Wall clock time and date at job start Mon Mar 30 2020 04:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39286 * 125.81634 * 2 1 4 4 C 1.38651 * 133.33624 * 359.67563 * 3 2 1 5 5 C 1.38108 * 119.85200 * 179.85428 * 4 3 2 6 6 C 1.38445 * 120.27837 * 0.48294 * 5 4 3 7 7 C 1.38098 * 120.28496 * 359.73777 * 6 5 4 8 8 C 1.38663 * 119.85477 * 0.02562 * 7 6 5 9 9 N 1.39285 * 133.34240 * 179.97438 * 8 7 6 10 10 C 1.46501 * 125.81396 * 0.02904 * 9 8 7 11 11 C 1.52996 * 109.47356 * 89.99485 * 10 9 8 12 12 C 1.50702 * 109.47164 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99909 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00030 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99993 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99882 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46842 * 90.00235 * 16 14 12 18 18 H 1.48502 * 109.46914 * 210.00060 * 16 14 12 19 19 H 1.48490 * 109.47323 * 330.00215 * 16 14 12 20 20 C 1.34633 * 108.36531 * 180.02562 * 9 8 7 21 21 O 1.21687 * 125.16331 * 180.02562 * 20 9 8 22 22 H 1.09002 * 109.46980 * 89.99904 * 1 2 3 23 23 H 1.08994 * 109.47466 * 210.00028 * 1 2 3 24 24 H 1.08998 * 109.47295 * 330.00730 * 1 2 3 25 25 H 1.07998 * 120.07690 * 0.31505 * 4 3 2 26 26 H 1.08001 * 119.86087 * 180.24065 * 5 4 3 27 27 H 1.08008 * 119.85606 * 179.75209 * 6 5 4 28 28 H 1.08007 * 120.07483 * 180.02562 * 7 6 5 29 29 H 1.08999 * 109.46583 * 209.99522 * 10 9 8 30 30 H 1.09004 * 109.47253 * 329.99374 * 10 9 8 31 31 H 1.09000 * 109.47125 * 300.00119 * 11 10 9 32 32 H 1.09004 * 109.47030 * 59.99752 * 11 10 9 33 33 H 0.96998 * 119.99936 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.1295 0.0000 4 6 2.0192 2.4912 -0.0057 5 6 3.0662 3.3918 -0.0008 6 6 4.3751 2.9406 -0.0004 7 6 4.6448 1.5862 0.0007 8 6 3.6002 0.6743 0.0008 9 7 3.5462 -0.7175 0.0012 10 6 4.7000 -1.6202 0.0024 11 6 5.1007 -1.9338 1.4453 12 6 6.2873 -2.8629 1.4465 13 1 6.7132 -3.1960 0.5116 14 6 6.8290 -3.2877 2.6411 15 7 7.8648 -4.0981 2.6421 16 14 6.0927 -2.7110 4.2581 17 1 5.0340 -3.6603 4.6863 18 1 7.1555 -2.6547 5.2937 19 1 5.5033 -1.3598 4.0796 20 6 2.2529 -1.0918 0.0005 21 8 1.8563 -2.2422 0.0011 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 0.9995 2.8469 -0.0064 26 1 2.8631 4.4525 -0.0014 27 1 5.1887 3.6509 -0.0006 28 1 5.6672 1.2379 0.0015 29 1 4.4381 -2.5452 -0.5112 30 1 5.5350 -1.1433 -0.5111 31 1 5.3626 -1.0088 1.9589 32 1 4.2658 -2.4107 1.9588 33 1 8.2462 -4.3967 3.4825 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129092924.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:31 Heat of formation + Delta-G solvation = 25.222090 kcal Electronic energy + Delta-G solvation = -17496.894784 eV Core-core repulsion = 14716.475533 eV Total energy + Delta-G solvation = -2780.419251 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.24000 -38.14612 -35.86909 -35.65500 -33.17026 -31.08810 -30.39557 -28.78292 -27.48192 -24.89646 -22.38456 -22.28711 -21.30126 -19.90336 -17.78170 -17.43371 -16.62008 -16.32246 -15.82844 -14.75895 -14.34143 -14.24118 -14.05329 -13.96802 -13.57021 -13.04712 -12.83393 -12.71486 -12.50327 -12.14917 -11.84728 -11.17692 -11.07244 -10.88263 -10.40088 -10.33895 -10.04573 -9.88348 -9.78928 -9.34266 -8.60074 -8.25153 -7.56732 -6.11203 -4.11244 1.27560 1.45529 2.39742 3.20578 3.29408 3.36075 3.40590 3.45938 3.78583 4.40796 4.57184 4.77459 4.96209 5.15832 5.22770 5.23853 5.31381 5.40794 5.48524 5.53950 5.79686 5.85217 6.10594 6.17181 6.40472 6.43097 6.51617 6.63986 6.72351 6.93079 7.18872 7.19431 7.59865 7.66837 8.40540 8.49038 8.90400 9.50120 11.01489 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.024041 B = 0.007018 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.411831 B = 3988.650928 C = 4530.204621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.548 5.548 3 C 0.081 3.919 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.113 4.113 7 C -0.102 4.102 8 C 0.103 3.897 9 N -0.532 5.532 10 C 0.139 3.861 11 C -0.025 4.025 12 C -0.523 4.523 13 H 0.076 0.924 14 C 0.073 3.927 15 N -0.898 5.898 16 Si 0.878 3.122 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.266 1.266 20 C 0.675 3.325 21 O -0.553 6.553 22 H 0.065 0.935 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.124 0.876 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.134 0.866 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.021 0.979 32 H 0.019 0.981 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.819 16.518 -5.593 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.271 5.271 3 C -0.020 4.020 4 C -0.131 4.131 5 C -0.140 4.140 6 C -0.133 4.133 7 C -0.124 4.124 8 C 0.001 3.999 9 N -0.251 5.251 10 C 0.020 3.980 11 C -0.063 4.063 12 C -0.561 4.561 13 H 0.094 0.906 14 C -0.129 4.129 15 N -0.536 5.536 16 Si 0.705 3.295 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.191 1.191 20 C 0.378 3.622 21 O -0.429 6.429 22 H 0.084 0.916 23 H 0.104 0.896 24 H 0.097 0.903 25 H 0.142 0.858 26 H 0.146 0.854 27 H 0.148 0.852 28 H 0.152 0.848 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.011 15.413 -5.483 20.295 hybrid contribution -0.335 0.143 0.995 1.059 sum -12.346 15.556 -4.488 20.361 Atomic orbital electron populations 1.21643 0.75470 1.03981 1.02685 1.45060 1.06943 1.04808 1.70276 1.18110 0.88407 0.89239 1.06271 1.19945 0.99878 0.88528 1.04711 1.20763 0.92006 0.98980 1.02290 1.20832 0.96867 0.94264 1.01313 1.20219 0.97824 0.91673 1.02642 1.18206 0.93972 0.84008 1.03756 1.45738 1.07286 1.04764 1.67355 1.21889 0.83116 0.91644 1.01346 1.19924 0.97463 0.97465 0.91431 1.20872 1.12475 1.27901 0.94891 0.90558 1.24934 0.94529 0.94364 0.99072 1.69895 1.23068 1.33570 1.27064 0.86798 0.79062 0.79989 0.83617 1.20147 1.21138 1.19112 1.16055 0.80945 0.84475 0.80764 1.91018 1.76620 1.16807 1.58441 0.91641 0.89648 0.90272 0.85799 0.85434 0.85231 0.84809 0.89350 0.89741 0.96062 0.96316 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.13 11.00 59.85 0.66 1.79 16 2 N -0.55 -8.62 3.18 -126.33 -0.40 -9.02 16 3 C 0.08 1.19 6.83 -83.80 -0.57 0.62 16 4 C -0.11 -1.21 10.02 -39.48 -0.40 -1.61 16 5 C -0.12 -1.19 10.03 -39.55 -0.40 -1.59 16 6 C -0.11 -1.23 10.03 -39.56 -0.40 -1.63 16 7 C -0.10 -1.43 10.02 -39.48 -0.40 -1.83 16 8 C 0.10 1.71 6.83 -83.80 -0.57 1.14 16 9 N -0.53 -10.37 2.78 -118.90 -0.33 -10.70 16 10 C 0.14 2.91 5.91 -4.04 -0.02 2.89 16 11 C -0.02 -0.61 4.37 -27.88 -0.12 -0.73 16 12 C -0.52 -14.90 9.66 -34.44 -0.33 -15.24 16 13 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 14 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 15 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 16 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 17 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 20 C 0.67 13.49 8.45 -87.17 -0.74 12.75 16 21 O -0.55 -12.78 17.48 5.20 0.09 -12.68 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.08 0.97 8.03 -51.93 -0.42 0.56 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 26 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 27 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 28 H 0.13 1.81 8.06 -52.48 -0.42 1.38 16 29 H 0.09 1.91 8.03 -51.93 -0.42 1.50 16 30 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 31 H 0.02 0.52 7.20 -51.93 -0.37 0.15 16 32 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 288.05 15.07 4.34 4.34 Total: -1.00 -34.32 288.05 -7.73 -42.05 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -4.15 Total: -3.36 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -3.38 Total: -1.37 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.04 Total: -46.56 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -34.32 -7.73 -42.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129092924.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.272 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds