Wall clock time and date at job start Mon Mar 30 2020 04:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.61688 * 2 1 4 4 N 1.47051 * 109.54410 * 239.77802 * 2 1 3 5 5 C 1.40194 * 117.88963 * 282.15581 * 4 2 1 6 6 C 1.38334 * 121.09155 * 150.44044 * 5 4 2 7 7 C 1.38373 * 119.72988 * 180.30265 * 6 5 4 8 8 C 1.38290 * 120.18166 * 359.97438 * 7 6 5 9 9 C 1.38305 * 120.36223 * 359.94414 * 8 7 6 10 10 C 1.38537 * 119.85704 * 359.97438 * 9 8 7 11 11 N 1.40007 * 120.76918 * 180.19187 * 10 9 8 12 12 C 1.46499 * 119.64605 * 14.03030 * 11 10 9 13 13 C 1.50701 * 109.46992 * 89.99999 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46890 * 120.00210 * 17 15 13 20 20 H 1.48501 * 109.47062 * 240.00257 * 17 15 13 21 21 C 1.34651 * 120.70523 * 194.30639 * 11 10 9 22 22 O 1.21293 * 119.60479 * 182.09789 * 21 11 10 23 23 H 1.08999 * 109.46675 * 180.22485 * 1 2 3 24 24 H 1.09003 * 109.46604 * 300.22182 * 1 2 3 25 25 H 1.08996 * 109.46909 * 60.21957 * 1 2 3 26 26 H 0.97001 * 121.05687 * 102.16951 * 4 2 1 27 27 H 1.07992 * 120.13687 * 0.26801 * 6 5 4 28 28 H 1.07997 * 119.91048 * 180.02562 * 7 6 5 29 29 H 1.07998 * 119.81855 * 179.97438 * 8 7 6 30 30 H 1.08000 * 120.06572 * 180.02562 * 9 8 7 31 31 H 1.09002 * 109.47391 * 329.99989 * 12 11 10 32 32 H 1.09001 * 109.46813 * 210.00046 * 12 11 10 33 33 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8960 1.0268 0.0000 4 7 2.0220 -0.6975 -1.1974 5 6 1.9955 -2.0992 -1.1971 6 6 1.8439 -2.8111 -2.3735 7 6 1.8153 -4.1941 -2.3398 8 6 1.9382 -4.8629 -1.1357 9 6 2.0917 -4.1569 0.0436 10 6 2.1231 -2.7721 0.0194 11 7 2.2816 -2.0385 1.2012 12 6 2.7207 -2.7180 2.4226 13 6 4.2256 -2.6916 2.4987 14 1 4.7977 -2.2159 1.7159 15 6 4.8720 -3.2739 3.5684 16 7 4.1753 -3.8527 4.5219 17 14 6.7373 -3.2406 3.6631 18 1 7.2808 -2.5341 2.4753 19 1 7.1576 -2.5291 4.8970 20 1 7.2563 -4.6317 3.6926 21 6 2.0295 -0.7161 1.2286 22 8 2.2100 -0.0927 2.2534 23 1 -0.3633 -1.0277 0.0040 24 1 -0.3633 0.5173 0.8880 25 1 -0.3633 0.5104 -0.8919 26 1 2.3545 -0.2035 -1.9632 27 1 1.7478 -2.2896 -3.3143 28 1 1.6975 -4.7528 -3.2565 29 1 1.9146 -5.9425 -1.1161 30 1 2.1876 -4.6842 0.9813 31 1 2.3757 -3.7518 2.4073 32 1 2.3039 -2.2087 3.2915 33 1 4.6301 -4.2627 5.2742 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076888176.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:17 Heat of formation + Delta-G solvation = -19.889509 kcal Electronic energy + Delta-G solvation = -17943.692785 eV Core-core repulsion = 15161.317348 eV Total energy + Delta-G solvation = -2782.375437 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.03846 -39.54168 -37.08236 -36.56961 -34.72753 -32.34273 -30.82137 -29.89833 -28.70331 -26.02217 -24.31621 -23.85553 -22.68266 -19.77981 -19.16722 -18.82160 -18.43802 -17.21087 -16.53049 -16.19519 -15.96592 -15.84900 -15.15075 -14.93211 -14.62974 -14.44160 -13.87133 -13.71829 -13.35172 -13.27953 -13.08805 -12.75686 -12.66293 -12.50949 -12.30648 -11.98082 -11.91155 -11.31450 -10.92252 -10.71791 -10.57546 -9.15341 -8.38498 -8.10811 -6.46493 0.40835 0.62897 1.30811 1.32942 1.45059 1.63382 1.98977 2.33403 2.50923 2.97661 3.02726 3.33175 3.89112 4.08283 4.09191 4.28506 4.44780 4.58244 4.66184 4.74168 4.82764 4.84459 4.99041 5.01706 5.12814 5.27075 5.46127 5.53603 5.73648 5.76536 5.89819 5.91455 6.20012 6.56407 6.66477 6.87975 7.10467 7.25236 8.76467 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.008756 C = 0.007106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.040763 B = 3197.006530 C = 3939.482050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.154 3.846 3 H 0.135 0.865 4 N -0.742 5.742 5 C 0.148 3.852 6 C -0.138 4.138 7 C -0.105 4.105 8 C -0.132 4.132 9 C -0.139 4.139 10 C 0.083 3.917 11 N -0.538 5.538 12 C 0.252 3.748 13 C -0.541 4.541 14 H 0.043 0.957 15 C 0.012 3.988 16 N -0.923 5.923 17 Si 0.970 3.030 18 H -0.272 1.272 19 H -0.276 1.276 20 H -0.264 1.264 21 C 0.480 3.520 22 O -0.579 6.579 23 H 0.044 0.956 24 H 0.066 0.934 25 H 0.107 0.893 26 H 0.423 0.577 27 H 0.162 0.838 28 H 0.161 0.839 29 H 0.142 0.858 30 H 0.105 0.895 31 H 0.035 0.965 32 H 0.005 0.995 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.526 2.092 -17.382 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.045 3.955 3 H 0.152 0.848 4 N -0.382 5.382 5 C 0.047 3.953 6 C -0.160 4.160 7 C -0.124 4.124 8 C -0.152 4.152 9 C -0.160 4.160 10 C -0.015 4.015 11 N -0.259 5.259 12 C 0.132 3.868 13 C -0.580 4.580 14 H 0.061 0.939 15 C -0.187 4.187 16 N -0.562 5.562 17 Si 0.794 3.206 18 H -0.197 1.197 19 H -0.201 1.201 20 H -0.189 1.189 21 C 0.269 3.731 22 O -0.458 6.458 23 H 0.063 0.937 24 H 0.085 0.915 25 H 0.126 0.874 26 H 0.263 0.737 27 H 0.179 0.821 28 H 0.179 0.821 29 H 0.160 0.840 30 H 0.123 0.877 31 H 0.052 0.948 32 H 0.023 0.977 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.464 2.418 -16.441 17.831 hybrid contribution 1.144 0.020 0.966 1.498 sum -5.320 2.438 -15.475 16.545 Atomic orbital electron populations 1.22122 0.91741 1.02487 1.04411 1.21212 0.96800 0.96717 0.80784 0.84758 1.44325 1.73693 1.01688 1.18487 1.17691 1.01008 0.84601 0.92025 1.20870 1.04424 0.94392 0.96303 1.21291 0.99193 0.93660 0.98220 1.21089 1.02205 1.00650 0.91282 1.20880 1.03343 0.91699 1.00051 1.18157 1.05643 0.92311 0.85353 1.45831 1.60735 1.08549 1.10757 1.18999 0.94634 0.92059 0.81154 1.21472 0.91916 1.37206 1.07387 0.93855 1.25831 1.04111 0.94280 0.94519 1.70039 1.37690 1.37438 1.11053 0.85331 0.78617 0.78556 0.78096 1.19661 1.20111 1.18903 1.22111 0.77645 0.81894 0.91440 1.90666 1.53826 1.65819 1.35518 0.93680 0.91456 0.87403 0.73742 0.82088 0.82114 0.84012 0.87722 0.94752 0.97688 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.36 71.98 0.67 -2.99 16 2 C 0.15 4.66 3.80 44.15 0.17 4.83 16 3 H 0.13 3.43 8.14 -2.39 -0.02 3.41 16 4 N -0.74 -19.31 5.55 -320.78 -1.78 -21.09 16 5 C 0.15 4.54 6.25 38.16 0.24 4.78 16 6 C -0.14 -3.12 10.00 22.32 0.22 -2.90 16 7 C -0.10 -2.29 10.04 22.31 0.22 -2.07 16 8 C -0.13 -3.72 10.03 22.30 0.22 -3.49 16 9 C -0.14 -5.31 9.32 22.36 0.21 -5.10 16 10 C 0.08 3.33 6.43 38.24 0.25 3.58 16 11 N -0.54 -26.12 2.68 -634.99 -1.70 -27.82 16 12 C 0.25 14.57 4.84 85.63 0.41 14.99 16 13 C -0.54 -33.11 9.39 25.60 0.24 -32.87 16 14 H 0.04 2.70 7.81 -2.91 -0.02 2.68 16 15 C 0.01 0.73 5.46 84.66 0.46 1.19 16 16 N -0.92 -56.77 13.29 21.45 0.28 -56.48 16 17 Si 0.97 46.42 29.54 68.60 2.03 48.45 16 18 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 21 C 0.48 21.92 6.88 87.68 0.60 22.52 16 22 O -0.58 -31.57 16.61 -3.07 -0.05 -31.62 16 23 H 0.04 1.26 8.06 -2.39 -0.02 1.24 16 24 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.42 7.76 8.96 -92.71 -0.83 6.93 16 27 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 28 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 29 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 30 H 0.10 4.54 6.04 -2.91 -0.02 4.53 16 31 H 0.03 2.01 5.86 -2.39 -0.01 1.99 16 32 H 0.01 0.33 7.40 -2.39 -0.02 0.31 16 33 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -77.55 281.84 3.00 -74.54 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.30 Total: 11.56 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 3.93 Total: 2.46 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -3.20 Total: -105.40 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.05 Total: -31.62 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -77.55 3.00 -74.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076888176.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.655 kcal (2) G-P(sol) polarization free energy of solvation -77.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds