Wall clock time and date at job start Mon Mar 30 2020 03:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38471 * 120.07883 * 2 1 4 4 C 1.37596 * 119.91749 * 179.97438 * 3 2 1 5 5 C 1.39029 * 120.80216 * 359.97438 * 4 3 2 6 6 C 1.39413 * 118.93447 * 359.95532 * 5 4 3 7 7 C 1.50700 * 119.93952 * 179.97438 * 6 5 4 8 8 C 1.37949 * 120.11755 * 0.10074 * 6 5 4 9 9 N 1.39394 * 110.22468 * 179.97438 * 5 4 3 10 10 C 1.37142 * 123.85773 * 180.02562 * 9 5 4 11 11 H 1.08004 * 119.99990 * 314.53493 * 10 9 5 12 12 C 1.38884 * 120.00095 * 134.54427 * 10 9 5 13 13 N 1.31422 * 120.00061 * 168.94248 * 12 10 9 14 14 Si 1.86802 * 119.99928 * 348.94658 * 12 10 9 15 15 H 1.48502 * 109.47297 * 94.82628 * 14 12 10 16 16 H 1.48500 * 109.47180 * 214.82662 * 14 12 10 17 17 H 1.48501 * 109.47242 * 334.82314 * 14 12 10 18 18 C 1.34362 * 112.27953 * 0.02562 * 9 5 4 19 19 O 1.21286 * 126.43560 * 179.97438 * 18 9 5 20 20 C 1.51135 * 132.88069 * 179.97438 * 4 3 2 21 21 H 1.09003 * 110.51800 * 61.37408 * 20 4 3 22 22 N 1.46906 * 110.62709 * 298.71568 * 20 4 3 23 23 H 1.08999 * 109.46758 * 90.00089 * 1 2 3 24 24 H 1.08998 * 109.47293 * 210.00317 * 1 2 3 25 25 H 1.09004 * 109.46974 * 329.99948 * 1 2 3 26 26 H 1.07999 * 120.03862 * 359.95478 * 3 2 1 27 27 H 1.09010 * 109.46989 * 83.31980 * 7 6 5 28 28 H 1.08997 * 109.47543 * 203.31724 * 7 6 5 29 29 H 1.08996 * 109.47212 * 323.32451 * 7 6 5 30 30 H 1.08003 * 119.80286 * 179.97438 * 8 6 5 31 31 H 0.97000 * 120.00018 * 179.97438 * 13 12 10 32 32 H 1.00898 * 110.99626 * 181.99447 * 22 20 4 33 33 H 1.00898 * 111.00255 * 305.94481 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.1982 0.0000 4 6 3.5770 1.1944 0.0005 5 6 4.2856 -0.0018 0.0016 6 6 3.5796 -1.2040 0.0031 7 6 4.3248 -2.5138 0.0037 8 6 2.2001 -1.1966 0.0014 9 7 5.6565 0.2502 0.0014 10 6 6.6139 -0.7317 0.0018 11 1 6.5212 -1.5760 0.6689 12 6 7.7027 -0.6404 -0.8556 13 7 8.7241 -1.4544 -0.7097 14 14 7.7154 0.6396 -2.2160 15 1 8.4292 1.8542 -1.7463 16 1 8.4083 0.0882 -3.4081 17 1 6.3188 0.9941 -2.5753 18 6 5.9327 1.5651 0.0008 19 8 7.0358 2.0695 0.0009 20 6 4.6085 2.2989 0.0002 21 1 4.5115 2.9126 0.8958 22 7 4.4794 3.1272 -1.2062 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6630 2.1346 -0.0007 27 1 4.6090 -2.7697 1.0245 28 1 3.6839 -3.2967 -0.4020 29 1 5.2204 -2.4226 -0.6108 30 1 1.6583 -2.1309 0.0021 31 1 9.4844 -1.3909 -1.3087 32 1 5.1864 3.8468 -1.2280 33 1 4.5151 2.5600 -2.0399 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104839947.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:57 Heat of formation + Delta-G solvation = 3.417966 kcal Electronic energy + Delta-G solvation = -18207.655633 eV Core-core repulsion = 15426.290884 eV Total energy + Delta-G solvation = -2781.364749 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.04015 -38.04947 -35.41078 -34.64048 -32.60899 -32.02452 -30.46685 -27.16614 -26.76285 -25.51047 -23.80421 -20.61862 -20.53319 -19.92321 -17.61812 -16.56140 -16.00958 -15.66696 -14.98536 -14.56476 -14.15257 -14.01543 -13.59664 -13.33635 -13.03853 -12.86773 -12.66996 -12.37026 -12.19970 -12.11933 -11.59467 -11.46404 -11.06216 -10.95224 -10.40380 -10.36633 -10.20238 -9.90886 -9.27804 -8.89662 -8.24777 -8.21869 -7.11336 -6.51192 -4.36122 1.66084 1.84085 3.03859 3.18192 3.35946 3.45742 4.10455 4.19085 4.31767 4.70598 4.81809 4.88246 5.15799 5.24762 5.37172 5.55317 5.71656 5.78165 5.80379 5.92065 6.00308 6.14413 6.30675 6.37256 6.45388 6.78334 6.84794 6.98023 7.12058 7.14956 7.33037 7.49651 7.54064 7.76456 8.26708 8.40314 9.00259 9.34664 10.52987 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025733 B = 0.010432 C = 0.008183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.846752 B = 2683.282367 C = 3421.026528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.140 4.140 3 C -0.053 4.053 4 C -0.159 4.159 5 C 0.161 3.839 6 C -0.100 4.100 7 C -0.113 4.113 8 C -0.086 4.086 9 N -0.393 5.393 10 C -0.358 4.358 11 H 0.113 0.887 12 C 0.084 3.916 13 N -0.856 5.856 14 Si 0.905 3.095 15 H -0.254 1.254 16 H -0.297 1.297 17 H -0.280 1.280 18 C 0.437 3.563 19 O -0.511 6.511 20 C 0.104 3.896 21 H 0.118 0.882 22 N -0.814 5.814 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.120 0.880 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.119 0.881 31 H 0.278 0.722 32 H 0.347 0.653 33 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.167 2.344 -0.413 13.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.142 4.142 3 C -0.072 4.072 4 C -0.163 4.163 5 C 0.061 3.939 6 C -0.103 4.103 7 C -0.170 4.170 8 C -0.105 4.105 9 N -0.101 5.101 10 C -0.484 4.484 11 H 0.131 0.869 12 C -0.126 4.126 13 N -0.490 5.490 14 Si 0.734 3.266 15 H -0.179 1.179 16 H -0.225 1.225 17 H -0.206 1.206 18 C 0.226 3.774 19 O -0.390 6.390 20 C -0.010 4.010 21 H 0.136 0.864 22 N -0.344 5.344 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.138 0.862 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.137 0.863 31 H 0.089 0.911 32 H 0.160 0.840 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.899 2.705 -0.165 13.181 hybrid contribution 1.194 0.077 -0.872 1.480 sum -11.705 2.782 -1.037 12.076 Atomic orbital electron populations 1.20590 0.91543 1.01933 1.01502 1.19560 0.95423 0.92741 1.06462 1.19914 0.91346 0.97332 0.98605 1.19654 0.93766 0.92975 1.09876 1.18621 0.85009 0.93938 0.96341 1.19199 0.92773 0.93686 1.04658 1.20914 1.01126 0.92292 1.02651 1.20578 0.92385 0.97304 1.00248 1.41753 1.03113 1.06334 1.58893 1.19109 1.00923 1.04374 1.23991 0.86918 1.25322 0.94444 0.96035 0.96837 1.69657 1.05711 1.36821 1.36781 0.86345 0.78622 0.82238 0.79357 1.17903 1.22500 1.20607 1.21707 0.91454 0.84006 0.80203 1.90604 1.25917 1.71772 1.50682 1.20785 0.90719 0.93274 0.96236 0.86420 1.59011 1.55528 1.16193 1.03634 0.92059 0.92204 0.92172 0.86243 0.92066 0.93173 0.88650 0.86272 0.91138 0.84017 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 10.02 36.01 0.36 -0.71 16 2 C -0.14 -2.06 5.89 -104.52 -0.62 -2.67 16 3 C -0.05 -0.84 9.70 -39.73 -0.39 -1.23 16 4 C -0.16 -2.99 5.93 -104.35 -0.62 -3.61 16 5 C 0.16 3.43 6.61 -83.69 -0.55 2.87 16 6 C -0.10 -1.89 5.91 -104.29 -0.62 -2.51 16 7 C -0.11 -2.08 8.63 36.01 0.31 -1.76 16 8 C -0.09 -1.35 9.30 -39.67 -0.37 -1.72 16 9 N -0.39 -9.67 2.38 -58.79 -0.14 -9.81 16 10 C -0.36 -9.78 7.79 -14.94 -0.12 -9.90 16 11 H 0.11 3.16 6.78 -52.48 -0.36 2.80 16 12 C 0.08 2.37 5.31 -17.49 -0.09 2.28 16 13 N -0.86 -24.86 13.96 55.49 0.77 -24.08 16 14 Si 0.90 23.32 24.56 -169.99 -4.18 19.14 16 15 H -0.25 -6.85 6.46 56.52 0.36 -6.49 16 16 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 17 H -0.28 -6.97 6.93 56.52 0.39 -6.58 16 18 C 0.44 10.48 5.84 -10.83 -0.06 10.42 16 19 O -0.51 -13.68 13.78 5.55 0.08 -13.60 16 20 C 0.10 1.99 4.12 -69.46 -0.29 1.70 16 21 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 22 N -0.81 -13.77 9.33 -6.17 -0.06 -13.83 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 25 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 26 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 27 H 0.06 1.10 8.05 -51.92 -0.42 0.69 16 28 H 0.05 0.76 8.03 -51.93 -0.42 0.34 16 29 H 0.09 2.05 5.94 -51.93 -0.31 1.74 16 30 H 0.12 1.55 8.05 -52.48 -0.42 1.13 16 31 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.35 5.49 9.07 -39.29 -0.36 5.13 16 33 H 0.34 6.09 8.97 -39.29 -0.35 5.74 16 LS Contribution 273.25 15.07 4.12 4.12 Total: -1.00 -30.48 273.25 -6.37 -36.84 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -3.92 Total: 8.05 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -3.04 Total: -6.83 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 0.58 Total: -47.73 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.08 Total: -13.60 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.18 Total: 19.14 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.48 -6.37 -36.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104839947.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.263 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds