Wall clock time and date at job start Mon Mar 30 2020 03:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38332 * 119.81358 * 2 1 4 4 C 1.38419 * 119.84629 * 179.72279 * 3 2 1 5 5 C 1.37648 * 119.91390 * 0.25975 * 4 3 2 6 6 C 1.38979 * 120.80625 * 359.97438 * 5 4 3 7 7 C 1.37913 * 119.80612 * 180.25520 * 2 1 3 8 8 C 1.50703 * 119.94414 * 0.02663 * 7 2 1 9 9 N 1.39390 * 110.23158 * 180.02562 * 6 5 4 10 10 C 1.37142 * 123.86283 * 179.97438 * 9 6 5 11 11 H 1.08005 * 119.99635 * 323.00813 * 10 9 6 12 12 C 1.38883 * 120.00256 * 143.00478 * 10 9 6 13 13 N 1.31418 * 120.00269 * 343.05099 * 12 10 9 14 14 Si 1.86805 * 120.00152 * 163.05310 * 12 10 9 15 15 H 1.48503 * 109.46817 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47357 * 120.00065 * 14 12 10 17 17 H 1.48504 * 109.46938 * 240.00173 * 14 12 10 18 18 C 1.34362 * 112.27855 * 359.97438 * 9 6 5 19 19 O 1.21288 * 126.44083 * 179.97438 * 18 9 6 20 20 C 1.51136 * 132.86592 * 179.97438 * 5 4 3 21 21 H 1.08994 * 110.51300 * 298.63428 * 20 5 4 22 22 N 1.46901 * 110.51582 * 61.21984 * 20 5 4 23 23 H 1.08993 * 109.47174 * 89.99734 * 1 2 3 24 24 H 1.08994 * 109.46860 * 209.99781 * 1 2 3 25 25 H 1.09000 * 109.46687 * 329.99534 * 1 2 3 26 26 H 1.07999 * 120.07228 * 0.02562 * 3 2 1 27 27 H 1.07994 * 120.04045 * 180.22908 * 4 3 2 28 28 H 1.09001 * 109.46854 * 264.41310 * 8 7 2 29 29 H 1.09000 * 109.46842 * 24.40838 * 8 7 2 30 30 H 1.08994 * 109.47298 * 144.41380 * 8 7 2 31 31 H 0.97005 * 120.00698 * 179.97438 * 13 12 10 32 32 H 1.00902 * 110.99382 * 179.97438 * 22 20 5 33 33 H 1.00890 * 111.00035 * 303.95201 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.2002 0.0000 4 6 3.5790 1.2010 0.0058 5 6 4.2661 0.0083 0.0062 6 6 3.5871 -1.2043 0.0013 7 6 2.1925 -1.1967 -0.0053 8 6 1.4333 -2.4985 -0.0117 9 7 4.4928 -2.2639 0.0033 10 6 4.1236 -3.5847 0.0000 11 1 3.2566 -3.9044 0.5590 12 6 4.8646 -4.5111 -0.7222 13 7 5.6977 -4.1039 -1.6534 14 14 4.6771 -6.3360 -0.3699 15 1 3.6840 -6.5308 0.7169 16 1 4.2119 -7.0317 -1.5966 17 1 5.9866 -6.8961 0.0504 18 6 5.7688 -1.8433 0.0088 19 8 6.7585 -2.5444 0.0121 20 6 5.7392 -0.3296 0.0111 21 1 6.2242 0.0636 -0.8823 22 7 6.3845 0.1987 1.2205 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6529 2.1345 0.0004 27 1 4.1190 2.1362 0.0096 28 1 1.3363 -2.8675 1.0093 29 1 0.4421 -2.3389 -0.4361 30 1 1.9724 -3.2305 -0.6129 31 1 6.2156 -4.7509 -2.1576 32 1 7.3687 -0.0233 1.2314 33 1 6.2369 1.1932 1.3040 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104839932.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:07 Heat of formation + Delta-G solvation = -16.306589 kcal Electronic energy + Delta-G solvation = -18140.076310 eV Core-core repulsion = 15357.856241 eV Total energy + Delta-G solvation = -2782.220070 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.22795 -39.28009 -36.67639 -36.29222 -34.02931 -33.38230 -31.33235 -29.57113 -27.52811 -26.54053 -25.44215 -22.84637 -21.53322 -21.02001 -19.05713 -17.85107 -17.24250 -16.75095 -16.61612 -16.27609 -15.69148 -15.40612 -14.94949 -14.72943 -14.51059 -14.25713 -13.70469 -13.50892 -13.40785 -13.22588 -12.98429 -12.97395 -12.67037 -12.48556 -12.15540 -12.08297 -11.52256 -11.27062 -10.72327 -10.33442 -9.82352 -9.25284 -8.68523 -8.33232 -6.17045 0.44579 0.58921 1.31875 1.37848 1.49329 2.04824 2.22125 2.83883 2.93179 3.23078 3.53168 3.63451 3.75717 4.15837 4.17735 4.26451 4.50211 4.53461 4.76551 4.88851 4.90427 4.98682 5.06233 5.15889 5.26148 5.34636 5.49151 5.62922 5.68335 5.86038 5.93949 5.96306 6.28606 6.53723 6.66287 6.88496 7.26784 7.95748 8.67193 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.021755 B = 0.010446 C = 0.007422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.752421 B = 2679.759849 C = 3771.420693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.056 4.056 3 C -0.161 4.161 4 C -0.059 4.059 5 C -0.181 4.181 6 C 0.134 3.866 7 C -0.136 4.136 8 C -0.108 4.108 9 N -0.400 5.400 10 C -0.375 4.375 11 H 0.106 0.894 12 C 0.002 3.998 13 N -0.872 5.872 14 Si 0.987 3.013 15 H -0.249 1.249 16 H -0.267 1.267 17 H -0.288 1.288 18 C 0.483 3.517 19 O -0.544 6.544 20 C 0.113 3.887 21 H 0.071 0.929 22 N -0.818 5.818 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.160 0.840 27 H 0.150 0.850 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.267 0.733 32 H 0.351 0.649 33 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.370 10.789 2.491 14.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.057 4.057 3 C -0.180 4.180 4 C -0.078 4.078 5 C -0.185 4.185 6 C 0.034 3.966 7 C -0.140 4.140 8 C -0.165 4.165 9 N -0.107 5.107 10 C -0.501 4.501 11 H 0.124 0.876 12 C -0.204 4.204 13 N -0.506 5.506 14 Si 0.809 3.191 15 H -0.172 1.172 16 H -0.192 1.192 17 H -0.214 1.214 18 C 0.272 3.728 19 O -0.422 6.422 20 C -0.001 4.001 21 H 0.088 0.912 22 N -0.353 5.353 23 H 0.098 0.902 24 H 0.088 0.912 25 H 0.107 0.893 26 H 0.177 0.823 27 H 0.167 0.833 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.165 0.835 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.136 9.703 2.741 13.606 hybrid contribution 1.337 -0.741 -0.846 1.747 sum -7.799 8.962 1.895 12.030 Atomic orbital electron populations 1.20854 0.88613 1.03825 1.03174 1.19876 0.97498 0.91146 0.97186 1.21121 0.93060 0.98141 1.05652 1.20416 0.94492 0.95420 0.97429 1.19877 0.93141 0.94036 1.11406 1.18987 0.92202 0.88087 0.97295 1.19321 0.89626 0.97220 1.07794 1.20858 0.99656 0.94374 1.01594 1.41574 1.04588 1.05117 1.59432 1.19791 1.16918 0.81832 1.31573 0.87631 1.26349 0.95614 1.05182 0.93251 1.70033 1.24534 1.36903 1.19099 0.84999 0.78216 0.76763 0.79084 1.17219 1.19247 1.21406 1.20682 0.83169 0.90191 0.78740 1.90491 1.36420 1.64199 1.51097 1.20366 0.93366 0.92511 0.93863 0.91182 1.58321 1.18863 1.20547 1.37561 0.90173 0.91209 0.89263 0.82281 0.83252 0.92430 0.89679 0.92379 0.92414 0.83514 0.82113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.24 9.16 71.24 0.65 -1.59 16 2 C -0.06 -1.68 5.87 -19.92 -0.12 -1.80 16 3 C -0.16 -4.26 9.71 22.34 0.22 -4.05 16 4 C -0.06 -1.76 10.04 22.17 0.22 -1.54 16 5 C -0.18 -7.25 5.94 -19.69 -0.12 -7.37 16 6 C 0.13 6.27 6.61 38.41 0.25 6.52 16 7 C -0.14 -5.35 5.91 -19.65 -0.12 -5.46 16 8 C -0.11 -3.97 7.89 71.24 0.56 -3.41 16 9 N -0.40 -22.22 2.78 -458.54 -1.28 -23.49 16 10 C -0.37 -21.40 7.72 84.02 0.65 -20.75 16 11 H 0.11 5.66 6.01 -2.91 -0.02 5.64 16 12 C 0.00 0.12 4.83 84.91 0.41 0.53 16 13 N -0.87 -54.17 11.31 21.65 0.24 -53.93 16 14 Si 0.99 45.12 29.58 68.60 2.03 47.15 16 15 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 16 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 17 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 18 C 0.48 27.17 7.11 87.94 0.63 27.80 16 19 O -0.54 -34.58 15.52 -3.05 -0.05 -34.63 16 20 C 0.11 4.86 4.11 43.78 0.18 5.04 16 21 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 22 N -0.82 -28.57 9.30 -173.43 -1.61 -30.19 16 23 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.07 1.43 6.57 -2.39 -0.02 1.41 16 25 H 0.09 1.38 8.08 -2.39 -0.02 1.36 16 26 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 27 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 28 H 0.06 2.04 8.03 -2.39 -0.02 2.02 16 29 H 0.08 2.45 6.37 -2.39 -0.02 2.43 16 30 H 0.06 2.52 5.78 -2.39 -0.01 2.51 16 31 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 32 H 0.35 11.77 9.08 -89.69 -0.81 10.95 16 33 H 0.36 9.55 9.01 -89.70 -0.81 8.74 16 Total: -1.00 -76.36 274.35 2.30 -74.06 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: -0.46 Total: 27.10 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 3.42 Total: -6.07 kcal Atomic # 7 Polarization: -104.97 SS G_CDS: -2.64 Total: -107.61 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -0.05 Total: -34.63 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -76.36 2.30 -74.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104839932.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.755 kcal (2) G-P(sol) polarization free energy of solvation -76.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds