Wall clock time and date at job start Mon Mar 30 2020 03:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47494 * 2 1 4 4 C 1.38328 * 120.07910 * 89.99630 * 3 2 1 5 5 C 1.37906 * 120.38700 * 180.02562 * 4 3 2 6 6 C 1.39450 * 120.12157 * 359.97438 * 5 4 3 7 7 C 1.38992 * 118.92566 * 0.15523 * 6 5 4 8 8 C 1.37643 * 120.80828 * 0.02562 * 7 6 5 9 9 C 1.51143 * 106.32183 * 180.23966 * 7 6 5 10 10 H 1.09000 * 110.63169 * 241.08039 * 9 7 6 11 11 N 1.46904 * 110.51086 * 118.42064 * 9 7 6 12 12 C 1.51397 * 104.04823 * 359.78232 * 9 7 6 13 13 O 1.21274 * 126.44421 * 179.97438 * 12 9 7 14 14 N 1.34373 * 107.11458 * 359.97438 * 12 9 7 15 15 C 1.37140 * 123.85645 * 179.97438 * 14 12 9 16 16 H 1.08001 * 120.00304 * 213.68844 * 15 14 12 17 17 C 1.38887 * 120.00379 * 33.68520 * 15 14 12 18 18 N 1.31432 * 119.99817 * 20.15832 * 17 15 14 19 19 Si 1.86802 * 120.00404 * 199.88097 * 17 15 14 20 20 H 1.48498 * 109.46950 * 90.00235 * 19 17 15 21 21 H 1.48499 * 109.46967 * 210.00185 * 19 17 15 22 22 H 1.48499 * 109.46875 * 329.99850 * 19 17 15 23 23 H 1.08997 * 109.47726 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47338 * 300.00791 * 1 2 3 25 25 H 1.09005 * 109.46747 * 60.00141 * 1 2 3 26 26 H 1.08996 * 109.47338 * 239.99209 * 2 1 3 27 27 H 1.09005 * 109.46747 * 119.99858 * 2 1 3 28 28 H 1.08006 * 119.81069 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.94368 * 179.97438 * 5 4 3 30 30 H 1.07999 * 120.03661 * 180.22789 * 8 7 6 31 31 H 1.00903 * 110.99850 * 183.92639 * 11 9 7 32 32 H 1.00902 * 110.99782 * 307.87397 * 11 9 7 33 33 H 0.96993 * 120.00158 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2634 2.0744 1.1970 5 6 2.7227 3.3748 1.2044 6 6 2.9582 4.0406 0.0020 7 6 2.7195 3.3736 -1.1938 8 6 2.2576 2.0770 -1.1977 9 6 3.0699 4.3437 -2.2986 10 1 2.1970 4.5532 -2.9169 11 7 4.1661 3.8138 -3.1205 12 6 3.5124 5.5919 -1.5650 13 8 3.8851 6.6300 -2.0692 14 7 3.4144 5.3334 -0.2500 15 6 3.7331 6.2362 0.7320 16 1 4.1574 5.8931 1.6639 17 6 3.5101 7.5918 0.5280 18 7 2.6585 7.9865 -0.3920 19 14 4.4147 8.8539 1.5664 20 1 5.6919 9.2176 0.9020 21 1 3.5717 10.0672 1.7165 22 1 4.6993 8.2801 2.9062 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 2.0831 1.5635 2.1313 29 1 2.9003 3.8784 2.1431 30 1 2.0798 1.5693 -2.1342 31 1 4.4491 4.4828 -3.8208 32 1 4.9487 3.5391 -2.5458 33 1 2.5030 8.9332 -0.5348 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104888476.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:48 Heat of formation + Delta-G solvation = -20.880346 kcal Electronic energy + Delta-G solvation = -17729.977444 eV Core-core repulsion = 14947.559041 eV Total energy + Delta-G solvation = -2782.418403 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.25572 -39.28835 -36.90041 -35.99403 -34.24334 -33.43635 -31.46116 -29.51737 -27.92657 -26.18494 -24.25614 -22.69144 -21.91837 -21.33091 -19.18021 -18.02601 -17.51216 -16.73256 -16.67062 -16.25189 -15.76142 -15.38589 -15.20239 -14.65806 -14.37490 -14.22479 -14.06359 -13.64338 -13.49151 -13.28656 -12.99641 -12.91812 -12.60640 -12.18025 -11.92969 -11.77760 -11.49414 -11.38364 -11.28420 -10.48012 -9.71236 -9.61242 -8.74269 -8.40038 -6.25166 0.38691 0.57504 1.29836 1.36145 1.45625 1.97252 2.19310 2.79065 2.90647 3.21757 3.39884 3.52421 3.77000 4.09256 4.18230 4.39477 4.47888 4.55805 4.70503 4.75646 4.79564 5.05705 5.16347 5.22761 5.23402 5.31366 5.53589 5.55524 5.61237 5.80306 5.84976 5.86863 6.20157 6.30159 6.58440 6.81562 7.20806 7.87169 8.58731 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.029192 B = 0.007426 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.932594 B = 3769.512358 C = 4428.134547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 C -0.129 4.129 4 C -0.071 4.071 5 C -0.163 4.163 6 C 0.123 3.877 7 C -0.168 4.168 8 C -0.042 4.042 9 C 0.116 3.884 10 H 0.110 0.890 11 N -0.793 5.793 12 C 0.435 3.565 13 O -0.543 6.543 14 N -0.401 5.401 15 C -0.389 4.389 16 H 0.098 0.902 17 C 0.006 3.994 18 N -0.863 5.863 19 Si 0.993 3.007 20 H -0.281 1.281 21 H -0.276 1.276 22 H -0.248 1.248 23 H 0.073 0.927 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.152 0.848 29 H 0.113 0.887 30 H 0.141 0.859 31 H 0.350 0.650 32 H 0.344 0.656 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.891 -14.850 1.658 15.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 C -0.130 4.130 4 C -0.090 4.090 5 C -0.184 4.184 6 C 0.024 3.976 7 C -0.172 4.172 8 C -0.061 4.061 9 C 0.001 3.999 10 H 0.128 0.872 11 N -0.323 5.323 12 C 0.223 3.777 13 O -0.421 6.421 14 N -0.108 5.108 15 C -0.515 4.515 16 H 0.115 0.885 17 C -0.202 4.202 18 N -0.496 5.496 19 Si 0.815 3.185 20 H -0.207 1.207 21 H -0.201 1.201 22 H -0.171 1.171 23 H 0.091 0.909 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.169 0.831 29 H 0.131 0.869 30 H 0.159 0.841 31 H 0.164 0.836 32 H 0.156 0.844 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.266 -14.536 1.092 14.752 hybrid contribution 0.869 2.375 0.713 2.628 sum -1.397 -12.161 1.805 12.373 Atomic orbital electron populations 1.21766 0.94757 1.02212 1.01629 1.20426 0.95983 0.90351 1.03776 1.19984 1.03233 0.98049 0.91741 1.20973 0.96655 0.92188 0.99162 1.20482 1.06565 0.96213 0.95153 1.19125 0.95888 0.86226 0.96366 1.19788 1.08988 0.96548 0.91855 1.20247 0.95969 0.90816 0.99069 1.20592 0.96840 0.89229 0.93257 0.87231 1.59070 1.12189 1.44354 1.16647 1.22010 0.81917 0.90144 0.83617 1.90506 1.49184 1.30069 1.72390 1.41776 1.52436 1.09935 1.06666 1.19648 1.44830 0.87741 0.99313 0.88465 1.26339 0.95208 1.00461 0.98164 1.70055 1.29462 1.17012 1.33075 0.84970 0.77752 0.77099 0.78694 1.20686 1.20078 1.17091 0.90852 0.93194 0.93469 0.90148 0.89764 0.83058 0.86863 0.84095 0.83633 0.84367 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.89 71.98 0.71 -1.79 16 2 C -0.07 -1.24 6.07 29.85 0.18 -1.06 16 3 C -0.13 -3.42 5.14 -19.80 -0.10 -3.53 16 4 C -0.07 -2.07 9.68 22.21 0.21 -1.85 16 5 C -0.16 -6.23 9.80 22.48 0.22 -6.01 16 6 C 0.12 5.58 6.64 38.41 0.26 5.83 16 7 C -0.17 -6.59 5.90 -19.68 -0.12 -6.71 16 8 C -0.04 -1.30 9.70 22.17 0.22 -1.09 16 9 C 0.12 4.85 4.14 43.78 0.18 5.03 16 10 H 0.11 4.54 8.14 -2.39 -0.02 4.52 16 11 N -0.79 -27.28 9.33 -173.41 -1.62 -28.89 16 12 C 0.43 23.54 7.12 87.94 0.63 24.16 16 13 O -0.54 -33.43 15.34 -3.01 -0.05 -33.47 16 14 N -0.40 -21.69 2.80 -458.54 -1.28 -22.97 16 15 C -0.39 -22.18 9.52 84.02 0.80 -21.38 16 16 H 0.10 5.23 7.91 -2.91 -0.02 5.21 16 17 C 0.01 0.32 4.76 84.91 0.40 0.73 16 18 N -0.86 -53.31 11.23 21.65 0.24 -53.07 16 19 Si 0.99 44.75 29.60 68.60 2.03 46.78 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 23 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.08 1.29 8.09 -2.39 -0.02 1.27 16 27 H 0.08 1.27 8.09 -2.38 -0.02 1.25 16 28 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.11 4.36 8.04 -2.91 -0.02 4.34 16 30 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 31 H 0.35 11.64 9.06 -89.69 -0.81 10.83 16 32 H 0.34 11.60 8.95 -89.69 -0.80 10.80 16 33 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -71.74 285.09 2.44 -69.30 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: -0.47 Total: 29.99 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 3.59 Total: -7.66 kcal Atomic # 7 Polarization: -102.27 SS G_CDS: -2.66 Total: -104.93 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.05 Total: -33.47 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -71.74 2.44 -69.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104888476.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.419 kcal (2) G-P(sol) polarization free energy of solvation -71.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds