Wall clock time and date at job start Mon Mar 30 2020 03:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38471 * 120.07883 * 2 1 4 4 C 1.37596 * 119.91749 * 179.97438 * 3 2 1 5 5 C 1.39029 * 120.80216 * 359.97438 * 4 3 2 6 6 C 1.39413 * 118.93447 * 359.95532 * 5 4 3 7 7 C 1.50700 * 119.93952 * 179.97438 * 6 5 4 8 8 C 1.37949 * 120.11755 * 0.10074 * 6 5 4 9 9 N 1.39394 * 110.22468 * 179.97438 * 5 4 3 10 10 C 1.37142 * 123.85773 * 180.02562 * 9 5 4 11 11 H 1.08004 * 119.99990 * 314.53493 * 10 9 5 12 12 C 1.38884 * 120.00095 * 134.54427 * 10 9 5 13 13 N 1.31422 * 120.00061 * 168.94248 * 12 10 9 14 14 Si 1.86802 * 119.99928 * 348.94658 * 12 10 9 15 15 H 1.48502 * 109.47297 * 94.82628 * 14 12 10 16 16 H 1.48500 * 109.47180 * 214.82662 * 14 12 10 17 17 H 1.48501 * 109.47242 * 334.82314 * 14 12 10 18 18 C 1.34362 * 112.27953 * 0.02562 * 9 5 4 19 19 O 1.21286 * 126.43560 * 179.97438 * 18 9 5 20 20 C 1.51135 * 132.88069 * 179.97438 * 4 3 2 21 21 H 1.09003 * 110.51800 * 61.37408 * 20 4 3 22 22 N 1.46906 * 110.62709 * 298.71568 * 20 4 3 23 23 H 1.08999 * 109.46758 * 90.00089 * 1 2 3 24 24 H 1.08998 * 109.47293 * 210.00317 * 1 2 3 25 25 H 1.09004 * 109.46974 * 329.99948 * 1 2 3 26 26 H 1.07999 * 120.03862 * 359.95478 * 3 2 1 27 27 H 1.09010 * 109.46989 * 83.31980 * 7 6 5 28 28 H 1.08997 * 109.47543 * 203.31724 * 7 6 5 29 29 H 1.08996 * 109.47212 * 323.32451 * 7 6 5 30 30 H 1.08003 * 119.80286 * 179.97438 * 8 6 5 31 31 H 0.97000 * 120.00018 * 179.97438 * 13 12 10 32 32 H 1.00898 * 110.99626 * 181.99447 * 22 20 4 33 33 H 1.00898 * 111.00255 * 305.94481 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.1982 0.0000 4 6 3.5770 1.1944 0.0005 5 6 4.2856 -0.0018 0.0016 6 6 3.5796 -1.2040 0.0031 7 6 4.3248 -2.5138 0.0037 8 6 2.2001 -1.1966 0.0014 9 7 5.6565 0.2502 0.0014 10 6 6.6139 -0.7317 0.0018 11 1 6.5212 -1.5760 0.6689 12 6 7.7027 -0.6404 -0.8556 13 7 8.7241 -1.4544 -0.7097 14 14 7.7154 0.6396 -2.2160 15 1 8.4292 1.8542 -1.7463 16 1 8.4083 0.0882 -3.4081 17 1 6.3188 0.9941 -2.5753 18 6 5.9327 1.5651 0.0008 19 8 7.0358 2.0695 0.0009 20 6 4.6085 2.2989 0.0002 21 1 4.5115 2.9126 0.8958 22 7 4.4794 3.1272 -1.2062 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6630 2.1346 -0.0007 27 1 4.6090 -2.7697 1.0245 28 1 3.6839 -3.2967 -0.4020 29 1 5.2204 -2.4226 -0.6108 30 1 1.6583 -2.1309 0.0021 31 1 9.4844 -1.3909 -1.3087 32 1 5.1864 3.8468 -1.2280 33 1 4.5151 2.5600 -2.0399 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104839947.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:57 Heat of formation + Delta-G solvation = -18.451495 kcal Electronic energy + Delta-G solvation = -18208.603964 eV Core-core repulsion = 15426.290884 eV Total energy + Delta-G solvation = -2782.313080 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.65724 -39.59436 -37.10979 -36.23611 -34.43829 -33.51840 -31.87239 -28.77786 -28.04170 -26.96652 -25.52720 -22.25343 -21.95980 -21.49292 -19.44580 -18.19898 -17.60032 -17.37021 -16.57304 -16.30189 -15.63550 -15.57050 -15.23068 -14.80514 -14.70354 -14.34432 -14.14175 -13.88726 -13.59364 -13.48378 -13.25742 -12.69286 -12.64628 -12.46080 -12.24552 -12.13575 -11.70124 -11.53580 -11.08251 -10.84497 -9.85720 -9.58147 -8.75278 -8.59780 -6.47478 0.22596 0.48502 1.05669 1.12597 1.27348 1.64755 2.12540 2.42920 2.69897 2.96758 3.20908 3.41187 3.59701 4.01829 4.11316 4.35520 4.41620 4.52181 4.65980 4.82044 4.84536 4.88978 5.05321 5.13789 5.26826 5.33870 5.47643 5.51393 5.65021 5.70604 5.75110 5.79363 6.11628 6.16095 6.42509 6.45375 6.93918 7.44959 8.42666 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025733 B = 0.010432 C = 0.008183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.846752 B = 2683.282367 C = 3421.026528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.116 4.116 3 C -0.053 4.053 4 C -0.154 4.154 5 C 0.110 3.890 6 C -0.113 4.113 7 C -0.107 4.107 8 C -0.084 4.084 9 N -0.410 5.410 10 C -0.349 4.349 11 H 0.091 0.909 12 C 0.038 3.962 13 N -0.896 5.896 14 Si 0.954 3.046 15 H -0.276 1.276 16 H -0.289 1.289 17 H -0.269 1.269 18 C 0.420 3.580 19 O -0.556 6.556 20 C 0.117 3.883 21 H 0.139 0.861 22 N -0.796 5.796 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.150 0.850 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.153 0.847 31 H 0.280 0.720 32 H 0.354 0.646 33 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.548 3.074 -0.781 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.072 4.072 4 C -0.157 4.157 5 C 0.013 3.987 6 C -0.115 4.115 7 C -0.164 4.164 8 C -0.103 4.103 9 N -0.120 5.120 10 C -0.475 4.475 11 H 0.108 0.892 12 C -0.168 4.168 13 N -0.533 5.533 14 Si 0.783 3.217 15 H -0.202 1.202 16 H -0.216 1.216 17 H -0.194 1.194 18 C 0.211 3.789 19 O -0.438 6.438 20 C 0.002 3.998 21 H 0.156 0.844 22 N -0.326 5.326 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.167 0.833 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.171 0.829 31 H 0.090 0.910 32 H 0.168 0.832 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.358 3.422 -0.541 17.700 hybrid contribution 2.287 -0.197 -0.661 2.389 sum -15.071 3.225 -1.202 15.459 Atomic orbital electron populations 1.20713 0.87979 1.03800 1.03070 1.20131 0.97799 0.91653 1.02150 1.20304 0.89983 0.99308 0.97607 1.19809 0.94814 0.91462 1.09615 1.18933 0.83481 0.96117 1.00203 1.19503 0.94328 0.92856 1.04838 1.20792 1.00227 0.93726 1.01648 1.20965 0.90887 0.99490 0.98920 1.41838 1.04248 1.06042 1.59898 1.18977 1.01614 1.04199 1.22746 0.89187 1.25911 0.94612 0.97535 0.98715 1.69723 1.06559 1.38744 1.38232 0.85565 0.78790 0.79638 0.77755 1.20216 1.21640 1.19441 1.22633 0.92778 0.84244 0.79266 1.90555 1.27885 1.72462 1.52944 1.20737 0.87887 0.93342 0.97820 0.84407 1.59067 1.55303 1.15475 1.02725 0.90429 0.90417 0.90438 0.83279 0.92739 0.89770 0.92642 0.82924 0.90994 0.83222 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 10.02 71.24 0.71 -0.77 16 2 C -0.12 -2.78 5.89 -19.80 -0.12 -2.90 16 3 C -0.05 -1.45 9.70 22.17 0.22 -1.23 16 4 C -0.15 -5.40 5.93 -19.69 -0.12 -5.52 16 5 C 0.11 4.61 6.61 38.41 0.25 4.86 16 6 C -0.11 -4.09 5.91 -19.65 -0.12 -4.20 16 7 C -0.11 -3.93 8.63 71.24 0.61 -3.31 16 8 C -0.08 -2.29 9.30 22.21 0.21 -2.08 16 9 N -0.41 -20.68 2.38 -458.54 -1.09 -21.77 16 10 C -0.35 -19.96 7.79 84.02 0.65 -19.31 16 11 H 0.09 5.40 6.78 -2.91 -0.02 5.38 16 12 C 0.04 2.23 5.31 84.91 0.45 2.68 16 13 N -0.90 -54.67 13.96 21.65 0.30 -54.37 16 14 Si 0.95 49.97 24.56 68.60 1.68 51.66 16 15 H -0.28 -15.31 6.46 99.48 0.64 -14.67 16 16 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 17 H -0.27 -13.33 6.93 99.48 0.69 -12.64 16 18 C 0.42 20.42 5.84 87.94 0.51 20.94 16 19 O -0.56 -30.68 13.78 -3.05 -0.04 -30.72 16 20 C 0.12 4.27 4.12 43.78 0.18 4.45 16 21 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 22 N -0.80 -25.21 9.33 -173.42 -1.62 -26.83 16 23 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 25 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 26 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 27 H 0.05 2.01 8.05 -2.38 -0.02 1.99 16 28 H 0.08 2.41 8.03 -2.39 -0.02 2.39 16 29 H 0.05 2.48 5.94 -2.39 -0.01 2.46 16 30 H 0.15 3.12 8.05 -2.91 -0.02 3.09 16 31 H 0.28 16.02 8.31 -92.71 -0.77 15.25 16 32 H 0.35 10.59 9.07 -89.70 -0.81 9.78 16 33 H 0.34 11.39 8.97 -89.70 -0.80 10.59 16 Total: -1.00 -70.07 273.25 2.15 -67.92 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -0.55 Total: 20.49 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 3.45 Total: -6.38 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -2.40 Total: -102.96 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.04 Total: -30.72 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 1.68 Total: 51.66 kcal Total: -70.07 2.15 -67.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104839947.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.472 kcal (2) G-P(sol) polarization free energy of solvation -70.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds