Wall clock time and date at job start Mon Mar 30 2020 04:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48045 * 110.99944 * 2 1 4 4 C 1.51194 * 105.67342 * 268.22524 * 3 2 1 5 5 C 1.38306 * 131.72380 * 162.48090 * 4 3 2 6 6 C 1.38306 * 120.20447 * 179.97438 * 5 4 3 7 7 C 1.38082 * 120.09867 * 0.03022 * 6 5 4 8 8 C 1.39016 * 119.90669 * 359.73337 * 7 6 5 9 9 N 1.39535 * 120.07234 * 180.28208 * 8 7 6 10 10 C 1.34775 * 120.00159 * 325.28779 * 9 8 7 11 11 O 1.21745 * 119.99550 * 4.48577 * 10 9 8 12 12 C 1.46161 * 120.00038 * 184.48321 * 10 9 8 13 13 H 1.08003 * 120.00504 * 0.02562 * 12 10 9 14 14 C 1.40125 * 119.99824 * 179.97438 * 12 10 9 15 15 N 1.30633 * 120.00088 * 0.02562 * 14 12 10 16 16 Si 1.86807 * 119.99952 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46994 * 90.00276 * 16 14 12 18 18 H 1.48504 * 109.46995 * 210.00573 * 16 14 12 19 19 H 1.48499 * 109.47060 * 330.00201 * 16 14 12 20 20 C 1.38263 * 108.26296 * 342.50675 * 4 3 2 21 21 C 1.48058 * 110.99689 * 245.02625 * 2 1 3 22 22 H 1.09001 * 109.47526 * 174.97063 * 1 2 3 23 23 H 1.09006 * 109.47324 * 294.97418 * 1 2 3 24 24 H 1.09007 * 109.47001 * 54.97414 * 1 2 3 25 25 H 1.09001 * 110.21097 * 27.27956 * 3 2 1 26 26 H 1.09000 * 110.20636 * 149.17588 * 3 2 1 27 27 H 1.07999 * 119.89551 * 0.02562 * 5 4 3 28 28 H 1.08000 * 119.95196 * 180.02562 * 6 5 4 29 29 H 1.08003 * 120.04753 * 179.97438 * 7 6 5 30 30 H 0.97000 * 119.99843 * 145.28938 * 9 8 7 31 31 H 0.97008 * 120.00142 * 179.97438 * 15 14 12 32 32 H 1.08998 * 110.21085 * 332.72615 * 21 2 1 33 33 H 1.09006 * 110.20516 * 210.82781 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9995 1.3821 0.0000 4 6 2.1880 1.7473 -1.4550 5 6 2.3447 2.9687 -2.0847 6 6 2.5030 3.0287 -3.4573 7 6 2.5045 1.8681 -4.2056 8 6 2.3522 0.6378 -3.5766 9 7 2.3591 -0.5375 -4.3287 10 6 1.8276 -0.5482 -5.5672 11 8 1.4154 0.4852 -6.0616 12 6 1.7459 -1.8004 -6.3167 13 1 2.1112 -2.7172 -5.8779 14 6 1.1928 -1.8116 -7.6041 15 7 0.7505 -0.7028 -8.1346 16 14 1.0878 -3.4121 -8.5617 17 1 -0.2060 -4.0798 -8.2695 18 1 1.1798 -3.1257 -10.0160 19 1 2.2063 -4.3029 -8.1610 20 6 2.1880 0.5812 -2.1979 21 6 1.9995 -0.5836 -1.2530 22 1 -0.3634 -1.0237 -0.0901 23 1 -0.3634 0.4339 0.9316 24 1 -0.3633 0.5899 -0.8416 25 1 1.2857 2.0595 0.4688 26 1 2.9545 1.4188 0.5241 27 1 2.3444 3.8784 -1.5025 28 1 2.6255 3.9846 -3.9448 29 1 2.6277 1.9160 -5.2775 30 1 2.7464 -1.3469 -3.9602 31 1 0.3680 -0.7104 -9.0260 32 1 1.2857 -1.2945 -1.6691 33 1 2.9546 -1.0743 -1.0650 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169807526.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:54 Heat of formation + Delta-G solvation = -21.703100 kcal Electronic energy + Delta-G solvation = -17456.391882 eV Core-core repulsion = 14673.937802 eV Total energy + Delta-G solvation = -2782.454080 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.64768 -39.70955 -37.56717 -35.35470 -34.56802 -31.92877 -31.16326 -28.83920 -27.89720 -27.49644 -23.78158 -22.78368 -22.21435 -21.03655 -19.50469 -17.84836 -17.55205 -16.81844 -16.76559 -16.05147 -15.83898 -15.64948 -15.20940 -14.67273 -14.35623 -14.29621 -13.82075 -13.50992 -13.24595 -13.08201 -12.83946 -12.78203 -12.54926 -12.46056 -12.28976 -12.10665 -12.04659 -11.08715 -10.82437 -9.93519 -9.80902 -9.44188 -8.79595 -8.39676 -6.98240 0.39867 0.49651 1.37715 1.38983 1.54947 2.18660 2.33947 2.80926 2.90187 3.02171 3.45904 3.53244 3.78661 4.22507 4.23978 4.30123 4.42431 4.55756 4.64416 4.72103 4.73487 4.88748 4.93059 4.97632 5.08674 5.22100 5.40671 5.45125 5.59991 5.71250 5.78968 5.88707 5.96341 6.12355 6.37518 6.74546 7.29487 8.31532 8.53586 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031510 B = 0.006144 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.386153 B = 4556.430049 C = 5165.013970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.503 5.503 3 C 0.084 3.916 4 C -0.112 4.112 5 C -0.131 4.131 6 C -0.103 4.103 7 C -0.162 4.162 8 C 0.177 3.823 9 N -0.692 5.692 10 C 0.529 3.471 11 O -0.607 6.607 12 C -0.566 4.566 13 H 0.092 0.908 14 C 0.030 3.970 15 N -0.814 5.814 16 Si 1.002 2.998 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.247 1.247 20 C -0.188 4.188 21 C 0.089 3.911 22 H 0.074 0.926 23 H 0.095 0.905 24 H 0.011 0.989 25 H 0.099 0.901 26 H 0.114 0.886 27 H 0.153 0.847 28 H 0.140 0.860 29 H 0.102 0.898 30 H 0.405 0.595 31 H 0.278 0.722 32 H 0.069 0.931 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.273 0.750 14.323 14.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.224 5.224 3 C -0.043 4.043 4 C -0.114 4.114 5 C -0.150 4.150 6 C -0.122 4.122 7 C -0.183 4.183 8 C 0.079 3.921 9 N -0.336 5.336 10 C 0.336 3.664 11 O -0.493 6.493 12 C -0.601 4.601 13 H 0.111 0.889 14 C -0.187 4.187 15 N -0.443 5.443 16 Si 0.820 3.180 17 H -0.185 1.185 18 H -0.196 1.196 19 H -0.170 1.170 20 C -0.192 4.192 21 C -0.039 4.039 22 H 0.093 0.907 23 H 0.113 0.887 24 H 0.030 0.970 25 H 0.117 0.883 26 H 0.132 0.868 27 H 0.171 0.829 28 H 0.158 0.842 29 H 0.120 0.880 30 H 0.240 0.760 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.017 1.175 14.285 14.475 hybrid contribution -0.267 -0.302 -1.744 1.790 sum 1.750 0.873 12.541 12.693 Atomic orbital electron populations 1.22686 0.87295 1.02449 1.01433 1.65275 1.09211 1.15418 1.32462 1.21858 1.02764 0.89427 0.90286 1.21306 0.99546 0.92939 0.97598 1.20643 1.03416 0.97443 0.93526 1.21194 0.99067 0.97520 0.94385 1.21327 1.03998 0.92805 1.00179 1.17661 0.97115 0.87675 0.89618 1.43643 1.62049 1.10731 1.17157 1.18760 0.77350 0.90655 0.79650 1.90576 1.53550 1.35837 1.69290 1.21398 1.43353 0.94024 1.01355 0.88946 1.27022 0.91698 1.01696 0.98238 1.70148 1.28663 1.30357 1.15131 0.84955 0.80118 0.76163 0.76719 1.18531 1.19632 1.17020 1.21063 1.07125 0.98875 0.92168 1.21603 1.01674 0.94049 0.86601 0.90707 0.88668 0.97047 0.88269 0.86785 0.82932 0.84223 0.87992 0.76034 0.91204 0.91292 0.87746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.16 127.69 1.17 1.40 16 2 N -0.50 -12.37 5.79 -923.34 -5.34 -17.71 16 3 C 0.08 1.88 6.64 85.49 0.57 2.45 16 4 C -0.11 -3.36 6.15 -19.69 -0.12 -3.48 16 5 C -0.13 -3.86 10.04 22.30 0.22 -3.63 16 6 C -0.10 -3.67 10.04 22.25 0.22 -3.45 16 7 C -0.16 -7.42 8.70 22.42 0.19 -7.22 16 8 C 0.18 7.83 6.30 38.28 0.24 8.07 16 9 N -0.69 -32.72 5.29 -307.60 -1.63 -34.35 16 10 C 0.53 30.81 7.58 86.30 0.65 31.47 16 11 O -0.61 -40.23 12.42 -4.49 -0.06 -40.28 16 12 C -0.57 -31.61 9.53 24.79 0.24 -31.38 16 13 H 0.09 4.58 7.85 -2.91 -0.02 4.56 16 14 C 0.03 1.63 5.50 85.33 0.47 2.10 16 15 N -0.81 -49.08 11.82 21.85 0.26 -48.82 16 16 Si 1.00 40.00 29.56 68.60 2.03 42.03 16 17 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 18 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 19 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 20 C -0.19 -6.66 6.13 -19.54 -0.12 -6.78 16 21 C 0.09 2.57 6.61 85.48 0.57 3.13 16 22 H 0.07 1.63 8.09 -2.39 -0.02 1.61 16 23 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 24 H 0.01 0.30 8.06 -2.38 -0.02 0.28 16 25 H 0.10 1.81 7.80 -2.39 -0.02 1.79 16 26 H 0.11 2.14 8.14 -2.39 -0.02 2.13 16 27 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 28 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 29 H 0.10 5.52 6.19 -2.91 -0.02 5.50 16 30 H 0.40 16.34 8.80 -92.71 -0.82 15.52 16 31 H 0.28 15.12 8.29 -92.70 -0.77 14.35 16 32 H 0.07 2.10 7.76 -2.39 -0.02 2.08 16 33 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16 Total: -1.00 -74.20 281.97 -0.12 -74.32 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: 0.31 Total: 32.14 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 4.31 Total: -7.33 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -6.71 Total: -100.88 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -0.06 Total: -40.28 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -74.20 -0.12 -74.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169807526.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.618 kcal (2) G-P(sol) polarization free energy of solvation -74.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds