.39 -0.02 2.32 16 26 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 27 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 28 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 29 H 0.13 3.81 8.06 -2.91 -0.02 3.78 16 30 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 31 H 0.11 3.60 6.99 -2.39 -0.02 3.59 16 32 H 0.35 15.62 9.04 -74.06 -0.67 14.96 16 33 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 Total: -1.00 -69.10 288.96 1.96 -67.14 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.45 Total: 28.63 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 4.50 Total: -12.10 kcal Atomic # 7 Polarization: -92.43 SS G_CDS: -3.15 Total: -95.57 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -1.87 Total: -30.91 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -69.10 1.96 -67.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075625346.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.320 kcal (2) G-P(sol) polarization free energy of solvation -69.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds