Wall clock time and date at job start Mon Mar 30 2020 03:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37981 * 119.93599 * 2 1 4 4 C 1.38263 * 120.37181 * 179.97438 * 3 2 1 5 5 C 1.38429 * 119.83082 * 0.02562 * 4 3 2 6 6 C 1.37640 * 119.91444 * 0.02562 * 5 4 3 7 7 C 1.38948 * 120.80349 * 359.97438 * 6 5 4 8 8 N 1.39534 * 110.21840 * 180.02562 * 7 6 5 9 9 C 1.34364 * 112.25005 * 0.24788 * 8 7 6 10 10 O 1.21283 * 126.43999 * 179.75537 * 9 8 7 11 11 C 1.51130 * 132.85773 * 180.02562 * 6 5 4 12 12 H 1.09000 * 110.50955 * 298.75568 * 11 6 5 13 13 N 1.46903 * 110.51470 * 61.33056 * 11 6 5 14 14 C 1.46898 * 111.00067 * 205.00276 * 13 11 6 15 15 C 1.50700 * 109.46852 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00011 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99806 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99802 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99820 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47013 * 90.00373 * 19 17 15 21 21 H 1.48497 * 109.46833 * 210.00350 * 19 17 15 22 22 H 1.48500 * 109.46901 * 330.00066 * 19 17 15 23 23 H 1.09004 * 109.47446 * 269.97823 * 1 2 3 24 24 H 1.09003 * 109.47275 * 29.97557 * 1 2 3 25 25 H 1.08997 * 109.47590 * 149.97720 * 1 2 3 26 26 H 1.07993 * 119.81450 * 0.02562 * 3 2 1 27 27 H 1.08004 * 120.08386 * 180.02562 * 4 3 2 28 28 H 1.08000 * 120.04673 * 179.97438 * 5 4 3 29 29 H 0.97001 * 123.87099 * 179.97438 * 8 7 6 30 30 H 1.00898 * 110.99629 * 328.95604 * 13 11 6 31 31 H 1.09001 * 109.46775 * 299.99387 * 14 13 11 32 32 H 1.08998 * 109.47107 * 59.99630 * 14 13 11 33 33 H 0.97006 * 119.99372 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1957 0.0000 4 6 3.5781 1.2062 0.0005 5 6 4.2758 0.0106 0.0005 6 6 3.5914 -1.1835 -0.0005 7 6 2.2021 -1.2074 -0.0011 8 7 1.7425 -2.5249 -0.0016 9 6 2.7490 -3.4149 0.0040 10 8 2.6424 -4.6230 0.0092 11 6 4.0414 -2.6263 -0.0003 12 1 4.6250 -2.8444 -0.8947 13 7 4.8235 -2.9215 1.2077 14 6 5.7371 -4.0492 0.9809 15 6 6.5209 -4.3214 2.2389 16 1 6.3564 -3.7175 3.1190 17 6 7.4473 -5.3423 2.2665 18 7 7.6471 -6.0781 1.1950 19 14 8.4183 -5.6803 3.8261 20 1 7.6822 -6.6599 4.6651 21 1 9.7491 -6.2348 3.4702 22 1 8.5956 -4.4149 4.5828 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5142 26 1 1.6515 2.1286 0.0004 27 1 4.1124 2.1449 0.0009 28 1 5.3558 0.0148 0.0005 29 1 0.8039 -2.7700 -0.0016 30 1 5.3272 -2.1052 1.5207 31 1 5.1613 -4.9348 0.7122 32 1 6.4241 -3.8030 0.1712 33 1 8.2986 -6.7965 1.2146 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104979918.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:48 Heat of formation + Delta-G solvation = -26.942624 kcal Electronic energy + Delta-G solvation = -17198.723509 eV Core-core repulsion = 14416.042226 eV Total energy + Delta-G solvation = -2782.681283 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.57386 -39.57269 -37.15834 -36.59807 -34.78597 -33.49939 -30.89308 -29.18937 -27.68605 -27.11598 -23.94669 -23.14809 -22.11244 -21.56018 -18.88939 -18.58289 -17.82968 -17.27927 -16.96360 -16.43940 -15.75265 -15.45624 -15.33385 -14.84085 -14.64350 -14.52629 -14.27425 -13.91777 -13.35476 -13.25918 -13.10591 -12.77110 -12.66173 -12.40456 -12.13187 -11.90327 -11.84960 -11.42884 -11.23947 -10.70670 -9.79725 -9.30257 -8.94378 -8.24690 -6.37356 0.16126 0.36689 1.38096 1.40567 1.43404 1.54370 1.95492 2.38784 2.81131 3.08528 3.13469 3.33992 3.58497 3.84400 4.05417 4.18032 4.28561 4.45053 4.62451 4.78194 4.85647 4.96797 4.98313 5.15491 5.21858 5.29103 5.48298 5.52699 5.58287 5.63928 5.79731 5.92268 6.08934 6.26168 6.52944 6.80437 6.92918 7.33134 8.87558 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.033361 B = 0.005464 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.109438 B = 5123.454399 C = 5615.266957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.106 4.106 3 C -0.081 4.081 4 C -0.127 4.127 5 C -0.077 4.077 6 C -0.154 4.154 7 C 0.133 3.867 8 N -0.645 5.645 9 C 0.536 3.464 10 O -0.540 6.540 11 C 0.087 3.913 12 H 0.077 0.923 13 N -0.660 5.660 14 C 0.208 3.792 15 C -0.538 4.538 16 H 0.068 0.932 17 C 0.000 4.000 18 N -0.934 5.934 19 Si 0.979 3.021 20 H -0.276 1.276 21 H -0.278 1.278 22 H -0.258 1.258 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.060 0.940 26 H 0.167 0.833 27 H 0.161 0.839 28 H 0.132 0.868 29 H 0.420 0.580 30 H 0.351 0.649 31 H -0.003 1.003 32 H -0.030 1.030 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.566 19.329 -3.338 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.109 4.109 3 C -0.099 4.099 4 C -0.146 4.146 5 C -0.096 4.096 6 C -0.157 4.157 7 C 0.036 3.964 8 N -0.290 5.290 9 C 0.323 3.677 10 O -0.415 6.415 11 C -0.026 4.026 12 H 0.095 0.905 13 N -0.293 5.293 14 C 0.081 3.919 15 C -0.576 4.576 16 H 0.086 0.914 17 C -0.198 4.198 18 N -0.574 5.574 19 Si 0.803 3.197 20 H -0.202 1.202 21 H -0.204 1.204 22 H -0.181 1.181 23 H 0.096 0.904 24 H 0.113 0.887 25 H 0.079 0.921 26 H 0.185 0.815 27 H 0.179 0.821 28 H 0.150 0.850 29 H 0.260 0.740 30 H 0.171 0.829 31 H 0.015 0.985 32 H -0.012 1.012 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.907 18.058 -3.129 22.416 hybrid contribution 0.938 -0.888 -0.152 1.301 sum -11.970 17.169 -3.281 21.185 Atomic orbital electron populations 1.20796 0.88828 1.03980 1.03259 1.19581 0.97502 0.89378 1.04412 1.21243 0.94219 0.97330 0.97100 1.21406 0.94550 0.97729 1.00910 1.20536 1.00711 0.90320 0.98029 1.19861 0.93802 0.93354 1.08694 1.18200 0.92806 0.84617 1.00787 1.43419 1.09978 1.04962 1.70597 1.20812 0.87689 0.86037 0.73200 1.90746 1.86579 1.14288 1.49866 1.20840 0.94034 0.92273 0.95417 0.90533 1.60411 1.30249 1.10314 1.28376 1.19343 0.88619 0.88504 0.95456 1.21475 1.20697 1.16901 0.98515 0.91369 1.26026 0.98117 0.95302 1.00349 1.70121 1.35727 1.20825 1.30750 0.85244 0.77334 0.78865 0.78290 1.20215 1.20378 1.18140 0.90370 0.88675 0.92093 0.81543 0.82131 0.84978 0.74005 0.82873 0.98504 1.01187 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.96 71.23 0.71 -0.67 16 2 C -0.11 -1.98 5.90 -19.67 -0.12 -2.10 16 3 C -0.08 -1.18 9.66 22.21 0.21 -0.97 16 4 C -0.13 -2.10 10.07 22.32 0.22 -1.88 16 5 C -0.08 -1.82 9.91 22.17 0.22 -1.60 16 6 C -0.15 -4.66 5.71 -19.70 -0.11 -4.77 16 7 C 0.13 3.55 6.81 38.35 0.26 3.81 16 8 N -0.65 -19.46 5.80 -303.21 -1.76 -21.22 16 9 C 0.54 22.19 8.33 87.94 0.73 22.92 16 10 O -0.54 -27.30 17.66 -3.04 -0.05 -27.35 16 11 C 0.09 3.49 3.33 43.78 0.15 3.64 16 12 H 0.08 3.20 7.82 -2.39 -0.02 3.19 16 13 N -0.66 -30.65 6.32 -501.49 -3.17 -33.82 16 14 C 0.21 11.98 5.29 85.56 0.45 12.43 16 15 C -0.54 -32.05 9.32 25.60 0.24 -31.81 16 16 H 0.07 3.89 7.81 -2.91 -0.02 3.87 16 17 C 0.00 0.02 5.46 84.66 0.46 0.48 16 18 N -0.93 -58.97 13.29 21.45 0.28 -58.69 16 19 Si 0.98 45.59 29.54 68.60 2.03 47.62 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 23 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 24 H 0.09 0.73 8.08 -2.39 -0.02 0.71 16 25 H 0.06 0.76 7.58 -2.39 -0.02 0.74 16 26 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 27 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 28 H 0.13 2.93 8.06 -2.91 -0.02 2.90 16 29 H 0.42 10.13 8.48 -92.71 -0.79 9.34 16 30 H 0.35 14.76 8.29 -89.70 -0.74 14.01 16 31 H 0.00 -0.21 7.78 -2.39 -0.02 -0.23 16 32 H -0.03 -1.77 8.08 -2.39 -0.02 -1.79 16 33 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 Total: -1.00 -77.39 288.24 0.37 -77.02 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -0.39 Total: 16.96 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 3.43 Total: -0.51 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -4.65 Total: -113.74 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.05 Total: -27.35 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -77.39 0.37 -77.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104979918.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.073 kcal (2) G-P(sol) polarization free energy of solvation -77.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds