Wall clock time and date at job start Mon Mar 30 2020 04:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39286 * 125.81634 * 2 1 4 4 C 1.38651 * 133.33624 * 359.67563 * 3 2 1 5 5 C 1.38108 * 119.85200 * 179.85428 * 4 3 2 6 6 C 1.38445 * 120.27837 * 0.48294 * 5 4 3 7 7 C 1.38098 * 120.28496 * 359.73777 * 6 5 4 8 8 C 1.38663 * 119.85477 * 0.02562 * 7 6 5 9 9 N 1.39285 * 133.34240 * 179.97438 * 8 7 6 10 10 C 1.46501 * 125.81396 * 0.02904 * 9 8 7 11 11 C 1.52996 * 109.47356 * 89.99485 * 10 9 8 12 12 C 1.50702 * 109.47164 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99909 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00030 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99993 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99882 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46842 * 90.00235 * 16 14 12 18 18 H 1.48502 * 109.46914 * 210.00060 * 16 14 12 19 19 H 1.48490 * 109.47323 * 330.00215 * 16 14 12 20 20 C 1.34633 * 108.36531 * 180.02562 * 9 8 7 21 21 O 1.21687 * 125.16331 * 180.02562 * 20 9 8 22 22 H 1.09002 * 109.46980 * 89.99904 * 1 2 3 23 23 H 1.08994 * 109.47466 * 210.00028 * 1 2 3 24 24 H 1.08998 * 109.47295 * 330.00730 * 1 2 3 25 25 H 1.07998 * 120.07690 * 0.31505 * 4 3 2 26 26 H 1.08001 * 119.86087 * 180.24065 * 5 4 3 27 27 H 1.08008 * 119.85606 * 179.75209 * 6 5 4 28 28 H 1.08007 * 120.07483 * 180.02562 * 7 6 5 29 29 H 1.08999 * 109.46583 * 209.99522 * 10 9 8 30 30 H 1.09004 * 109.47253 * 329.99374 * 10 9 8 31 31 H 1.09000 * 109.47125 * 300.00119 * 11 10 9 32 32 H 1.09004 * 109.47030 * 59.99752 * 11 10 9 33 33 H 0.96998 * 119.99936 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.1295 0.0000 4 6 2.0192 2.4912 -0.0057 5 6 3.0662 3.3918 -0.0008 6 6 4.3751 2.9406 -0.0004 7 6 4.6448 1.5862 0.0007 8 6 3.6002 0.6743 0.0008 9 7 3.5462 -0.7175 0.0012 10 6 4.7000 -1.6202 0.0024 11 6 5.1007 -1.9338 1.4453 12 6 6.2873 -2.8629 1.4465 13 1 6.7132 -3.1960 0.5116 14 6 6.8290 -3.2877 2.6411 15 7 7.8648 -4.0981 2.6421 16 14 6.0927 -2.7110 4.2581 17 1 5.0340 -3.6603 4.6863 18 1 7.1555 -2.6547 5.2937 19 1 5.5033 -1.3598 4.0796 20 6 2.2529 -1.0918 0.0005 21 8 1.8563 -2.2422 0.0011 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 0.9995 2.8469 -0.0064 26 1 2.8631 4.4525 -0.0014 27 1 5.1887 3.6509 -0.0006 28 1 5.6672 1.2379 0.0015 29 1 4.4381 -2.5452 -0.5112 30 1 5.5350 -1.1433 -0.5111 31 1 5.3626 -1.0088 1.9589 32 1 4.2658 -2.4107 1.9588 33 1 8.2462 -4.3967 3.4825 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129092924.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:31 Heat of formation + Delta-G solvation = 3.624361 kcal Electronic energy + Delta-G solvation = -17497.831332 eV Core-core repulsion = 14716.475533 eV Total energy + Delta-G solvation = -2781.355799 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.47496 -39.33338 -37.33359 -36.91095 -35.18839 -32.90050 -31.34169 -30.05655 -28.72635 -26.55452 -23.62357 -23.37360 -23.00873 -21.30810 -19.24403 -18.89428 -18.15066 -17.67281 -17.05934 -16.43217 -16.06342 -15.47493 -15.23629 -14.97281 -14.95345 -14.62825 -14.52736 -14.06034 -13.68370 -13.35355 -13.05155 -13.03289 -12.75664 -12.18046 -12.01523 -11.85648 -11.68270 -11.54295 -11.44945 -11.24661 -10.86896 -9.29018 -8.78018 -8.38759 -6.44256 0.29963 0.47605 1.14741 1.27492 1.28726 1.40203 1.78081 2.26586 2.27055 2.84078 2.95628 3.55993 3.71611 4.06205 4.09548 4.28690 4.33060 4.40460 4.46127 4.51131 4.57233 4.64322 4.73164 4.90170 5.05240 5.09476 5.23865 5.35393 5.47107 5.57582 5.62673 5.78329 5.88707 6.13022 6.35964 6.60921 7.07563 7.20819 8.77116 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.024041 B = 0.007018 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.411831 B = 3988.650928 C = 4530.204621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.541 5.541 3 C 0.067 3.933 4 C -0.098 4.098 5 C -0.103 4.103 6 C -0.104 4.104 7 C -0.119 4.119 8 C 0.058 3.942 9 N -0.542 5.542 10 C 0.152 3.848 11 C -0.011 4.011 12 C -0.533 4.533 13 H 0.047 0.953 14 C 0.018 3.982 15 N -0.939 5.939 16 Si 0.942 3.058 17 H -0.276 1.276 18 H -0.270 1.270 19 H -0.255 1.255 20 C 0.655 3.345 21 O -0.605 6.605 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.117 0.883 25 H 0.162 0.838 26 H 0.173 0.827 27 H 0.162 0.838 28 H 0.127 0.873 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.026 0.974 32 H -0.001 1.001 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.330 20.770 -5.004 25.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.263 5.263 3 C -0.034 4.034 4 C -0.119 4.119 5 C -0.122 4.122 6 C -0.123 4.123 7 C -0.140 4.140 8 C -0.043 4.043 9 N -0.261 5.261 10 C 0.031 3.969 11 C -0.049 4.049 12 C -0.571 4.571 13 H 0.065 0.935 14 C -0.181 4.181 15 N -0.578 5.578 16 Si 0.766 3.234 17 H -0.201 1.201 18 H -0.195 1.195 19 H -0.179 1.179 20 C 0.358 3.642 21 O -0.485 6.485 22 H 0.101 0.899 23 H 0.091 0.909 24 H 0.136 0.864 25 H 0.179 0.821 26 H 0.190 0.810 27 H 0.179 0.821 28 H 0.145 0.855 29 H 0.088 0.912 30 H 0.119 0.881 31 H 0.045 0.955 32 H 0.017 0.983 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.540 19.753 -4.907 24.445 hybrid contribution 0.159 -1.020 0.721 1.259 sum -13.381 18.733 -4.186 23.398 Atomic orbital electron populations 1.22014 0.72876 1.05293 1.04313 1.45150 1.08274 1.03946 1.68938 1.18505 0.87216 0.90268 1.07397 1.20468 1.02302 0.86621 1.02528 1.21345 0.90905 1.00974 0.98993 1.21284 0.98776 0.93143 0.99098 1.20450 0.97114 0.92910 1.03530 1.18653 0.96092 0.82575 1.06949 1.45526 1.06580 1.06178 1.67854 1.21465 0.84654 0.91976 0.98801 1.19714 0.95072 0.96343 0.93812 1.21142 1.13507 1.28479 0.93986 0.93454 1.25806 0.94892 0.94474 1.02894 1.70014 1.24525 1.34935 1.28364 0.85779 0.78498 0.79866 0.79235 1.20124 1.19537 1.17911 1.16358 0.81556 0.84914 0.81397 1.90950 1.77535 1.18917 1.61137 0.89871 0.90856 0.86423 0.82094 0.80998 0.82088 0.85470 0.91183 0.88090 0.95545 0.98255 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.89 11.00 127.77 1.41 3.30 16 2 N -0.54 -16.56 3.18 -671.89 -2.14 -18.70 16 3 C 0.07 1.81 6.83 38.39 0.26 2.07 16 4 C -0.10 -1.68 10.02 22.34 0.22 -1.46 16 5 C -0.10 -1.42 10.03 22.29 0.22 -1.20 16 6 C -0.10 -1.81 10.03 22.29 0.22 -1.59 16 7 C -0.12 -3.13 10.02 22.34 0.22 -2.90 16 8 C 0.06 1.88 6.83 38.40 0.26 2.14 16 9 N -0.54 -21.75 2.78 -648.40 -1.81 -23.56 16 10 C 0.15 6.68 5.91 86.38 0.51 7.19 16 11 C -0.01 -0.57 4.37 29.85 0.13 -0.44 16 12 C -0.53 -31.55 9.66 25.60 0.25 -31.30 16 13 H 0.05 2.99 7.99 -2.91 -0.02 2.97 16 14 C 0.02 1.07 5.47 84.65 0.46 1.53 16 15 N -0.94 -59.15 13.96 21.45 0.30 -58.85 16 16 Si 0.94 46.29 27.47 68.60 1.88 48.18 16 17 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 19 H -0.26 -11.96 6.54 99.48 0.65 -11.30 16 20 C 0.65 27.08 8.45 179.14 1.51 28.59 16 21 O -0.60 -29.56 17.48 -4.31 -0.08 -29.64 16 22 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.07 1.65 8.03 -2.39 -0.02 1.63 16 24 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 26 H 0.17 0.99 8.06 -2.91 -0.02 0.96 16 27 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 28 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 29 H 0.07 3.27 8.03 -2.39 -0.02 3.25 16 30 H 0.10 3.99 8.14 -2.38 -0.02 3.97 16 31 H 0.03 1.31 7.20 -2.39 -0.02 1.29 16 32 H 0.00 -0.05 7.57 -2.38 -0.02 -0.07 16 33 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -79.01 288.05 4.90 -74.11 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: 1.05 Total: 2.53 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 5.69 Total: 5.93 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -3.65 Total: -101.11 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.08 Total: -29.64 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.88 Total: 48.18 kcal Total: -79.01 4.90 -74.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129092924.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.739 kcal (2) G-P(sol) polarization free energy of solvation -79.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds