Wall clock time and date at job start Mon Mar 30 2020 03:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38330 * 119.79700 * 2 1 4 4 C 1.38506 * 119.86354 * 180.26128 * 3 2 1 5 5 C 1.39870 * 119.65127 * 359.90155 * 4 3 2 6 6 C 1.38532 * 120.14178 * 359.81462 * 5 4 3 7 7 C 1.38301 * 119.71652 * 0.06317 * 6 5 4 8 8 C 1.50702 * 119.89208 * 180.02562 * 7 6 5 9 9 N 1.39623 * 118.74259 * 179.62628 * 5 4 3 10 10 C 1.36810 * 121.03468 * 150.66110 * 9 5 4 11 11 H 1.08000 * 119.99375 * 335.02029 * 10 9 5 12 12 C 1.38766 * 120.00041 * 155.02217 * 10 9 5 13 13 N 1.31611 * 119.99900 * 159.84228 * 12 10 9 14 14 Si 1.86797 * 119.99709 * 339.84341 * 12 10 9 15 15 H 1.48507 * 109.47127 * 87.99920 * 14 12 10 16 16 H 1.48504 * 109.46912 * 207.99233 * 14 12 10 17 17 H 1.48490 * 109.47405 * 327.99619 * 14 12 10 18 18 C 1.47040 * 117.93068 * 330.63886 * 9 5 4 19 19 C 1.50733 * 109.04871 * 42.06133 * 18 9 5 20 20 O 1.21297 * 119.63468 * 150.94577 * 19 18 9 21 21 N 1.34672 * 120.73710 * 330.93310 * 19 18 9 22 22 H 1.08999 * 109.46627 * 270.24785 * 1 2 3 23 23 H 1.09004 * 109.47233 * 30.24108 * 1 2 3 24 24 H 1.08988 * 109.47313 * 150.24978 * 1 2 3 25 25 H 1.07997 * 120.06767 * 359.97438 * 3 2 1 26 26 H 1.07997 * 120.14148 * 180.08777 * 6 5 4 27 27 H 1.09002 * 109.47066 * 90.00179 * 8 7 6 28 28 H 1.08996 * 109.47054 * 210.00257 * 8 7 6 29 29 H 1.08999 * 109.46841 * 330.00442 * 8 7 6 30 30 H 0.96992 * 120.00013 * 179.97438 * 13 12 10 31 31 H 1.08997 * 109.54358 * 161.93598 * 18 9 5 32 32 H 1.09000 * 109.54232 * 282.10780 * 18 9 5 33 33 H 0.97001 * 119.67861 * 182.40866 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.2004 0.0000 4 6 3.5795 1.2020 -0.0055 5 6 4.2729 -0.0127 -0.0089 6 6 3.5773 -1.2107 -0.0029 7 6 2.1943 -1.2005 0.0051 8 6 1.4337 -2.5015 0.0122 9 7 5.6688 0.0111 -0.0224 10 6 6.3970 -0.9972 0.5477 11 1 5.9665 -1.5934 1.3387 12 6 7.6885 -1.2536 0.1097 13 7 8.5240 -1.9194 0.8783 14 14 8.2411 -0.6537 -1.5708 15 1 8.7758 0.7267 -1.4524 16 1 9.3019 -1.5523 -2.0928 17 1 7.0852 -0.6586 -2.5029 18 6 6.3320 1.1531 -0.6688 19 6 5.6098 2.4206 -0.2894 20 8 6.2208 3.4673 -0.2402 21 7 4.2936 2.4040 -0.0047 22 1 -0.3632 0.0044 1.0277 23 1 -0.3634 0.8878 -0.5176 24 1 -0.3633 -0.8921 -0.5099 25 1 1.6522 2.1344 -0.0004 26 1 4.1127 -2.1487 -0.0041 27 1 1.2562 -2.8130 1.0416 28 1 0.4791 -2.3669 -0.4964 29 1 2.0156 -3.2654 -0.5034 30 1 9.4265 -2.0990 0.5721 31 1 7.3680 1.2099 -0.3350 32 1 6.3041 1.0262 -1.7511 33 1 3.8368 3.2340 0.2035 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211388413.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:11 Heat of formation + Delta-G solvation = -14.779255 kcal Electronic energy + Delta-G solvation = -17856.794645 eV Core-core repulsion = 15074.640805 eV Total energy + Delta-G solvation = -2782.153840 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.00639 -39.89556 -37.94208 -36.43935 -34.20597 -32.63662 -32.26083 -29.40059 -28.17570 -27.19138 -24.77374 -23.14430 -22.94122 -20.32512 -19.40154 -18.85683 -18.21970 -17.26219 -17.15579 -16.13021 -15.89627 -15.51752 -15.07121 -14.92932 -14.85513 -14.54647 -14.25839 -13.72020 -13.60394 -13.39864 -13.01403 -12.82999 -12.66041 -12.44499 -12.03250 -11.92024 -11.78190 -11.75178 -11.25968 -11.02353 -10.35391 -9.15446 -8.54609 -8.34320 -5.88560 0.35616 0.67126 1.18863 1.28198 1.33890 1.37136 1.99592 2.12032 2.49062 2.80998 3.05114 3.30658 3.89654 3.99712 4.09271 4.18083 4.43663 4.49160 4.54079 4.78491 4.90475 4.98187 5.12308 5.14591 5.17577 5.32474 5.38174 5.42248 5.63181 5.83207 5.85156 5.96172 6.02541 6.23483 6.53513 6.88321 7.13026 7.42945 8.62021 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.022526 B = 0.009420 C = 0.007157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.733930 B = 2971.718954 C = 3911.343765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.133 4.133 3 C -0.095 4.095 4 C 0.040 3.960 5 C 0.150 3.850 6 C -0.169 4.169 7 C -0.064 4.064 8 C -0.110 4.110 9 N -0.504 5.504 10 C -0.295 4.295 11 H 0.076 0.924 12 C 0.002 3.998 13 N -0.912 5.912 14 Si 0.928 3.072 15 H -0.264 1.264 16 H -0.283 1.283 17 H -0.256 1.256 18 C 0.084 3.916 19 C 0.509 3.491 20 O -0.571 6.571 21 N -0.631 5.631 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.153 0.847 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.278 0.722 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.930 2.778 -4.249 16.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.136 4.136 3 C -0.115 4.115 4 C -0.058 4.058 5 C 0.044 3.956 6 C -0.193 4.193 7 C -0.066 4.066 8 C -0.166 4.166 9 N -0.206 5.206 10 C -0.423 4.423 11 H 0.094 0.906 12 C -0.199 4.199 13 N -0.551 5.551 14 Si 0.753 3.247 15 H -0.190 1.190 16 H -0.210 1.210 17 H -0.180 1.180 18 C -0.043 4.043 19 C 0.296 3.704 20 O -0.451 6.451 21 N -0.276 5.276 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.097 0.903 25 H 0.170 0.830 26 H 0.127 0.873 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -15.043 3.099 -4.222 15.928 hybrid contribution 1.170 0.276 -0.295 1.238 sum -13.873 3.374 -4.518 14.975 Atomic orbital electron populations 1.20729 0.88594 1.03511 1.02674 1.19602 0.97350 0.90893 1.05785 1.20568 0.89289 0.99695 1.01979 1.17625 0.92346 0.83171 1.12706 1.17998 0.83159 0.93487 1.00936 1.20477 0.94149 0.95643 1.08993 1.19838 0.91758 0.96669 0.98311 1.20859 1.00215 0.92685 1.02851 1.42321 1.01548 1.18525 1.58161 1.18793 0.96594 1.11717 1.15147 0.90601 1.25867 0.95934 0.97253 1.00851 1.69881 1.06381 1.41795 1.37003 0.86256 0.78829 0.78370 0.81234 1.18952 1.20958 1.17989 1.22171 0.98391 0.84316 0.99411 1.21147 0.82424 0.90247 0.76557 1.90687 1.66424 1.33347 1.54618 1.43144 1.08441 1.09723 1.66247 0.90920 0.90811 0.90336 0.82985 0.87301 0.90596 0.88930 0.92211 0.91223 0.88182 0.89579 0.74126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 9.59 71.24 0.68 -0.97 16 2 C -0.13 -3.44 5.88 -19.82 -0.12 -3.56 16 3 C -0.09 -2.59 9.58 22.36 0.21 -2.38 16 4 C 0.04 1.43 6.59 38.33 0.25 1.68 16 5 C 0.15 6.38 6.16 38.37 0.24 6.62 16 6 C -0.17 -6.58 9.00 22.36 0.20 -6.38 16 7 C -0.06 -1.93 5.88 -19.83 -0.12 -2.04 16 8 C -0.11 -2.45 9.60 71.24 0.68 -1.76 16 9 N -0.50 -24.35 2.82 -514.06 -1.45 -25.80 16 10 C -0.30 -16.20 9.17 84.04 0.77 -15.43 16 11 H 0.08 4.53 7.92 -2.91 -0.02 4.51 16 12 C 0.00 0.12 5.25 84.85 0.45 0.56 16 13 N -0.91 -53.20 13.97 21.64 0.30 -52.90 16 14 Si 0.93 42.72 24.13 68.60 1.66 44.37 16 15 H -0.26 -11.71 6.47 99.48 0.64 -11.06 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.26 -11.30 6.61 99.48 0.66 -10.64 16 18 C 0.08 3.80 4.29 85.54 0.37 4.16 16 19 C 0.51 21.41 7.90 87.68 0.69 22.10 16 20 O -0.57 -26.08 17.91 -3.08 -0.06 -26.14 16 21 N -0.63 -22.03 5.38 -303.19 -1.63 -23.66 16 22 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 24 H 0.08 1.11 5.91 -2.39 -0.01 1.10 16 25 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 26 H 0.11 4.61 7.49 -2.91 -0.02 4.59 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.09 1.54 5.91 -2.39 -0.01 1.53 16 29 H 0.06 1.37 8.08 -2.39 -0.02 1.35 16 30 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.10 4.83 5.15 -2.39 -0.01 4.82 16 32 H 0.09 3.66 6.28 -2.39 -0.01 3.65 16 33 H 0.42 11.71 8.83 -92.71 -0.82 10.89 16 Total: -1.00 -65.21 269.60 3.35 -61.85 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.22 Total: 19.67 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 4.31 Total: 2.60 kcal Atomic # 7 Polarization: -99.58 SS G_CDS: -2.78 Total: -102.36 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.06 Total: -26.14 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.66 Total: 44.37 kcal Total: -65.21 3.35 -61.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211388413.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.074 kcal (2) G-P(sol) polarization free energy of solvation -65.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds