Wall clock time and date at job start Mon Mar 30 2020 04:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47217 * 2 1 4 4 N 1.46498 * 109.46893 * 119.99975 * 2 1 3 5 5 C 1.38715 * 125.73034 * 120.00095 * 4 2 1 6 6 C 1.39327 * 133.04931 * 359.71268 * 5 4 2 7 7 C 1.36311 * 120.27619 * 179.86803 * 6 5 4 8 8 C 1.40975 * 120.18419 * 0.44703 * 7 6 5 9 9 C 1.41210 * 120.11112 * 179.75196 * 8 7 6 10 10 H 1.07999 * 119.99661 * 155.04433 * 9 8 7 11 11 C 1.39867 * 120.00386 * 335.03704 * 9 8 7 12 12 N 1.30889 * 120.00320 * 342.11008 * 11 9 8 13 13 Si 1.86802 * 120.00279 * 162.11149 * 11 9 8 14 14 H 1.48498 * 109.47105 * 94.64799 * 13 11 9 15 15 H 1.48501 * 109.47288 * 214.65238 * 13 11 9 16 16 H 1.48505 * 109.46725 * 334.64937 * 13 11 9 17 17 C 1.40714 * 119.77051 * 359.77776 * 8 7 6 18 18 C 1.37920 * 119.51362 * 359.97438 * 17 8 7 19 19 N 1.39342 * 133.25748 * 179.97438 * 18 17 8 20 20 H 0.97001 * 125.88433 * 0.03587 * 19 18 17 21 21 C 1.34584 * 125.72565 * 299.99709 * 4 2 1 22 22 O 1.21673 * 125.10869 * 0.02583 * 21 4 2 23 23 H 1.08993 * 109.47479 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47582 * 300.00380 * 1 2 3 25 25 H 1.09008 * 109.46871 * 60.00309 * 1 2 3 26 26 H 1.08997 * 109.46858 * 239.99667 * 2 1 3 27 27 H 1.08998 * 109.47273 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47119 * 299.99741 * 3 2 1 29 29 H 1.09000 * 109.47041 * 59.99786 * 3 2 1 30 30 H 1.07995 * 119.86513 * 0.31195 * 6 5 4 31 31 H 1.07998 * 119.90993 * 180.22011 * 7 6 5 32 32 H 0.97002 * 120.00401 * 179.97438 * 12 11 9 33 33 H 1.07994 * 120.24385 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8191 -1.8232 1.2075 6 6 3.3688 -2.6094 0.1971 7 6 4.1384 -3.6904 0.5093 8 6 4.3756 -4.0258 1.8579 9 6 5.1687 -5.1490 2.1795 10 1 5.6830 -5.1930 3.1281 11 6 5.2879 -6.2047 1.2697 12 7 4.4201 -6.3327 0.2983 13 14 6.6857 -7.4320 1.4410 14 1 6.2181 -8.6099 2.2149 15 1 7.1284 -7.8694 0.0927 16 1 7.8219 -6.7921 2.1516 17 6 3.8189 -3.2379 2.8822 18 6 3.0462 -2.1436 2.5539 19 7 2.3714 -1.1891 3.3122 20 1 2.3429 -1.1489 4.2810 21 6 1.7652 -0.3326 2.4686 22 8 1.0899 0.6217 2.8060 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1905 -2.3573 -0.8377 31 1 4.5645 -4.2937 -0.2786 32 1 4.5031 -7.0646 -0.3329 33 1 3.9953 -3.4881 3.9178 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215780518.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:58 Heat of formation + Delta-G solvation = 4.808713 kcal Electronic energy + Delta-G solvation = -17587.568628 eV Core-core repulsion = 14806.264187 eV Total energy + Delta-G solvation = -2781.304442 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.42574 -37.32347 -35.75995 -35.26598 -33.07512 -31.44720 -29.25269 -27.99484 -26.99586 -24.90029 -23.13263 -21.27461 -20.93381 -19.23911 -17.87356 -17.12551 -15.73893 -15.46916 -15.38332 -15.09777 -14.53872 -13.88044 -13.20252 -13.10452 -13.02040 -12.73361 -12.31389 -12.09080 -11.83389 -11.55462 -11.22885 -11.21094 -11.10904 -11.02010 -10.78674 -10.35276 -9.95106 -9.66364 -9.59080 -9.53231 -8.93712 -7.35362 -6.89443 -6.83670 -4.43087 2.55382 2.74004 3.01755 3.03965 3.10315 3.14433 3.72806 3.83783 4.29353 4.44782 5.02437 5.29812 5.38057 5.50119 5.67611 5.76485 5.84923 5.95228 6.04790 6.24566 6.38018 6.44496 6.54102 6.61242 6.73529 6.93708 7.03782 7.25567 7.44104 7.50556 7.82575 7.92297 7.97032 8.22808 8.44839 8.73529 8.77674 9.08818 10.04674 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.042786 B = 0.005864 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.262687 B = 4773.465697 C = 5177.232558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.163 3.837 3 C -0.165 4.165 4 N -0.524 5.524 5 C -0.039 4.039 6 C -0.087 4.087 7 C -0.141 4.141 8 C 0.124 3.876 9 C -0.455 4.455 10 H 0.081 0.919 11 C 0.077 3.923 12 N -0.790 5.790 13 Si 0.909 3.091 14 H -0.270 1.270 15 H -0.275 1.275 16 H -0.259 1.259 17 C -0.229 4.229 18 C 0.119 3.881 19 N -0.652 5.652 20 H 0.421 0.579 21 C 0.672 3.328 22 O -0.597 6.597 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.128 0.872 32 H 0.283 0.717 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.198 4.596 -2.326 5.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.060 3.940 3 C -0.223 4.223 4 N -0.247 5.247 5 C -0.136 4.136 6 C -0.108 4.108 7 C -0.161 4.161 8 C 0.120 3.880 9 C -0.484 4.484 10 H 0.099 0.901 11 C -0.142 4.142 12 N -0.415 5.415 13 Si 0.734 3.266 14 H -0.195 1.195 15 H -0.200 1.200 16 H -0.183 1.183 17 C -0.253 4.253 18 C 0.019 3.981 19 N -0.296 5.296 20 H 0.260 0.740 21 C 0.374 3.626 22 O -0.478 6.478 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.146 0.854 32 H 0.094 0.906 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.758 5.132 -2.498 5.972 hybrid contribution 0.532 -0.725 0.462 1.011 sum -1.226 4.406 -2.036 5.006 Atomic orbital electron populations 1.22178 0.94776 1.02508 1.02929 1.20854 0.94344 0.92847 0.85980 1.22176 1.01466 0.95752 1.02946 1.44621 1.48192 1.26687 1.05231 1.17658 1.07442 0.94414 0.94085 1.19435 1.00270 0.95897 0.95169 1.20933 1.01519 0.96183 0.97456 1.17303 0.89226 0.91067 0.90435 1.19486 1.25369 1.00671 1.02874 0.90099 1.25915 0.95749 0.98572 0.93961 1.69832 1.30320 1.28609 1.12759 0.86274 0.81594 0.80042 0.78733 1.19523 1.19967 1.18325 1.19879 1.07791 0.98951 0.98663 1.17857 0.98864 0.93154 0.88262 1.42918 1.50117 1.27754 1.08817 0.74004 1.15861 0.82394 0.83362 0.81012 1.90898 1.46410 1.30812 1.79724 0.92378 0.90958 0.91630 0.89127 0.92427 0.91632 0.90955 0.88592 0.85426 0.90634 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 9.22 37.16 0.34 -2.10 16 2 C 0.16 2.63 3.48 -67.93 -0.24 2.39 16 3 C -0.17 -2.40 9.22 37.16 0.34 -2.06 16 4 N -0.52 -10.43 2.64 -111.59 -0.30 -10.73 16 5 C -0.04 -0.84 6.84 -83.59 -0.57 -1.41 16 6 C -0.09 -1.87 9.76 -39.87 -0.39 -2.26 16 7 C -0.14 -3.32 8.62 -39.24 -0.34 -3.66 16 8 C 0.12 3.03 5.57 -106.80 -0.59 2.43 16 9 C -0.45 -11.08 9.03 -37.84 -0.34 -11.43 16 10 H 0.08 1.89 7.91 -52.49 -0.41 1.48 16 11 C 0.08 1.77 5.13 -17.34 -0.09 1.68 16 12 N -0.79 -18.85 10.98 55.54 0.61 -18.24 16 13 Si 0.91 17.31 29.60 -169.99 -5.03 12.28 16 14 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 15 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 16 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 17 C -0.23 -5.25 9.81 -38.76 -0.38 -5.63 16 18 C 0.12 2.61 7.24 -83.81 -0.61 2.00 16 19 N -0.65 -12.96 6.16 -14.32 -0.09 -13.05 16 20 H 0.42 7.06 8.96 -40.82 -0.37 6.69 16 21 C 0.67 14.15 8.23 -87.22 -0.72 13.44 16 22 O -0.60 -13.33 15.48 5.21 0.08 -13.25 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.07 1.20 6.93 -51.93 -0.36 0.84 16 25 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 26 H 0.09 1.35 7.41 -51.93 -0.38 0.96 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.19 6.93 -51.93 -0.36 0.83 16 30 H 0.10 1.82 7.60 -52.49 -0.40 1.42 16 31 H 0.13 3.07 6.17 -52.49 -0.32 2.75 16 32 H 0.28 6.12 8.30 -40.82 -0.34 5.78 16 33 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 279.16 15.07 4.21 4.21 Total: -1.00 -27.35 279.16 -7.95 -35.31 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -3.86 Total: 10.07 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -3.58 Total: -6.60 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.23 Total: -42.01 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.25 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.35 -7.95 -35.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215780518.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.116 kcal (2) G-P(sol) polarization free energy of solvation -27.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds