Wall clock time and date at job start Mon Mar 30 2020 03:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38330 * 119.79700 * 2 1 4 4 C 1.38506 * 119.86354 * 180.26128 * 3 2 1 5 5 C 1.39870 * 119.65127 * 359.90155 * 4 3 2 6 6 C 1.38532 * 120.14178 * 359.81462 * 5 4 3 7 7 C 1.38301 * 119.71652 * 0.06317 * 6 5 4 8 8 C 1.50702 * 119.89208 * 180.02562 * 7 6 5 9 9 N 1.39623 * 118.74259 * 179.62628 * 5 4 3 10 10 C 1.36810 * 121.03468 * 150.66110 * 9 5 4 11 11 H 1.08000 * 119.99375 * 335.02029 * 10 9 5 12 12 C 1.38766 * 120.00041 * 155.02217 * 10 9 5 13 13 N 1.31611 * 119.99900 * 159.84228 * 12 10 9 14 14 Si 1.86797 * 119.99709 * 339.84341 * 12 10 9 15 15 H 1.48507 * 109.47127 * 87.99920 * 14 12 10 16 16 H 1.48504 * 109.46912 * 207.99233 * 14 12 10 17 17 H 1.48490 * 109.47405 * 327.99619 * 14 12 10 18 18 C 1.47040 * 117.93068 * 330.63886 * 9 5 4 19 19 C 1.50733 * 109.04871 * 42.06133 * 18 9 5 20 20 O 1.21297 * 119.63468 * 150.94577 * 19 18 9 21 21 N 1.34672 * 120.73710 * 330.93310 * 19 18 9 22 22 H 1.08999 * 109.46627 * 270.24785 * 1 2 3 23 23 H 1.09004 * 109.47233 * 30.24108 * 1 2 3 24 24 H 1.08988 * 109.47313 * 150.24978 * 1 2 3 25 25 H 1.07997 * 120.06767 * 359.97438 * 3 2 1 26 26 H 1.07997 * 120.14148 * 180.08777 * 6 5 4 27 27 H 1.09002 * 109.47066 * 90.00179 * 8 7 6 28 28 H 1.08996 * 109.47054 * 210.00257 * 8 7 6 29 29 H 1.08999 * 109.46841 * 330.00442 * 8 7 6 30 30 H 0.96992 * 120.00013 * 179.97438 * 13 12 10 31 31 H 1.08997 * 109.54358 * 161.93598 * 18 9 5 32 32 H 1.09000 * 109.54232 * 282.10780 * 18 9 5 33 33 H 0.97001 * 119.67861 * 182.40866 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.2004 0.0000 4 6 3.5795 1.2020 -0.0055 5 6 4.2729 -0.0127 -0.0089 6 6 3.5773 -1.2107 -0.0029 7 6 2.1943 -1.2005 0.0051 8 6 1.4337 -2.5015 0.0122 9 7 5.6688 0.0111 -0.0224 10 6 6.3970 -0.9972 0.5477 11 1 5.9665 -1.5934 1.3387 12 6 7.6885 -1.2536 0.1097 13 7 8.5240 -1.9194 0.8783 14 14 8.2411 -0.6537 -1.5708 15 1 8.7758 0.7267 -1.4524 16 1 9.3019 -1.5523 -2.0928 17 1 7.0852 -0.6586 -2.5029 18 6 6.3320 1.1531 -0.6688 19 6 5.6098 2.4206 -0.2894 20 8 6.2208 3.4673 -0.2402 21 7 4.2936 2.4040 -0.0047 22 1 -0.3632 0.0044 1.0277 23 1 -0.3634 0.8878 -0.5176 24 1 -0.3633 -0.8921 -0.5099 25 1 1.6522 2.1344 -0.0004 26 1 4.1127 -2.1487 -0.0041 27 1 1.2562 -2.8130 1.0416 28 1 0.4791 -2.3669 -0.4964 29 1 2.0156 -3.2654 -0.5034 30 1 9.4265 -2.0990 0.5721 31 1 7.3680 1.2099 -0.3350 32 1 6.3041 1.0262 -1.7511 33 1 3.8368 3.2340 0.2035 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211388413.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:12 Heat of formation + Delta-G solvation = 4.294774 kcal Electronic energy + Delta-G solvation = -17855.967533 eV Core-core repulsion = 15074.640805 eV Total energy + Delta-G solvation = -2781.326728 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41516 -38.35326 -36.32816 -34.86658 -32.37392 -31.18854 -30.94923 -27.75288 -26.78562 -25.74618 -23.21372 -21.55708 -21.50386 -18.67702 -17.72805 -17.27898 -16.57916 -15.63332 -15.36040 -14.61698 -14.44508 -13.92028 -13.75505 -13.39821 -13.17487 -13.03357 -12.64746 -12.45448 -12.23908 -12.10319 -11.62573 -11.57011 -11.07700 -10.79226 -10.61301 -10.47756 -10.15644 -9.95509 -9.73852 -9.29743 -8.67803 -7.68059 -6.76716 -6.57586 -3.91489 1.85290 2.10389 2.94365 3.04283 3.13410 3.15527 3.54571 3.98291 4.18806 4.34936 4.79774 5.00336 5.27903 5.39263 5.54647 5.66509 5.72424 5.75554 5.84057 5.84416 6.03224 6.09789 6.15813 6.23101 6.42233 6.66559 6.74090 6.79910 7.19838 7.31137 7.43042 7.48816 7.67316 7.93254 8.30624 8.45895 9.00490 9.25698 10.51905 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.022526 B = 0.009420 C = 0.007157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.733930 B = 2971.718954 C = 3911.343765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.154 4.154 3 C -0.101 4.101 4 C 0.046 3.954 5 C 0.181 3.819 6 C -0.154 4.154 7 C -0.062 4.062 8 C -0.110 4.110 9 N -0.476 5.476 10 C -0.299 4.299 11 H 0.111 0.889 12 C 0.049 3.951 13 N -0.860 5.860 14 Si 0.874 3.126 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.262 1.262 18 C 0.083 3.917 19 C 0.508 3.492 20 O -0.550 6.550 21 N -0.647 5.647 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.113 0.887 26 H 0.129 0.871 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.278 0.722 31 H 0.118 0.882 32 H 0.079 0.921 33 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.954 1.630 -3.235 12.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.158 4.158 3 C -0.122 4.122 4 C -0.053 4.053 5 C 0.070 3.930 6 C -0.178 4.178 7 C -0.063 4.063 8 C -0.167 4.167 9 N -0.173 5.173 10 C -0.425 4.425 11 H 0.129 0.871 12 C -0.158 4.158 13 N -0.494 5.494 14 Si 0.701 3.299 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.186 1.186 18 C -0.044 4.044 19 C 0.295 3.705 20 O -0.427 6.427 21 N -0.290 5.290 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.131 0.869 26 H 0.147 0.853 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.136 0.864 32 H 0.097 0.903 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -10.952 1.937 -3.206 11.575 hybrid contribution 0.388 0.622 -0.672 0.994 sum -10.565 2.559 -3.877 11.541 Atomic orbital electron populations 1.20604 0.92259 1.01533 1.01035 1.18964 0.94805 0.91850 1.10140 1.20079 0.90616 0.97571 1.03958 1.17372 0.91204 0.84017 1.12677 1.17553 0.83717 0.91813 0.99917 1.20352 0.92484 0.96680 1.08281 1.19383 0.92921 0.94162 0.99862 1.20775 0.99498 0.94720 1.01695 1.42503 1.00820 1.18368 1.55641 1.19096 0.96186 1.11452 1.15779 0.87128 1.25320 0.95849 0.96552 0.98034 1.69786 1.05849 1.38519 1.35283 0.87127 0.79219 0.78619 0.84952 1.19682 1.21065 1.18647 1.22294 0.99064 0.83876 0.99132 1.21354 0.81551 0.91055 0.76512 1.90701 1.65723 1.32926 1.53360 1.43351 1.09351 1.08957 1.67373 0.92588 0.92878 0.92021 0.86906 0.85318 0.91763 0.91843 0.92015 0.91190 0.86433 0.90349 0.76145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 9.59 36.01 0.35 -0.79 16 2 C -0.15 -2.36 5.88 -104.55 -0.62 -2.98 16 3 C -0.10 -1.61 9.58 -39.45 -0.38 -1.99 16 4 C 0.05 0.88 6.59 -83.51 -0.55 0.33 16 5 C 0.18 3.84 6.16 -83.59 -0.51 3.32 16 6 C -0.15 -3.01 9.00 -39.45 -0.36 -3.36 16 7 C -0.06 -1.01 5.88 -104.56 -0.62 -1.63 16 8 C -0.11 -1.42 9.60 36.01 0.35 -1.08 16 9 N -0.48 -11.18 2.82 -113.84 -0.32 -11.50 16 10 C -0.30 -7.74 9.17 -15.14 -0.14 -7.87 16 11 H 0.11 3.04 7.92 -52.49 -0.42 2.63 16 12 C 0.05 1.28 5.25 -17.45 -0.09 1.18 16 13 N -0.86 -23.64 13.97 55.49 0.78 -22.87 16 14 Si 0.87 19.93 24.13 -169.99 -4.10 15.83 16 15 H -0.27 -6.02 6.47 56.52 0.37 -5.66 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.26 -5.86 6.61 56.52 0.37 -5.48 16 18 C 0.08 1.85 4.29 -4.88 -0.02 1.83 16 19 C 0.51 10.80 7.90 -11.02 -0.09 10.72 16 20 O -0.55 -12.68 17.91 5.54 0.10 -12.58 16 21 N -0.65 -11.91 5.38 -9.75 -0.05 -11.97 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 24 H 0.06 0.65 5.91 -51.94 -0.31 0.34 16 25 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 26 H 0.13 2.59 7.49 -52.49 -0.39 2.20 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.70 5.91 -51.93 -0.31 0.39 16 29 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 30 H 0.28 7.13 8.31 -40.82 -0.34 6.80 16 31 H 0.12 2.75 5.15 -51.93 -0.27 2.49 16 32 H 0.08 1.66 6.28 -51.93 -0.33 1.34 16 33 H 0.40 6.21 8.83 -40.82 -0.36 5.85 16 LS Contribution 269.60 15.07 4.06 4.06 Total: -1.00 -28.51 269.60 -5.90 -34.41 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -3.68 Total: 6.94 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.68 Total: -2.32 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.40 Total: -46.34 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.10 Total: -12.58 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.10 Total: 15.83 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.51 -5.90 -34.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211388413.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.705 kcal (2) G-P(sol) polarization free energy of solvation -28.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds