Wall clock time and date at job start Mon Mar 30 2020 03:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38332 * 119.81358 * 2 1 4 4 C 1.38419 * 119.84629 * 179.72279 * 3 2 1 5 5 C 1.37648 * 119.91390 * 0.25975 * 4 3 2 6 6 C 1.38979 * 120.80625 * 359.97438 * 5 4 3 7 7 C 1.37913 * 119.80612 * 180.25520 * 2 1 3 8 8 C 1.50703 * 119.94414 * 0.02663 * 7 2 1 9 9 N 1.39390 * 110.23158 * 180.02562 * 6 5 4 10 10 C 1.37142 * 123.86283 * 179.97438 * 9 6 5 11 11 H 1.08005 * 119.99635 * 323.00813 * 10 9 6 12 12 C 1.38883 * 120.00256 * 143.00478 * 10 9 6 13 13 N 1.31418 * 120.00269 * 343.05099 * 12 10 9 14 14 Si 1.86805 * 120.00152 * 163.05310 * 12 10 9 15 15 H 1.48503 * 109.46817 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47357 * 120.00065 * 14 12 10 17 17 H 1.48504 * 109.46938 * 240.00173 * 14 12 10 18 18 C 1.34362 * 112.27855 * 359.97438 * 9 6 5 19 19 O 1.21288 * 126.44083 * 179.97438 * 18 9 6 20 20 C 1.51136 * 132.86592 * 179.97438 * 5 4 3 21 21 H 1.08994 * 110.51300 * 298.63428 * 20 5 4 22 22 N 1.46901 * 110.51582 * 61.21984 * 20 5 4 23 23 H 1.08993 * 109.47174 * 89.99734 * 1 2 3 24 24 H 1.08994 * 109.46860 * 209.99781 * 1 2 3 25 25 H 1.09000 * 109.46687 * 329.99534 * 1 2 3 26 26 H 1.07999 * 120.07228 * 0.02562 * 3 2 1 27 27 H 1.07994 * 120.04045 * 180.22908 * 4 3 2 28 28 H 1.09001 * 109.46854 * 264.41310 * 8 7 2 29 29 H 1.09000 * 109.46842 * 24.40838 * 8 7 2 30 30 H 1.08994 * 109.47298 * 144.41380 * 8 7 2 31 31 H 0.97005 * 120.00698 * 179.97438 * 13 12 10 32 32 H 1.00902 * 110.99382 * 179.97438 * 22 20 5 33 33 H 1.00890 * 111.00035 * 303.95201 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.2002 0.0000 4 6 3.5790 1.2010 0.0058 5 6 4.2661 0.0083 0.0062 6 6 3.5871 -1.2043 0.0013 7 6 2.1925 -1.1967 -0.0053 8 6 1.4333 -2.4985 -0.0117 9 7 4.4928 -2.2639 0.0033 10 6 4.1236 -3.5847 0.0000 11 1 3.2566 -3.9044 0.5590 12 6 4.8646 -4.5111 -0.7222 13 7 5.6977 -4.1039 -1.6534 14 14 4.6771 -6.3360 -0.3699 15 1 3.6840 -6.5308 0.7169 16 1 4.2119 -7.0317 -1.5966 17 1 5.9866 -6.8961 0.0504 18 6 5.7688 -1.8433 0.0088 19 8 6.7585 -2.5444 0.0121 20 6 5.7392 -0.3296 0.0111 21 1 6.2242 0.0636 -0.8823 22 7 6.3845 0.1987 1.2205 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6529 2.1345 0.0004 27 1 4.1190 2.1362 0.0096 28 1 1.3363 -2.8675 1.0093 29 1 0.4421 -2.3389 -0.4361 30 1 1.9724 -3.2305 -0.6129 31 1 6.2156 -4.7509 -2.1576 32 1 7.3687 -0.0233 1.2314 33 1 6.2369 1.1932 1.3040 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104839932.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:07 Heat of formation + Delta-G solvation = 6.794526 kcal Electronic energy + Delta-G solvation = -18139.074571 eV Core-core repulsion = 15357.856241 eV Total energy + Delta-G solvation = -2781.218330 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.55215 -37.64595 -34.85363 -34.62818 -32.12861 -31.96312 -29.85711 -27.95516 -26.01409 -24.90467 -23.77949 -21.28133 -19.71665 -19.51337 -17.23203 -16.17898 -15.52459 -15.12641 -14.94030 -14.52253 -14.21803 -13.79672 -13.60054 -13.06512 -12.79899 -12.63321 -12.22459 -12.00400 -11.98074 -11.66315 -11.38694 -11.23274 -11.17080 -10.95269 -10.44539 -10.37222 -10.10389 -9.47370 -8.86593 -8.52940 -8.23733 -7.82664 -6.88236 -6.35660 -4.09800 1.93595 2.08037 3.17163 3.25509 3.28769 3.78404 4.06237 4.59986 4.63578 5.02203 5.09998 5.24182 5.37993 5.41187 5.54046 5.70769 5.87025 5.90344 5.92328 6.07630 6.15811 6.27496 6.41690 6.57478 6.64896 6.91812 7.06215 7.13086 7.31623 7.37592 7.40158 7.60541 7.76944 7.98757 8.59446 8.81842 9.22290 9.87923 10.69179 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.021755 B = 0.010446 C = 0.007422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.752421 B = 2679.759849 C = 3771.420693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.055 4.055 3 C -0.183 4.183 4 C -0.061 4.061 5 C -0.176 4.176 6 C 0.188 3.812 7 C -0.120 4.120 8 C -0.114 4.114 9 N -0.378 5.378 10 C -0.365 4.365 11 H 0.102 0.898 12 C 0.058 3.942 13 N -0.827 5.827 14 Si 0.922 3.078 15 H -0.266 1.266 16 H -0.280 1.280 17 H -0.278 1.278 18 C 0.512 3.488 19 O -0.487 6.487 20 C 0.100 3.900 21 H 0.067 0.933 22 N -0.820 5.820 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.271 0.729 32 H 0.346 0.654 33 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.472 8.187 1.846 10.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.056 4.056 3 C -0.203 4.203 4 C -0.080 4.080 5 C -0.180 4.180 6 C 0.085 3.915 7 C -0.123 4.123 8 C -0.170 4.170 9 N -0.083 5.083 10 C -0.491 4.491 11 H 0.119 0.881 12 C -0.153 4.153 13 N -0.459 5.459 14 Si 0.748 3.252 15 H -0.190 1.190 16 H -0.206 1.206 17 H -0.203 1.203 18 C 0.300 3.700 19 O -0.360 6.360 20 C -0.014 4.014 21 H 0.084 0.916 22 N -0.352 5.352 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.159 0.841 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.151 7.024 2.079 9.565 hybrid contribution 0.642 -0.179 -0.684 0.955 sum -5.509 6.845 1.395 8.897 Atomic orbital electron populations 1.20760 0.91946 1.02144 1.01749 1.19329 0.95083 0.92104 0.99075 1.20483 0.93340 0.96690 1.09812 1.19923 0.93655 0.95379 0.99008 1.19633 0.93863 0.93398 1.11084 1.18489 0.90914 0.88106 0.94023 1.18886 0.90423 0.95256 1.07780 1.20941 0.98596 0.95557 1.01938 1.41399 1.03723 1.04585 1.58570 1.19463 1.16987 0.80523 1.32115 0.88062 1.25359 0.95835 1.00656 0.93499 1.69900 1.22777 1.35815 1.17417 0.85975 0.78587 0.82236 0.78436 1.19000 1.20614 1.20307 1.19776 0.83509 0.87757 0.78989 1.90568 1.35024 1.62377 1.48002 1.20663 0.92073 0.96094 0.92539 0.91598 1.58425 1.18561 1.18942 1.39272 0.91675 0.91517 0.92145 0.86898 0.87218 0.92538 0.92999 0.89009 0.91889 0.84087 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 9.16 36.01 0.33 -1.09 16 2 C -0.05 -0.94 5.87 -104.71 -0.61 -1.55 16 3 C -0.18 -2.95 9.71 -39.48 -0.38 -3.33 16 4 C -0.06 -1.03 10.04 -39.73 -0.40 -1.43 16 5 C -0.18 -3.63 5.94 -104.35 -0.62 -4.25 16 6 C 0.19 4.37 6.61 -83.69 -0.55 3.81 16 7 C -0.12 -2.43 5.91 -104.28 -0.62 -3.04 16 8 C -0.11 -2.12 7.89 36.01 0.28 -1.84 16 9 N -0.38 -10.05 2.78 -58.79 -0.16 -10.21 16 10 C -0.36 -9.94 7.72 -14.94 -0.12 -10.05 16 11 H 0.10 2.60 6.01 -52.48 -0.32 2.28 16 12 C 0.06 1.60 4.83 -17.49 -0.08 1.51 16 13 N -0.83 -24.23 11.31 55.49 0.63 -23.60 16 14 Si 0.92 21.09 29.58 -169.99 -5.03 16.06 16 15 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C 0.51 13.70 7.11 -10.83 -0.08 13.63 16 19 O -0.49 -14.47 15.52 5.55 0.09 -14.39 16 20 C 0.10 2.13 4.11 -69.46 -0.29 1.85 16 21 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 22 N -0.82 -14.55 9.30 -6.17 -0.06 -14.61 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.07 0.83 6.57 -51.93 -0.34 0.49 16 25 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 26 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 27 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.06 1.01 8.03 -51.93 -0.42 0.60 16 29 H 0.05 0.80 6.37 -51.93 -0.33 0.47 16 30 H 0.09 1.94 5.78 -51.93 -0.30 1.64 16 31 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.35 5.76 9.08 -39.29 -0.36 5.40 16 33 H 0.34 4.86 9.01 -39.30 -0.35 4.51 16 LS Contribution 274.35 15.07 4.13 4.13 Total: -1.00 -32.28 274.35 -7.20 -39.48 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -3.66 Total: 8.92 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -3.13 Total: -5.79 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.41 Total: -48.42 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.09 Total: -14.39 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.28 -7.20 -39.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104839932.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.271 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds