Wall clock time and date at job start Mon Mar 30 2020 03:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37981 * 119.93599 * 2 1 4 4 C 1.38263 * 120.37181 * 179.97438 * 3 2 1 5 5 C 1.38429 * 119.83082 * 0.02562 * 4 3 2 6 6 C 1.37640 * 119.91444 * 0.02562 * 5 4 3 7 7 C 1.38948 * 120.80349 * 359.97438 * 6 5 4 8 8 N 1.39534 * 110.21840 * 180.02562 * 7 6 5 9 9 C 1.34364 * 112.25005 * 0.24788 * 8 7 6 10 10 O 1.21283 * 126.43999 * 179.75537 * 9 8 7 11 11 C 1.51130 * 132.85773 * 180.02562 * 6 5 4 12 12 H 1.09000 * 110.50955 * 298.75568 * 11 6 5 13 13 N 1.46903 * 110.51470 * 61.33056 * 11 6 5 14 14 C 1.46898 * 111.00067 * 205.00276 * 13 11 6 15 15 C 1.50700 * 109.46852 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00011 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99806 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99802 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99820 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47013 * 90.00373 * 19 17 15 21 21 H 1.48497 * 109.46833 * 210.00350 * 19 17 15 22 22 H 1.48500 * 109.46901 * 330.00066 * 19 17 15 23 23 H 1.09004 * 109.47446 * 269.97823 * 1 2 3 24 24 H 1.09003 * 109.47275 * 29.97557 * 1 2 3 25 25 H 1.08997 * 109.47590 * 149.97720 * 1 2 3 26 26 H 1.07993 * 119.81450 * 0.02562 * 3 2 1 27 27 H 1.08004 * 120.08386 * 180.02562 * 4 3 2 28 28 H 1.08000 * 120.04673 * 179.97438 * 5 4 3 29 29 H 0.97001 * 123.87099 * 179.97438 * 8 7 6 30 30 H 1.00898 * 110.99629 * 328.95604 * 13 11 6 31 31 H 1.09001 * 109.46775 * 299.99387 * 14 13 11 32 32 H 1.08998 * 109.47107 * 59.99630 * 14 13 11 33 33 H 0.97006 * 119.99372 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1957 0.0000 4 6 3.5781 1.2062 0.0005 5 6 4.2758 0.0106 0.0005 6 6 3.5914 -1.1835 -0.0005 7 6 2.2021 -1.2074 -0.0011 8 7 1.7425 -2.5249 -0.0016 9 6 2.7490 -3.4149 0.0040 10 8 2.6424 -4.6230 0.0092 11 6 4.0414 -2.6263 -0.0003 12 1 4.6250 -2.8444 -0.8947 13 7 4.8235 -2.9215 1.2077 14 6 5.7371 -4.0492 0.9809 15 6 6.5209 -4.3214 2.2389 16 1 6.3564 -3.7175 3.1190 17 6 7.4473 -5.3423 2.2665 18 7 7.6471 -6.0781 1.1950 19 14 8.4183 -5.6803 3.8261 20 1 7.6822 -6.6599 4.6651 21 1 9.7491 -6.2348 3.4702 22 1 8.5956 -4.4149 4.5828 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5142 26 1 1.6515 2.1286 0.0004 27 1 4.1124 2.1449 0.0009 28 1 5.3558 0.0148 0.0005 29 1 0.8039 -2.7700 -0.0016 30 1 5.3272 -2.1052 1.5207 31 1 5.1613 -4.9348 0.7122 32 1 6.4241 -3.8030 0.1712 33 1 8.2986 -6.7965 1.2146 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104979918.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:48 Heat of formation + Delta-G solvation = -1.716673 kcal Electronic energy + Delta-G solvation = -17197.629629 eV Core-core repulsion = 14416.042226 eV Total energy + Delta-G solvation = -2781.587404 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.31941 -38.29160 -35.58596 -35.12376 -33.09520 -32.03540 -29.62002 -27.57476 -26.86087 -25.29741 -22.14476 -21.84759 -20.97124 -20.14253 -17.71882 -16.63825 -16.34903 -15.72602 -15.59887 -14.65752 -14.59196 -14.05163 -13.85503 -13.71106 -13.50863 -13.07425 -12.62138 -12.53705 -12.22788 -12.10007 -11.63604 -11.28258 -11.01725 -10.70565 -10.69058 -10.59422 -10.00232 -9.83818 -9.15050 -8.78053 -8.46595 -7.90888 -7.46109 -6.00927 -4.03409 1.24338 1.30058 2.80167 3.18553 3.34670 3.40176 3.43481 3.79325 4.38073 4.45134 4.64574 4.74754 4.85564 5.14543 5.21438 5.33229 5.36396 5.43024 5.45049 5.57620 5.67116 5.86217 5.99360 6.19183 6.40448 6.50186 6.70884 6.96310 7.09558 7.17716 7.36621 7.73543 8.09062 8.26793 8.34141 8.49197 9.04015 9.60727 11.10237 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.033361 B = 0.005464 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.109438 B = 5123.454399 C = 5615.266957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.116 4.116 3 C -0.089 4.089 4 C -0.142 4.142 5 C -0.065 4.065 6 C -0.134 4.134 7 C 0.159 3.841 8 N -0.665 5.665 9 C 0.544 3.456 10 O -0.484 6.484 11 C 0.092 3.908 12 H 0.091 0.909 13 N -0.660 5.660 14 C 0.189 3.811 15 C -0.516 4.516 16 H 0.063 0.937 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.901 3.099 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.126 0.874 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.406 0.594 30 H 0.341 0.659 31 H 0.041 0.959 32 H -0.009 1.009 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.701 15.899 -4.398 20.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.119 4.119 3 C -0.108 4.108 4 C -0.161 4.161 5 C -0.084 4.084 6 C -0.137 4.137 7 C 0.061 3.939 8 N -0.309 5.309 9 C 0.330 3.670 10 O -0.354 6.354 11 C -0.021 4.021 12 H 0.109 0.891 13 N -0.294 5.294 14 C 0.063 3.937 15 C -0.554 4.554 16 H 0.081 0.919 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.728 3.272 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.144 0.856 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.244 0.756 30 H 0.160 0.840 31 H 0.059 0.941 32 H 0.009 0.991 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.004 14.539 -4.186 19.313 hybrid contribution 0.750 -0.009 0.253 0.792 sum -11.254 14.530 -3.933 18.795 Atomic orbital electron populations 1.20687 0.91154 1.02559 1.02301 1.19139 0.95754 0.90369 1.06643 1.20706 0.94221 0.96372 0.99452 1.20974 0.93992 0.97605 1.03537 1.20311 1.00161 0.90291 0.97672 1.20046 0.92962 0.95020 1.05672 1.17946 0.93059 0.84493 0.98428 1.43772 1.10160 1.04902 1.72043 1.20750 0.86351 0.86404 0.73477 1.90791 1.85655 1.12122 1.46865 1.20876 0.94808 0.88941 0.97453 0.89125 1.60673 1.31441 1.11071 1.26209 1.19805 0.89128 0.88285 0.96502 1.21104 1.20099 1.16303 0.97936 0.91900 1.24976 0.97080 0.95850 0.96534 1.69973 1.34977 1.20254 1.28195 0.86459 0.79070 0.78523 0.83101 1.20595 1.21274 1.19830 0.91236 0.91261 0.92197 0.85603 0.85522 0.85385 0.75616 0.83971 0.94065 0.99126 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.96 36.00 0.36 -0.54 16 2 C -0.12 -1.29 5.90 -104.31 -0.62 -1.90 16 3 C -0.09 -0.88 9.66 -39.67 -0.38 -1.26 16 4 C -0.14 -1.47 10.07 -39.50 -0.40 -1.87 16 5 C -0.07 -0.83 9.91 -39.73 -0.39 -1.22 16 6 C -0.13 -2.03 5.71 -104.37 -0.60 -2.62 16 7 C 0.16 2.22 6.81 -83.69 -0.57 1.65 16 8 N -0.66 -9.89 5.80 -9.70 -0.06 -9.94 16 9 C 0.54 10.60 8.33 -10.83 -0.09 10.51 16 10 O -0.48 -11.34 17.66 5.55 0.10 -11.24 16 11 C 0.09 1.74 3.33 -69.46 -0.23 1.51 16 12 H 0.09 1.72 7.82 -51.93 -0.41 1.32 16 13 N -0.66 -14.58 6.32 -109.86 -0.69 -15.28 16 14 C 0.19 5.10 5.29 -4.98 -0.03 5.07 16 15 C -0.52 -14.91 9.32 -34.44 -0.32 -15.23 16 16 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.34 13.29 55.43 0.74 -26.60 16 19 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 25 H 0.06 0.46 7.58 -51.93 -0.39 0.07 16 26 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 27 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 28 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.41 4.91 8.48 -40.82 -0.35 4.56 16 30 H 0.34 6.94 8.29 -39.29 -0.33 6.61 16 31 H 0.04 1.25 7.78 -51.93 -0.40 0.85 16 32 H -0.01 -0.25 8.08 -51.93 -0.42 -0.67 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 288.24 15.07 4.34 4.34 Total: -1.00 -33.63 288.24 -7.91 -41.54 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -3.95 Total: 4.50 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -3.36 Total: -4.34 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.01 Total: -51.82 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.10 Total: -11.24 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.63 -7.91 -41.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104979918.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.822 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds