Wall clock time and date at job start Mon Mar 30 2020 04:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48045 * 110.99944 * 2 1 4 4 C 1.51194 * 105.67342 * 268.22524 * 3 2 1 5 5 C 1.38306 * 131.72380 * 162.48090 * 4 3 2 6 6 C 1.38306 * 120.20447 * 179.97438 * 5 4 3 7 7 C 1.38082 * 120.09867 * 0.03022 * 6 5 4 8 8 C 1.39016 * 119.90669 * 359.73337 * 7 6 5 9 9 N 1.39535 * 120.07234 * 180.28208 * 8 7 6 10 10 C 1.34775 * 120.00159 * 325.28779 * 9 8 7 11 11 O 1.21745 * 119.99550 * 4.48577 * 10 9 8 12 12 C 1.46161 * 120.00038 * 184.48321 * 10 9 8 13 13 H 1.08003 * 120.00504 * 0.02562 * 12 10 9 14 14 C 1.40125 * 119.99824 * 179.97438 * 12 10 9 15 15 N 1.30633 * 120.00088 * 0.02562 * 14 12 10 16 16 Si 1.86807 * 119.99952 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46994 * 90.00276 * 16 14 12 18 18 H 1.48504 * 109.46995 * 210.00573 * 16 14 12 19 19 H 1.48499 * 109.47060 * 330.00201 * 16 14 12 20 20 C 1.38263 * 108.26296 * 342.50675 * 4 3 2 21 21 C 1.48058 * 110.99689 * 245.02625 * 2 1 3 22 22 H 1.09001 * 109.47526 * 174.97063 * 1 2 3 23 23 H 1.09006 * 109.47324 * 294.97418 * 1 2 3 24 24 H 1.09007 * 109.47001 * 54.97414 * 1 2 3 25 25 H 1.09001 * 110.21097 * 27.27956 * 3 2 1 26 26 H 1.09000 * 110.20636 * 149.17588 * 3 2 1 27 27 H 1.07999 * 119.89551 * 0.02562 * 5 4 3 28 28 H 1.08000 * 119.95196 * 180.02562 * 6 5 4 29 29 H 1.08003 * 120.04753 * 179.97438 * 7 6 5 30 30 H 0.97000 * 119.99843 * 145.28938 * 9 8 7 31 31 H 0.97008 * 120.00142 * 179.97438 * 15 14 12 32 32 H 1.08998 * 110.21085 * 332.72615 * 21 2 1 33 33 H 1.09006 * 110.20516 * 210.82781 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9995 1.3821 0.0000 4 6 2.1880 1.7473 -1.4550 5 6 2.3447 2.9687 -2.0847 6 6 2.5030 3.0287 -3.4573 7 6 2.5045 1.8681 -4.2056 8 6 2.3522 0.6378 -3.5766 9 7 2.3591 -0.5375 -4.3287 10 6 1.8276 -0.5482 -5.5672 11 8 1.4154 0.4852 -6.0616 12 6 1.7459 -1.8004 -6.3167 13 1 2.1112 -2.7172 -5.8779 14 6 1.1928 -1.8116 -7.6041 15 7 0.7505 -0.7028 -8.1346 16 14 1.0878 -3.4121 -8.5617 17 1 -0.2060 -4.0798 -8.2695 18 1 1.1798 -3.1257 -10.0160 19 1 2.2063 -4.3029 -8.1610 20 6 2.1880 0.5812 -2.1979 21 6 1.9995 -0.5836 -1.2530 22 1 -0.3634 -1.0237 -0.0901 23 1 -0.3634 0.4339 0.9316 24 1 -0.3633 0.5899 -0.8416 25 1 1.2857 2.0595 0.4688 26 1 2.9545 1.4188 0.5241 27 1 2.3444 3.8784 -1.5025 28 1 2.6255 3.9846 -3.9448 29 1 2.6277 1.9160 -5.2775 30 1 2.7464 -1.3469 -3.9602 31 1 0.3680 -0.7104 -9.0260 32 1 1.2857 -1.2945 -1.6691 33 1 2.9546 -1.0743 -1.0650 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169807526.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:54 Heat of formation + Delta-G solvation = 1.881050 kcal Electronic energy + Delta-G solvation = -17455.369197 eV Core-core repulsion = 14673.937802 eV Total energy + Delta-G solvation = -2781.431395 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.26284 -37.94745 -36.07267 -33.53771 -32.50690 -30.63862 -29.61720 -27.28327 -26.48798 -25.96989 -22.23649 -21.38301 -20.79570 -19.36407 -17.61739 -16.21473 -15.68688 -15.59319 -15.28074 -14.62380 -14.39278 -14.13450 -13.68548 -13.11216 -12.81708 -12.60042 -12.38352 -12.10308 -11.94256 -11.55019 -11.39830 -11.24659 -11.04788 -10.91195 -10.74056 -10.63535 -10.36365 -9.30581 -8.91142 -8.66515 -8.13898 -7.73206 -7.11716 -6.37836 -4.85525 1.84065 1.97824 3.04929 3.12100 3.15459 3.96144 4.10325 4.17913 4.48027 4.60519 4.73359 5.03035 5.31013 5.36176 5.53387 5.60081 5.65166 5.73723 5.81297 5.85010 5.94128 5.98648 6.20535 6.36846 6.49272 6.64394 6.92537 7.00118 7.09816 7.12182 7.24931 7.40035 7.69664 8.02749 8.14516 8.81794 9.18369 10.34872 10.53230 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031510 B = 0.006144 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.386153 B = 4556.430049 C = 5165.013970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.508 5.508 3 C 0.081 3.919 4 C -0.114 4.114 5 C -0.144 4.144 6 C -0.101 4.101 7 C -0.128 4.128 8 C 0.214 3.786 9 N -0.699 5.699 10 C 0.543 3.457 11 O -0.560 6.560 12 C -0.538 4.538 13 H 0.072 0.928 14 C 0.087 3.913 15 N -0.760 5.760 16 Si 0.913 3.087 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.263 1.263 20 C -0.185 4.185 21 C 0.086 3.914 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.034 0.966 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.111 0.889 28 H 0.118 0.882 29 H 0.146 0.854 30 H 0.393 0.607 31 H 0.272 0.728 32 H 0.076 0.924 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.139 1.459 11.780 12.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.229 5.229 3 C -0.047 4.047 4 C -0.116 4.116 5 C -0.164 4.164 6 C -0.120 4.120 7 C -0.149 4.149 8 C 0.114 3.886 9 N -0.342 5.342 10 C 0.350 3.650 11 O -0.442 6.442 12 C -0.574 4.574 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.387 5.387 16 Si 0.737 3.263 17 H -0.196 1.196 18 H -0.203 1.203 19 H -0.187 1.187 20 C -0.190 4.190 21 C -0.042 4.042 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.053 0.947 25 H 0.093 0.907 26 H 0.110 0.890 27 H 0.129 0.871 28 H 0.136 0.864 29 H 0.164 0.836 30 H 0.226 0.774 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.856 1.881 11.674 11.969 hybrid contribution -0.244 -0.645 -1.105 1.303 sum 1.612 1.236 10.569 10.762 Atomic orbital electron populations 1.22596 0.87937 1.02191 1.01046 1.65208 1.08642 1.15000 1.34025 1.21676 1.00928 0.89581 0.92513 1.20747 1.01481 0.93566 0.95792 1.20213 1.06120 0.95738 0.94345 1.20947 0.99752 0.98031 0.93288 1.21507 1.00928 0.90655 1.01775 1.17426 0.94515 0.88467 0.88159 1.44108 1.62293 1.09518 1.18278 1.18392 0.77465 0.90859 0.78284 1.90615 1.51517 1.34451 1.67653 1.20850 1.42764 0.93419 1.00391 0.90979 1.25746 0.93027 0.97338 0.97350 1.69983 1.27378 1.27082 1.14304 0.86281 0.79433 0.81872 0.78726 1.19570 1.20254 1.18720 1.20767 1.08396 0.96481 0.93344 1.21546 1.00935 0.95049 0.86626 0.91180 0.91366 0.94741 0.90736 0.89031 0.87136 0.86356 0.83615 0.77432 0.91709 0.90532 0.89324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.16 60.07 0.55 0.69 16 2 N -0.51 -7.08 5.79 -243.20 -1.41 -8.49 16 3 C 0.08 1.08 6.64 -4.10 -0.03 1.05 16 4 C -0.11 -1.86 6.15 -104.35 -0.64 -2.50 16 5 C -0.14 -2.32 10.04 -39.53 -0.40 -2.72 16 6 C -0.10 -1.81 10.04 -39.61 -0.40 -2.21 16 7 C -0.13 -2.76 8.70 -39.35 -0.34 -3.10 16 8 C 0.21 4.55 6.30 -83.80 -0.53 4.03 16 9 N -0.70 -15.75 5.29 -11.22 -0.06 -15.81 16 10 C 0.54 14.97 7.58 -13.08 -0.10 14.87 16 11 O -0.56 -17.32 12.42 5.15 0.06 -17.26 16 12 C -0.54 -14.60 9.53 -35.70 -0.34 -14.94 16 13 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 14 C 0.09 2.32 5.50 -17.35 -0.10 2.23 16 15 N -0.76 -21.93 11.82 55.55 0.66 -21.27 16 16 Si 0.91 19.38 29.56 -169.99 -5.02 14.36 16 17 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 20 C -0.18 -3.35 6.13 -104.12 -0.64 -3.99 16 21 C 0.09 1.32 6.61 -4.11 -0.03 1.29 16 22 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.03 0.50 8.06 -51.93 -0.42 0.08 16 25 H 0.07 0.88 7.80 -51.93 -0.41 0.48 16 26 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.15 3.57 6.19 -52.48 -0.32 3.25 16 30 H 0.39 7.64 8.80 -40.82 -0.36 7.29 16 31 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 32 H 0.08 1.20 7.76 -51.93 -0.40 0.79 16 33 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 281.97 15.07 4.25 4.25 Total: -1.00 -31.97 281.97 -8.50 -40.46 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -3.99 Total: 9.06 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -2.98 Total: -5.30 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -0.81 Total: -45.58 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: 0.06 Total: -17.26 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.97 -8.50 -40.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169807526.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.343 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds