Wall clock time and date at job start Mon Mar 30 2020 03:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47494 * 2 1 4 4 C 1.38328 * 120.07910 * 89.99630 * 3 2 1 5 5 C 1.37906 * 120.38700 * 180.02562 * 4 3 2 6 6 C 1.39450 * 120.12157 * 359.97438 * 5 4 3 7 7 C 1.38992 * 118.92566 * 0.15523 * 6 5 4 8 8 C 1.37643 * 120.80828 * 0.02562 * 7 6 5 9 9 C 1.51143 * 106.32183 * 180.23966 * 7 6 5 10 10 H 1.09000 * 110.63169 * 241.08039 * 9 7 6 11 11 N 1.46904 * 110.51086 * 118.42064 * 9 7 6 12 12 C 1.51397 * 104.04823 * 359.78232 * 9 7 6 13 13 O 1.21274 * 126.44421 * 179.97438 * 12 9 7 14 14 N 1.34373 * 107.11458 * 359.97438 * 12 9 7 15 15 C 1.37140 * 123.85645 * 179.97438 * 14 12 9 16 16 H 1.08001 * 120.00304 * 213.68844 * 15 14 12 17 17 C 1.38887 * 120.00379 * 33.68520 * 15 14 12 18 18 N 1.31432 * 119.99817 * 20.15832 * 17 15 14 19 19 Si 1.86802 * 120.00404 * 199.88097 * 17 15 14 20 20 H 1.48498 * 109.46950 * 90.00235 * 19 17 15 21 21 H 1.48499 * 109.46967 * 210.00185 * 19 17 15 22 22 H 1.48499 * 109.46875 * 329.99850 * 19 17 15 23 23 H 1.08997 * 109.47726 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47338 * 300.00791 * 1 2 3 25 25 H 1.09005 * 109.46747 * 60.00141 * 1 2 3 26 26 H 1.08996 * 109.47338 * 239.99209 * 2 1 3 27 27 H 1.09005 * 109.46747 * 119.99858 * 2 1 3 28 28 H 1.08006 * 119.81069 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.94368 * 179.97438 * 5 4 3 30 30 H 1.07999 * 120.03661 * 180.22789 * 8 7 6 31 31 H 1.00903 * 110.99850 * 183.92639 * 11 9 7 32 32 H 1.00902 * 110.99782 * 307.87397 * 11 9 7 33 33 H 0.96993 * 120.00158 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2634 2.0744 1.1970 5 6 2.7227 3.3748 1.2044 6 6 2.9582 4.0406 0.0020 7 6 2.7195 3.3736 -1.1938 8 6 2.2576 2.0770 -1.1977 9 6 3.0699 4.3437 -2.2986 10 1 2.1970 4.5532 -2.9169 11 7 4.1661 3.8138 -3.1205 12 6 3.5124 5.5919 -1.5650 13 8 3.8851 6.6300 -2.0692 14 7 3.4144 5.3334 -0.2500 15 6 3.7331 6.2362 0.7320 16 1 4.1574 5.8931 1.6639 17 6 3.5101 7.5918 0.5280 18 7 2.6585 7.9865 -0.3920 19 14 4.4147 8.8539 1.5664 20 1 5.6919 9.2176 0.9020 21 1 3.5717 10.0672 1.7165 22 1 4.6993 8.2801 2.9062 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 2.0831 1.5635 2.1313 29 1 2.9003 3.8784 2.1431 30 1 2.0798 1.5693 -2.1342 31 1 4.4491 4.4828 -3.8208 32 1 4.9487 3.5391 -2.5458 33 1 2.5030 8.9332 -0.5348 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104888476.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:48 Heat of formation + Delta-G solvation = 0.216808 kcal Electronic energy + Delta-G solvation = -17729.062603 eV Core-core repulsion = 14947.559041 eV Total energy + Delta-G solvation = -2781.503562 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.57070 -37.70747 -35.16226 -34.29553 -32.73779 -31.79100 -29.99173 -28.02300 -26.27178 -24.43222 -23.02267 -21.19582 -20.07041 -19.94383 -17.38227 -16.18854 -15.96498 -15.05942 -15.00756 -14.69227 -14.17543 -13.97845 -13.52723 -13.16134 -12.98212 -12.93351 -12.57043 -12.15704 -11.95167 -11.61338 -11.47106 -11.09991 -10.88637 -10.85137 -10.67775 -10.39841 -10.09432 -9.64452 -9.56253 -8.61458 -8.26195 -7.90699 -6.96657 -6.42896 -4.16537 1.90035 2.04833 3.14405 3.21312 3.22975 3.73387 4.02455 4.51411 4.66816 4.93615 5.05728 5.09032 5.20454 5.36299 5.44963 5.60278 5.63847 5.75367 5.94910 6.01815 6.05490 6.14265 6.30038 6.37958 6.50231 6.66701 6.98391 7.09544 7.19199 7.29993 7.37704 7.54725 7.72498 7.88483 8.51378 8.73635 9.16041 9.77873 10.61474 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.029192 B = 0.007426 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.932594 B = 3769.512358 C = 4428.134547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.069 4.069 3 C -0.156 4.156 4 C -0.075 4.075 5 C -0.157 4.157 6 C 0.172 3.828 7 C -0.170 4.170 8 C -0.040 4.040 9 C 0.103 3.897 10 H 0.109 0.891 11 N -0.814 5.814 12 C 0.458 3.542 13 O -0.489 6.489 14 N -0.379 5.379 15 C -0.371 4.371 16 H 0.095 0.905 17 C 0.060 3.940 18 N -0.819 5.819 19 Si 0.925 3.075 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.268 1.268 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.345 0.655 32 H 0.341 0.659 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.417 -11.548 0.697 11.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C -0.158 4.158 4 C -0.094 4.094 5 C -0.179 4.179 6 C 0.068 3.932 7 C -0.174 4.174 8 C -0.059 4.059 9 C -0.012 4.012 10 H 0.127 0.873 11 N -0.343 5.343 12 C 0.245 3.755 13 O -0.363 6.363 14 N -0.084 5.084 15 C -0.497 4.497 16 H 0.113 0.887 17 C -0.153 4.153 18 N -0.450 5.450 19 Si 0.751 3.249 20 H -0.200 1.200 21 H -0.207 1.207 22 H -0.193 1.193 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.132 0.868 29 H 0.137 0.863 30 H 0.133 0.867 31 H 0.158 0.842 32 H 0.153 0.847 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.774 -11.138 0.095 11.279 hybrid contribution 0.801 1.670 0.964 2.088 sum -0.973 -9.469 1.058 9.577 Atomic orbital electron populations 1.21774 0.95685 1.00732 1.02192 1.20297 0.95394 0.93124 1.01789 1.19417 1.07049 0.96464 0.92828 1.20564 0.98224 0.93630 0.97017 1.20229 1.06608 0.94843 0.96194 1.18741 0.92866 0.87254 0.94292 1.19650 1.08876 0.95641 0.93281 1.19894 0.96811 0.92086 0.97107 1.20778 0.96092 0.91069 0.93243 0.87316 1.59036 1.12650 1.45164 1.17458 1.21144 0.82091 0.89254 0.83037 1.90576 1.46343 1.27854 1.71478 1.41628 1.51313 1.08724 1.06781 1.19308 1.44872 0.86806 0.98700 0.88733 1.25313 0.94658 0.98411 0.96881 1.69931 1.27331 1.17117 1.30600 0.85987 0.79622 0.79656 0.79649 1.20008 1.20740 1.19300 0.93235 0.92749 0.92687 0.91809 0.91895 0.86760 0.86323 0.86653 0.84222 0.84736 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.89 37.15 0.37 -1.24 16 2 C -0.07 -0.82 6.07 -27.89 -0.17 -0.99 16 3 C -0.16 -2.40 5.14 -104.52 -0.54 -2.94 16 4 C -0.08 -1.23 9.68 -39.67 -0.38 -1.61 16 5 C -0.16 -3.08 9.80 -39.25 -0.38 -3.46 16 6 C 0.17 3.84 6.64 -83.69 -0.56 3.29 16 7 C -0.17 -3.41 5.90 -104.34 -0.62 -4.03 16 8 C -0.04 -0.68 9.70 -39.73 -0.39 -1.06 16 9 C 0.10 2.13 4.14 -69.46 -0.29 1.84 16 10 H 0.11 2.21 8.14 -51.93 -0.42 1.79 16 11 N -0.81 -14.16 9.33 -6.16 -0.06 -14.22 16 12 C 0.46 11.84 7.12 -10.82 -0.08 11.76 16 13 O -0.49 -14.18 15.34 5.56 0.09 -14.09 16 14 N -0.38 -9.87 2.80 -58.79 -0.16 -10.03 16 15 C -0.37 -10.17 9.52 -14.94 -0.14 -10.31 16 16 H 0.09 2.46 7.91 -52.49 -0.41 2.04 16 17 C 0.06 1.65 4.76 -17.48 -0.08 1.57 16 18 N -0.82 -24.05 11.23 55.49 0.62 -23.42 16 19 Si 0.93 21.12 29.60 -169.99 -5.03 16.09 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 27 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 28 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 29 H 0.12 2.28 8.04 -52.49 -0.42 1.86 16 30 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.34 5.71 9.06 -39.29 -0.36 5.35 16 32 H 0.34 5.82 8.95 -39.29 -0.35 5.46 16 33 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 LS Contribution 285.09 15.07 4.30 4.30 Total: -1.00 -31.13 285.09 -7.56 -38.68 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -4.06 Total: 9.88 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -3.25 Total: -7.18 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.40 Total: -47.67 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.09 Total: -14.09 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.13 -7.56 -38.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104888476.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.901 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds