Wall clock time and date at job start Mon Mar 30 2020 04:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.61718 * 2 1 4 4 N 1.47046 * 109.54419 * 120.22938 * 2 1 3 5 5 C 1.40189 * 117.89974 * 77.85937 * 4 2 1 6 6 C 1.38341 * 121.08455 * 209.31269 * 5 4 2 7 7 C 1.38375 * 119.72871 * 179.78977 * 6 5 4 8 8 C 1.38282 * 120.18146 * 359.97438 * 7 6 5 9 9 C 1.38299 * 120.36738 * 0.07961 * 8 7 6 10 10 C 1.38541 * 119.85725 * 0.04747 * 9 8 7 11 11 N 1.40016 * 120.72088 * 179.71381 * 10 9 8 12 12 C 1.46503 * 119.66280 * 346.09718 * 11 10 9 13 13 C 1.50696 * 109.47410 * 270.25164 * 12 11 10 14 14 H 1.08002 * 119.99895 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00309 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00099 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99927 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47269 * 89.99789 * 17 15 13 19 19 H 1.48501 * 109.46987 * 210.00034 * 17 15 13 20 20 H 1.48500 * 109.46800 * 329.99831 * 17 15 13 21 21 C 1.34649 * 120.68511 * 166.35442 * 11 10 9 22 22 O 1.21303 * 119.61657 * 177.37480 * 21 11 10 23 23 H 1.08997 * 109.46977 * 180.22333 * 1 2 3 24 24 H 1.08997 * 109.46715 * 300.22407 * 1 2 3 25 25 H 1.08995 * 109.46976 * 60.21634 * 1 2 3 26 26 H 0.97006 * 121.04850 * 257.87537 * 4 2 1 27 27 H 1.07996 * 120.13575 * 359.77046 * 6 5 4 28 28 H 1.07994 * 119.90859 * 180.02562 * 7 6 5 29 29 H 1.07992 * 119.81846 * 180.09086 * 8 7 6 30 30 H 1.07999 * 120.07608 * 180.02562 * 9 8 7 31 31 H 1.08998 * 109.47057 * 30.25335 * 12 11 10 32 32 H 1.09002 * 109.47074 * 150.25362 * 12 11 10 33 33 H 0.96999 * 119.99867 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8960 1.0268 0.0000 4 7 2.0220 -0.6977 1.1973 5 6 1.9959 -2.0993 1.1969 6 6 1.8494 -2.8113 2.3740 7 6 1.8229 -4.1944 2.3406 8 6 1.9418 -4.8631 1.1361 9 6 2.0896 -4.1571 -0.0440 10 6 2.1198 -2.7722 -0.0200 11 7 2.2746 -2.0396 -1.2031 12 6 2.7083 -2.7201 -2.4258 13 6 4.2131 -2.7007 -2.5047 14 1 4.7889 -2.2291 -1.7221 15 6 4.8549 -3.2851 -3.5760 16 7 6.1681 -3.2677 -3.6451 17 14 3.8591 -4.1003 -4.9300 18 1 3.5436 -3.1012 -5.9824 19 1 4.6458 -5.2117 -5.5223 20 1 2.5961 -4.6359 -4.3614 21 6 2.0339 -0.7150 -1.2275 22 8 2.2201 -0.0907 -2.2507 23 1 -0.3633 -1.0276 0.0040 24 1 -0.3633 0.5173 0.8880 25 1 -0.3633 0.5104 -0.8919 26 1 2.3538 -0.2036 1.9633 27 1 1.7564 -2.2898 3.3151 28 1 1.7083 -4.7531 3.2577 29 1 1.9189 -5.9426 1.1166 30 1 2.1816 -4.6842 -0.9821 31 1 2.3586 -3.7523 -2.4107 32 1 2.2924 -2.2082 -3.2936 33 1 6.6196 -3.6785 -4.3990 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076888175.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:15 Heat of formation + Delta-G solvation = 7.806835 kcal Electronic energy + Delta-G solvation = -17981.377372 eV Core-core repulsion = 15200.202939 eV Total energy + Delta-G solvation = -2781.174433 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.64499 -38.14182 -35.77613 -35.02854 -32.53532 -31.18877 -29.57108 -28.58981 -27.49276 -24.13688 -22.88822 -22.48580 -20.98347 -18.44413 -17.87060 -17.18821 -16.95132 -15.59232 -15.06922 -14.74731 -14.54252 -14.20457 -13.78997 -13.62756 -13.29351 -12.71720 -12.53022 -12.42174 -12.21151 -11.74341 -11.67523 -11.29370 -11.21138 -10.80035 -10.55295 -10.39416 -10.04334 -9.72474 -9.26908 -9.10062 -8.63402 -7.85577 -6.84298 -6.12634 -4.12511 1.67055 1.81021 3.07934 3.24855 3.30141 3.32186 3.42457 3.70792 4.23368 4.34579 4.64536 5.03796 5.18197 5.20969 5.24162 5.36378 5.55362 5.65494 5.73423 5.80070 5.96222 6.09357 6.18065 6.38274 6.53336 6.65482 6.78273 6.92847 7.04669 7.16023 7.40745 7.50156 7.88757 8.10249 8.38468 8.65786 8.90816 9.45124 11.00607 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.021983 B = 0.009160 C = 0.007342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.380792 B = 3055.944284 C = 3812.726224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.144 3.856 3 H 0.113 0.887 4 N -0.753 5.753 5 C 0.153 3.847 6 C -0.150 4.150 7 C -0.122 4.122 8 C -0.130 4.130 9 C -0.116 4.116 10 C 0.132 3.868 11 N -0.524 5.524 12 C 0.206 3.794 13 C -0.528 4.528 14 H 0.075 0.925 15 C 0.075 3.925 16 N -0.893 5.893 17 Si 0.874 3.126 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.265 1.265 21 C 0.501 3.499 22 O -0.521 6.521 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.404 0.596 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.133 0.867 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.766 0.769 11.754 16.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.131 0.869 4 N -0.391 5.391 5 C 0.052 3.948 6 C -0.172 4.172 7 C -0.142 4.142 8 C -0.150 4.150 9 C -0.137 4.137 10 C 0.033 3.967 11 N -0.245 5.245 12 C 0.087 3.913 13 C -0.566 4.566 14 H 0.093 0.907 15 C -0.128 4.128 16 N -0.531 5.531 17 Si 0.701 3.299 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.190 1.190 21 C 0.287 3.713 22 O -0.395 6.395 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.241 0.759 27 H 0.138 0.862 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.151 0.849 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.545 1.152 10.799 15.850 hybrid contribution -0.008 -0.269 -0.485 0.555 sum -11.553 0.884 10.314 15.512 Atomic orbital electron populations 1.22169 0.93891 1.02993 1.02735 1.21206 0.95290 0.96890 0.83170 0.86934 1.44418 1.73786 1.02314 1.18568 1.17454 1.01221 0.83706 0.92433 1.20400 1.06697 0.94113 0.96007 1.20767 1.02322 0.93456 0.97612 1.20781 1.02876 0.99461 0.91845 1.20814 1.01818 0.91559 0.99528 1.17711 1.02201 0.91678 0.85131 1.45585 1.61107 1.07624 1.10141 1.19934 0.97110 0.92569 0.81711 1.21170 0.88763 1.37795 1.08893 0.90706 1.24821 0.94845 0.95561 0.97536 1.69889 1.07515 1.44551 1.31142 0.86881 0.80483 0.79673 0.82901 1.19792 1.20796 1.18982 1.20811 0.78419 0.82092 0.89960 1.90724 1.50978 1.64747 1.33093 0.92070 0.91247 0.91118 0.75932 0.86167 0.86427 0.86213 0.84913 0.94257 0.93975 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.38 37.16 0.35 -1.65 16 2 C 0.14 2.20 3.79 -68.77 -0.26 1.94 16 3 H 0.11 1.52 8.14 -51.93 -0.42 1.09 16 4 N -0.75 -10.67 5.54 -52.74 -0.29 -10.97 16 5 C 0.15 2.47 6.25 -83.49 -0.52 1.95 16 6 C -0.15 -2.02 10.00 -39.49 -0.39 -2.41 16 7 C -0.12 -1.59 10.04 -39.51 -0.40 -1.99 16 8 C -0.13 -1.90 10.03 -39.54 -0.40 -2.29 16 9 C -0.12 -2.08 9.32 -39.45 -0.37 -2.45 16 10 C 0.13 2.55 6.43 -83.50 -0.54 2.01 16 11 N -0.52 -11.67 2.68 -114.61 -0.31 -11.98 16 12 C 0.21 5.17 3.90 -5.19 -0.02 5.15 16 13 C -0.53 -15.49 9.94 -34.44 -0.34 -15.83 16 14 H 0.07 2.46 8.06 -52.49 -0.42 2.03 16 15 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 16 N -0.89 -27.71 13.96 55.43 0.77 -26.93 16 17 Si 0.87 21.45 27.47 -169.99 -4.67 16.78 16 18 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 21 C 0.50 10.66 6.89 -11.03 -0.08 10.59 16 22 O -0.52 -12.95 16.61 5.54 0.09 -12.85 16 23 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.40 4.52 8.96 -40.82 -0.37 4.15 16 27 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.13 2.47 6.04 -52.49 -0.32 2.15 16 31 H 0.04 0.93 4.93 -51.93 -0.26 0.67 16 32 H 0.04 1.10 6.84 -51.93 -0.36 0.75 16 33 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 278.24 15.07 4.19 4.19 Total: -1.00 -33.93 278.24 -7.11 -41.04 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -3.84 Total: 3.59 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -3.06 Total: -2.88 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.17 Total: -49.87 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.85 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.93 -7.11 -41.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076888175.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.849 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds