Wall clock time and date at job start Mon Mar 30 2020 04:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.61688 * 2 1 4 4 N 1.47051 * 109.54410 * 239.77802 * 2 1 3 5 5 C 1.40194 * 117.88963 * 282.15581 * 4 2 1 6 6 C 1.38334 * 121.09155 * 150.44044 * 5 4 2 7 7 C 1.38373 * 119.72988 * 180.30265 * 6 5 4 8 8 C 1.38290 * 120.18166 * 359.97438 * 7 6 5 9 9 C 1.38305 * 120.36223 * 359.94414 * 8 7 6 10 10 C 1.38537 * 119.85704 * 359.97438 * 9 8 7 11 11 N 1.40007 * 120.76918 * 180.19187 * 10 9 8 12 12 C 1.46499 * 119.64605 * 14.03030 * 11 10 9 13 13 C 1.50701 * 109.46992 * 89.99999 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46890 * 120.00210 * 17 15 13 20 20 H 1.48501 * 109.47062 * 240.00257 * 17 15 13 21 21 C 1.34651 * 120.70523 * 194.30639 * 11 10 9 22 22 O 1.21293 * 119.60479 * 182.09789 * 21 11 10 23 23 H 1.08999 * 109.46675 * 180.22485 * 1 2 3 24 24 H 1.09003 * 109.46604 * 300.22182 * 1 2 3 25 25 H 1.08996 * 109.46909 * 60.21957 * 1 2 3 26 26 H 0.97001 * 121.05687 * 102.16951 * 4 2 1 27 27 H 1.07992 * 120.13687 * 0.26801 * 6 5 4 28 28 H 1.07997 * 119.91048 * 180.02562 * 7 6 5 29 29 H 1.07998 * 119.81855 * 179.97438 * 8 7 6 30 30 H 1.08000 * 120.06572 * 180.02562 * 9 8 7 31 31 H 1.09002 * 109.47391 * 329.99989 * 12 11 10 32 32 H 1.09001 * 109.46813 * 210.00046 * 12 11 10 33 33 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8960 1.0268 0.0000 4 7 2.0220 -0.6975 -1.1974 5 6 1.9955 -2.0992 -1.1971 6 6 1.8439 -2.8111 -2.3735 7 6 1.8153 -4.1941 -2.3398 8 6 1.9382 -4.8629 -1.1357 9 6 2.0917 -4.1569 0.0436 10 6 2.1231 -2.7721 0.0194 11 7 2.2816 -2.0385 1.2012 12 6 2.7207 -2.7180 2.4226 13 6 4.2256 -2.6916 2.4987 14 1 4.7977 -2.2159 1.7159 15 6 4.8720 -3.2739 3.5684 16 7 4.1753 -3.8527 4.5219 17 14 6.7373 -3.2406 3.6631 18 1 7.2808 -2.5341 2.4753 19 1 7.1576 -2.5291 4.8970 20 1 7.2563 -4.6317 3.6926 21 6 2.0295 -0.7161 1.2286 22 8 2.2100 -0.0927 2.2534 23 1 -0.3633 -1.0277 0.0040 24 1 -0.3633 0.5173 0.8880 25 1 -0.3633 0.5104 -0.8919 26 1 2.3545 -0.2035 -1.9632 27 1 1.7478 -2.2896 -3.3143 28 1 1.6975 -4.7528 -3.2565 29 1 1.9146 -5.9425 -1.1161 30 1 2.1876 -4.6842 0.9813 31 1 2.3757 -3.7518 2.4073 32 1 2.3039 -2.2087 3.2915 33 1 4.6301 -4.2627 5.2742 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076888176.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:17 Heat of formation + Delta-G solvation = 2.604546 kcal Electronic energy + Delta-G solvation = -17942.717370 eV Core-core repulsion = 15161.317348 eV Total energy + Delta-G solvation = -2781.400021 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.55204 -38.06264 -35.69227 -34.92202 -32.59792 -31.13061 -29.42279 -28.16271 -27.24024 -24.18451 -22.91976 -22.43806 -21.14240 -18.37102 -17.77077 -17.08933 -16.61561 -15.44935 -14.96833 -14.68401 -14.47876 -14.30404 -13.74331 -13.52189 -13.13492 -12.80594 -12.48225 -12.20731 -12.05574 -11.62991 -11.39562 -11.20537 -11.06218 -10.80556 -10.53185 -10.21616 -10.06435 -9.96497 -9.14227 -9.01375 -8.48520 -7.79817 -6.80253 -6.09312 -4.14646 1.72906 1.86052 3.15606 3.28155 3.35227 3.39573 3.52869 3.78993 4.28760 4.42309 4.72389 5.09777 5.24140 5.25962 5.29818 5.42172 5.61197 5.70284 5.78731 5.87809 6.02286 6.15732 6.26074 6.51365 6.63436 6.88005 7.02619 7.11076 7.29053 7.33777 7.49778 7.85144 7.93438 8.11939 8.26376 8.71414 8.90520 9.49875 10.98154 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.008756 C = 0.007106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.040763 B = 3197.006530 C = 3939.482050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.142 3.858 3 H 0.111 0.889 4 N -0.754 5.754 5 C 0.149 3.851 6 C -0.151 4.151 7 C -0.125 4.125 8 C -0.130 4.130 9 C -0.116 4.116 10 C 0.132 3.868 11 N -0.529 5.529 12 C 0.235 3.765 13 C -0.524 4.524 14 H 0.058 0.942 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.900 3.100 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.498 3.502 22 O -0.522 6.522 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.403 0.597 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.137 0.863 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.783 2.055 -13.554 15.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.033 3.967 3 H 0.129 0.871 4 N -0.392 5.392 5 C 0.048 3.952 6 C -0.173 4.173 7 C -0.144 4.144 8 C -0.150 4.150 9 C -0.137 4.137 10 C 0.033 3.967 11 N -0.249 5.249 12 C 0.117 3.883 13 C -0.562 4.562 14 H 0.076 0.924 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.728 3.272 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.208 1.208 21 C 0.285 3.715 22 O -0.397 6.397 23 H 0.079 0.921 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.239 0.761 27 H 0.137 0.863 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.155 0.845 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.704 2.397 -12.536 14.417 hybrid contribution 1.282 0.125 -0.143 1.296 sum -5.422 2.522 -12.679 14.018 Atomic orbital electron populations 1.22168 0.93990 1.02996 1.02634 1.21217 0.95314 0.96797 0.83363 0.87118 1.44411 1.73864 1.02333 1.18562 1.17476 1.01466 0.83685 0.92538 1.20382 1.06830 0.94110 0.96008 1.20754 1.02641 0.93448 0.97591 1.20796 1.02886 0.99436 0.91881 1.20892 1.01513 0.91641 0.99641 1.17767 1.01878 0.91733 0.85305 1.45936 1.60444 1.07765 1.10785 1.19587 0.95707 0.92797 0.80230 1.21333 0.90888 1.36745 1.07270 0.92376 1.24906 0.98865 0.95013 0.95153 1.69933 1.35568 1.37152 1.10570 0.86398 0.84984 0.77720 0.78111 1.19786 1.20803 1.20786 1.20780 0.78580 0.82329 0.89831 1.90720 1.51189 1.64826 1.32953 0.92073 0.91124 0.91380 0.76080 0.86318 0.86556 0.86288 0.84542 0.93864 0.93258 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.36 37.16 0.35 -1.74 16 2 C 0.14 2.23 3.80 -68.77 -0.26 1.97 16 3 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 4 N -0.75 -10.82 5.55 -52.74 -0.29 -11.12 16 5 C 0.15 2.45 6.25 -83.49 -0.52 1.93 16 6 C -0.15 -2.07 10.00 -39.50 -0.39 -2.47 16 7 C -0.12 -1.66 10.04 -39.51 -0.40 -2.06 16 8 C -0.13 -1.95 10.03 -39.54 -0.40 -2.35 16 9 C -0.12 -2.14 9.32 -39.45 -0.37 -2.51 16 10 C 0.13 2.61 6.43 -83.50 -0.54 2.08 16 11 N -0.53 -12.07 2.68 -114.62 -0.31 -12.37 16 12 C 0.23 6.25 4.84 -5.19 -0.03 6.23 16 13 C -0.52 -15.14 9.39 -34.44 -0.32 -15.47 16 14 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 15 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 16 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 17 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 18 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.50 10.85 6.88 -11.03 -0.08 10.77 16 22 O -0.52 -13.30 16.61 5.55 0.09 -13.20 16 23 H 0.06 0.88 8.06 -51.93 -0.42 0.46 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.40 4.54 8.96 -40.82 -0.37 4.17 16 27 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 28 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.14 2.70 6.04 -52.49 -0.32 2.38 16 31 H 0.04 1.14 5.86 -51.93 -0.30 0.84 16 32 H 0.05 1.45 7.40 -51.93 -0.38 1.07 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 281.84 15.07 4.25 4.25 Total: -1.00 -32.68 281.84 -7.47 -40.15 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -3.87 Total: 2.71 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -3.05 Total: -1.91 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.14 Total: -49.14 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.20 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.68 -7.47 -40.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076888176.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.755 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds