Wall clock time and date at job start Mon Mar 30 2020 04:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47217 * 2 1 4 4 N 1.46498 * 109.46893 * 119.99975 * 2 1 3 5 5 C 1.38715 * 125.73034 * 120.00095 * 4 2 1 6 6 C 1.39327 * 133.04931 * 359.71268 * 5 4 2 7 7 C 1.36311 * 120.27619 * 179.86803 * 6 5 4 8 8 C 1.40975 * 120.18419 * 0.44703 * 7 6 5 9 9 C 1.41210 * 120.11112 * 179.75196 * 8 7 6 10 10 H 1.07999 * 119.99661 * 155.04433 * 9 8 7 11 11 C 1.39867 * 120.00386 * 335.03704 * 9 8 7 12 12 N 1.30889 * 120.00320 * 342.11008 * 11 9 8 13 13 Si 1.86802 * 120.00279 * 162.11149 * 11 9 8 14 14 H 1.48498 * 109.47105 * 94.64799 * 13 11 9 15 15 H 1.48501 * 109.47288 * 214.65238 * 13 11 9 16 16 H 1.48505 * 109.46725 * 334.64937 * 13 11 9 17 17 C 1.40714 * 119.77051 * 359.77776 * 8 7 6 18 18 C 1.37920 * 119.51362 * 359.97438 * 17 8 7 19 19 N 1.39342 * 133.25748 * 179.97438 * 18 17 8 20 20 H 0.97001 * 125.88433 * 0.03587 * 19 18 17 21 21 C 1.34584 * 125.72565 * 299.99709 * 4 2 1 22 22 O 1.21673 * 125.10869 * 0.02583 * 21 4 2 23 23 H 1.08993 * 109.47479 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47582 * 300.00380 * 1 2 3 25 25 H 1.09008 * 109.46871 * 60.00309 * 1 2 3 26 26 H 1.08997 * 109.46858 * 239.99667 * 2 1 3 27 27 H 1.08998 * 109.47273 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47119 * 299.99741 * 3 2 1 29 29 H 1.09000 * 109.47041 * 59.99786 * 3 2 1 30 30 H 1.07995 * 119.86513 * 0.31195 * 6 5 4 31 31 H 1.07998 * 119.90993 * 180.22011 * 7 6 5 32 32 H 0.97002 * 120.00401 * 179.97438 * 12 11 9 33 33 H 1.07994 * 120.24385 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8191 -1.8232 1.2075 6 6 3.3688 -2.6094 0.1971 7 6 4.1384 -3.6904 0.5093 8 6 4.3756 -4.0258 1.8579 9 6 5.1687 -5.1490 2.1795 10 1 5.6830 -5.1930 3.1281 11 6 5.2879 -6.2047 1.2697 12 7 4.4201 -6.3327 0.2983 13 14 6.6857 -7.4320 1.4410 14 1 6.2181 -8.6099 2.2149 15 1 7.1284 -7.8694 0.0927 16 1 7.8219 -6.7921 2.1516 17 6 3.8189 -3.2379 2.8822 18 6 3.0462 -2.1436 2.5539 19 7 2.3714 -1.1891 3.3122 20 1 2.3429 -1.1489 4.2810 21 6 1.7652 -0.3326 2.4686 22 8 1.0899 0.6217 2.8060 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1905 -2.3573 -0.8377 31 1 4.5645 -4.2937 -0.2786 32 1 4.5031 -7.0646 -0.3329 33 1 3.9953 -3.4881 3.9178 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215780518.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:58 Heat of formation + Delta-G solvation = -10.009775 kcal Electronic energy + Delta-G solvation = -17588.211206 eV Core-core repulsion = 14806.264187 eV Total energy + Delta-G solvation = -2781.947019 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.07107 -39.04282 -37.23009 -36.93852 -34.81988 -32.96681 -30.95809 -29.74828 -28.15246 -26.65386 -24.60719 -23.00504 -22.65525 -20.70614 -19.60045 -18.77562 -17.46828 -17.12456 -17.06149 -16.55309 -16.12454 -15.25054 -14.92647 -14.64545 -14.38898 -14.37609 -13.83150 -13.62197 -13.18924 -13.02626 -12.80394 -12.67304 -12.61718 -12.43744 -12.27176 -11.93525 -11.56853 -11.38447 -11.25037 -11.15332 -10.64299 -9.08406 -8.63024 -8.57494 -6.25054 0.81635 0.99451 1.46500 1.53072 1.60201 1.63651 2.06724 2.25402 2.67046 2.70668 3.67430 3.76312 4.01548 4.10024 4.24887 4.46414 4.55711 4.70698 4.84508 4.86478 4.87252 4.95396 5.00055 5.18201 5.25517 5.27068 5.35308 5.56188 5.72206 5.81643 6.03886 6.19340 6.28510 6.49575 6.67574 6.94074 6.99477 7.46425 8.34203 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.042786 B = 0.005864 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.262687 B = 4773.465697 C = 5177.232558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.147 3.853 3 C -0.157 4.157 4 N -0.521 5.521 5 C -0.042 4.042 6 C -0.081 4.081 7 C -0.157 4.157 8 C 0.098 3.902 9 C -0.486 4.486 10 H 0.080 0.920 11 C 0.041 3.959 12 N -0.818 5.818 13 Si 0.980 3.020 14 H -0.266 1.266 15 H -0.266 1.266 16 H -0.259 1.259 17 C -0.239 4.239 18 C 0.111 3.889 19 N -0.643 5.643 20 H 0.433 0.567 21 C 0.663 3.337 22 O -0.611 6.611 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.051 0.949 28 H 0.102 0.898 29 H 0.049 0.951 30 H 0.124 0.876 31 H 0.119 0.881 32 H 0.291 0.709 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.128 4.812 -3.370 5.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 C -0.215 4.215 4 N -0.244 5.244 5 C -0.140 4.140 6 C -0.101 4.101 7 C -0.177 4.177 8 C 0.094 3.906 9 C -0.516 4.516 10 H 0.098 0.902 11 C -0.175 4.175 12 N -0.444 5.444 13 Si 0.801 3.199 14 H -0.191 1.191 15 H -0.191 1.191 16 H -0.183 1.183 17 C -0.262 4.262 18 C 0.010 3.990 19 N -0.288 5.288 20 H 0.274 0.726 21 C 0.365 3.635 22 O -0.494 6.494 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.121 0.879 26 H 0.126 0.874 27 H 0.071 0.929 28 H 0.121 0.879 29 H 0.068 0.932 30 H 0.142 0.858 31 H 0.137 0.863 32 H 0.102 0.898 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.707 5.372 -3.539 6.655 hybrid contribution 0.432 -0.709 0.777 1.137 sum -1.276 4.663 -2.761 5.567 Atomic orbital electron populations 1.22123 0.93620 1.02172 1.03662 1.21334 0.95368 0.93685 0.85057 1.22115 1.01068 0.94636 1.03640 1.44894 1.47438 1.26069 1.05988 1.17839 1.07239 0.94838 0.94084 1.19612 0.99065 0.94889 0.96570 1.20908 1.02727 0.97098 0.96968 1.17628 0.89930 0.91761 0.91300 1.19728 1.26524 1.01630 1.03683 0.90207 1.26668 0.97623 0.99921 0.93301 1.69863 1.31514 1.29572 1.13411 0.85218 0.78270 0.77504 0.78920 1.19114 1.19068 1.18308 1.19965 1.08088 0.99297 0.98861 1.17937 0.98787 0.93210 0.89076 1.42897 1.49419 1.26973 1.09545 0.72590 1.16024 0.82527 0.83395 0.81533 1.90887 1.47093 1.31399 1.80027 0.93221 0.93143 0.87911 0.87368 0.92944 0.87949 0.93169 0.85833 0.86311 0.89838 0.87411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.29 9.22 71.98 0.66 -3.62 16 2 C 0.15 4.39 3.48 44.99 0.16 4.55 16 3 C -0.16 -4.16 9.22 71.98 0.66 -3.50 16 4 N -0.52 -20.06 2.64 -625.30 -1.65 -21.71 16 5 C -0.04 -1.78 6.84 38.81 0.27 -1.51 16 6 C -0.08 -3.40 9.76 22.08 0.22 -3.18 16 7 C -0.16 -7.43 8.62 22.49 0.19 -7.24 16 8 C 0.10 4.85 5.57 -21.27 -0.12 4.73 16 9 C -0.49 -24.07 9.03 23.39 0.21 -23.86 16 10 H 0.08 3.81 7.91 -2.91 -0.02 3.79 16 11 C 0.04 1.89 5.13 85.23 0.44 2.33 16 12 N -0.82 -39.09 10.98 21.81 0.24 -38.85 16 13 Si 0.98 35.15 29.60 68.60 2.03 37.18 16 14 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 15 H -0.27 -9.10 7.11 99.48 0.71 -8.40 16 16 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 17 C -0.24 -11.03 9.81 22.80 0.22 -10.80 16 18 C 0.11 4.84 7.24 38.36 0.28 5.12 16 19 N -0.64 -25.23 6.16 -317.54 -1.96 -27.19 16 20 H 0.43 14.31 8.96 -92.71 -0.83 13.48 16 21 C 0.66 27.43 8.23 179.16 1.47 28.91 16 22 O -0.61 -26.91 15.48 -4.26 -0.07 -26.98 16 23 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.05 1.60 6.93 -2.39 -0.02 1.58 16 25 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 26 H 0.11 2.87 7.41 -2.39 -0.02 2.85 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.05 1.56 6.93 -2.39 -0.02 1.55 16 30 H 0.12 4.42 7.60 -2.91 -0.02 4.39 16 31 H 0.12 5.78 6.17 -2.91 -0.02 5.77 16 32 H 0.29 12.51 8.30 -92.71 -0.77 11.74 16 33 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -58.20 279.16 3.56 -54.64 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.31 Total: 30.99 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 4.66 Total: -8.08 kcal Atomic # 7 Polarization: -84.38 SS G_CDS: -3.37 Total: -87.75 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.07 Total: -26.98 kcal Atomic # 14 Polarization: 35.15 SS G_CDS: 2.03 Total: 37.18 kcal Total: -58.20 3.56 -54.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215780518.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.628 kcal (2) G-P(sol) polarization free energy of solvation -58.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds