Wall clock time and date at job start Mon Mar 30 2020 04:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.61718 * 2 1 4 4 N 1.47046 * 109.54419 * 120.22938 * 2 1 3 5 5 C 1.40189 * 117.89974 * 77.85937 * 4 2 1 6 6 C 1.38341 * 121.08455 * 209.31269 * 5 4 2 7 7 C 1.38375 * 119.72871 * 179.78977 * 6 5 4 8 8 C 1.38282 * 120.18146 * 359.97438 * 7 6 5 9 9 C 1.38299 * 120.36738 * 0.07961 * 8 7 6 10 10 C 1.38541 * 119.85725 * 0.04747 * 9 8 7 11 11 N 1.40016 * 120.72088 * 179.71381 * 10 9 8 12 12 C 1.46503 * 119.66280 * 346.09718 * 11 10 9 13 13 C 1.50696 * 109.47410 * 270.25164 * 12 11 10 14 14 H 1.08002 * 119.99895 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00309 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00099 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99927 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47269 * 89.99789 * 17 15 13 19 19 H 1.48501 * 109.46987 * 210.00034 * 17 15 13 20 20 H 1.48500 * 109.46800 * 329.99831 * 17 15 13 21 21 C 1.34649 * 120.68511 * 166.35442 * 11 10 9 22 22 O 1.21303 * 119.61657 * 177.37480 * 21 11 10 23 23 H 1.08997 * 109.46977 * 180.22333 * 1 2 3 24 24 H 1.08997 * 109.46715 * 300.22407 * 1 2 3 25 25 H 1.08995 * 109.46976 * 60.21634 * 1 2 3 26 26 H 0.97006 * 121.04850 * 257.87537 * 4 2 1 27 27 H 1.07996 * 120.13575 * 359.77046 * 6 5 4 28 28 H 1.07994 * 119.90859 * 180.02562 * 7 6 5 29 29 H 1.07992 * 119.81846 * 180.09086 * 8 7 6 30 30 H 1.07999 * 120.07608 * 180.02562 * 9 8 7 31 31 H 1.08998 * 109.47057 * 30.25335 * 12 11 10 32 32 H 1.09002 * 109.47074 * 150.25362 * 12 11 10 33 33 H 0.96999 * 119.99867 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8960 1.0268 0.0000 4 7 2.0220 -0.6977 1.1973 5 6 1.9959 -2.0993 1.1969 6 6 1.8494 -2.8113 2.3740 7 6 1.8229 -4.1944 2.3406 8 6 1.9418 -4.8631 1.1361 9 6 2.0896 -4.1571 -0.0440 10 6 2.1198 -2.7722 -0.0200 11 7 2.2746 -2.0396 -1.2031 12 6 2.7083 -2.7201 -2.4258 13 6 4.2131 -2.7007 -2.5047 14 1 4.7889 -2.2291 -1.7221 15 6 4.8549 -3.2851 -3.5760 16 7 6.1681 -3.2677 -3.6451 17 14 3.8591 -4.1003 -4.9300 18 1 3.5436 -3.1012 -5.9824 19 1 4.6458 -5.2117 -5.5223 20 1 2.5961 -4.6359 -4.3614 21 6 2.0339 -0.7150 -1.2275 22 8 2.2201 -0.0907 -2.2507 23 1 -0.3633 -1.0276 0.0040 24 1 -0.3633 0.5173 0.8880 25 1 -0.3633 0.5104 -0.8919 26 1 2.3538 -0.2036 1.9633 27 1 1.7564 -2.2898 3.3151 28 1 1.7083 -4.7531 3.2577 29 1 1.9189 -5.9426 1.1166 30 1 2.1816 -4.6842 -0.9821 31 1 2.3586 -3.7523 -2.4107 32 1 2.2924 -2.2082 -3.2936 33 1 6.6196 -3.6785 -4.3990 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076888175.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:15 Heat of formation + Delta-G solvation = -16.641253 kcal Electronic energy + Delta-G solvation = -17982.437521 eV Core-core repulsion = 15200.202939 eV Total energy + Delta-G solvation = -2782.234582 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.08315 -39.56963 -37.12783 -36.60435 -34.71606 -32.35423 -31.05241 -30.28927 -28.77844 -25.83525 -24.23923 -23.87220 -22.56084 -19.80796 -19.35404 -19.10876 -18.45967 -17.25617 -16.62355 -16.05984 -15.98857 -15.87481 -15.18387 -14.98586 -14.83012 -14.40069 -13.99686 -13.83370 -13.54793 -13.29137 -13.19532 -12.75878 -12.59407 -12.45453 -12.22427 -11.96735 -11.84745 -11.35250 -10.96172 -10.90208 -10.61625 -9.15756 -8.41457 -8.17905 -6.48374 0.39178 0.62147 1.26981 1.31279 1.40004 1.58241 1.93285 2.24199 2.49064 2.91001 3.01114 3.29951 3.86475 4.06221 4.08033 4.26911 4.37438 4.55291 4.63480 4.66745 4.74016 4.75650 4.81586 4.94991 5.12318 5.23126 5.30734 5.44219 5.62173 5.74919 5.89225 6.08746 6.19348 6.50377 6.57994 6.83502 7.04870 7.16986 8.75877 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.021983 B = 0.009160 C = 0.007342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.380792 B = 3055.944284 C = 3812.726224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.153 3.847 3 H 0.132 0.868 4 N -0.744 5.744 5 C 0.147 3.853 6 C -0.140 4.140 7 C -0.105 4.105 8 C -0.133 4.133 9 C -0.138 4.138 10 C 0.081 3.919 11 N -0.535 5.535 12 C 0.217 3.783 13 C -0.536 4.536 14 H 0.020 0.980 15 C 0.015 3.985 16 N -0.940 5.940 17 Si 0.948 3.052 18 H -0.271 1.271 19 H -0.268 1.268 20 H -0.239 1.239 21 C 0.482 3.518 22 O -0.576 6.576 23 H 0.048 0.952 24 H 0.105 0.895 25 H 0.069 0.931 26 H 0.422 0.578 27 H 0.160 0.840 28 H 0.160 0.840 29 H 0.145 0.855 30 H 0.114 0.886 31 H 0.056 0.944 32 H 0.027 0.973 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.926 -0.148 14.203 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.044 3.956 3 H 0.150 0.850 4 N -0.384 5.384 5 C 0.046 3.954 6 C -0.162 4.162 7 C -0.124 4.124 8 C -0.153 4.153 9 C -0.159 4.159 10 C -0.016 4.016 11 N -0.256 5.256 12 C 0.096 3.904 13 C -0.574 4.574 14 H 0.038 0.962 15 C -0.184 4.184 16 N -0.580 5.580 17 Si 0.770 3.230 18 H -0.197 1.197 19 H -0.193 1.193 20 H -0.162 1.162 21 C 0.271 3.729 22 O -0.455 6.455 23 H 0.067 0.933 24 H 0.124 0.876 25 H 0.088 0.912 26 H 0.261 0.739 27 H 0.177 0.823 28 H 0.178 0.822 29 H 0.163 0.837 30 H 0.132 0.868 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.721 0.224 13.335 19.134 hybrid contribution 0.738 -0.009 -1.078 1.306 sum -12.983 0.214 12.257 17.856 Atomic orbital electron populations 1.22109 0.91312 1.02727 1.04452 1.21234 0.97038 0.96649 0.80716 0.85037 1.44366 1.73703 1.01796 1.18526 1.17713 1.00934 0.84566 0.92156 1.20871 1.04579 0.94489 0.96263 1.21303 0.99090 0.93599 0.98399 1.21114 1.02104 1.00789 0.91262 1.20910 1.03198 0.91438 1.00339 1.18136 1.05861 0.92435 0.85181 1.45573 1.61244 1.08373 1.10360 1.19551 0.94027 0.93600 0.83269 1.21282 0.90927 1.37491 1.07747 0.96207 1.25849 0.96064 0.96099 1.00344 1.70041 1.09634 1.45850 1.32454 0.85715 0.79781 0.78735 0.78810 1.19682 1.19277 1.16199 1.22094 0.77531 0.81789 0.91462 1.90671 1.53576 1.65698 1.35514 0.93297 0.87592 0.91212 0.73881 0.82292 0.82199 0.83708 0.86847 0.92610 0.95483 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.38 71.98 0.67 -2.73 16 2 C 0.15 4.54 3.79 44.15 0.17 4.71 16 3 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 4 N -0.74 -19.55 5.54 -320.78 -1.78 -21.33 16 5 C 0.15 4.50 6.25 38.16 0.24 4.74 16 6 C -0.14 -3.18 10.00 22.33 0.22 -2.95 16 7 C -0.10 -2.26 10.04 22.31 0.22 -2.03 16 8 C -0.13 -3.55 10.03 22.29 0.22 -3.33 16 9 C -0.14 -4.95 9.32 22.36 0.21 -4.75 16 10 C 0.08 3.15 6.43 38.24 0.25 3.40 16 11 N -0.53 -24.81 2.68 -634.96 -1.70 -26.52 16 12 C 0.22 11.36 3.90 85.63 0.33 11.70 16 13 C -0.54 -33.32 9.94 25.60 0.25 -33.06 16 14 H 0.02 1.39 8.06 -2.91 -0.02 1.37 16 15 C 0.02 0.92 5.47 84.65 0.46 1.38 16 16 N -0.94 -60.77 13.96 21.45 0.30 -60.47 16 17 Si 0.95 45.20 27.47 68.60 1.88 47.09 16 18 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 21 C 0.48 21.31 6.89 87.69 0.60 21.92 16 22 O -0.58 -30.24 16.61 -3.10 -0.05 -30.29 16 23 H 0.05 1.26 8.05 -2.39 -0.02 1.24 16 24 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 26 H 0.42 8.09 8.96 -92.70 -0.83 7.26 16 27 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 28 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 29 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 30 H 0.11 4.35 6.04 -2.91 -0.02 4.34 16 31 H 0.06 2.71 4.93 -2.39 -0.01 2.69 16 32 H 0.03 1.48 6.84 -2.39 -0.02 1.47 16 33 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 Total: -1.00 -80.49 278.24 2.76 -77.73 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.25 Total: 14.81 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 3.86 Total: -1.02 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -3.18 Total: -108.31 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.05 Total: -30.29 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.09 kcal Total: -80.49 2.76 -77.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076888175.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.090 kcal (2) G-P(sol) polarization free energy of solvation -80.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds