Wall clock time and date at job start Mon Mar 30 2020 03:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.55665 * 2 1 4 4 N 1.47023 * 109.55902 * 120.21253 * 2 1 3 5 5 C 1.40167 * 118.01165 * 161.14822 * 4 2 1 6 6 C 1.37593 * 120.78170 * 152.13442 * 5 4 2 7 7 C 1.40898 * 119.46007 * 178.72364 * 6 5 4 8 8 C 1.41136 * 120.16995 * 180.11428 * 7 6 5 9 9 H 1.08006 * 119.99879 * 204.70952 * 8 7 6 10 10 C 1.39873 * 120.00001 * 24.71170 * 8 7 6 11 11 N 1.30886 * 120.00435 * 17.80420 * 10 8 7 12 12 Si 1.86806 * 119.99880 * 197.80723 * 10 8 7 13 13 H 1.48502 * 109.47027 * 59.99369 * 12 10 8 14 14 H 1.48497 * 109.47290 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46823 * 299.99981 * 12 10 8 16 16 C 1.40915 * 119.65997 * 0.38498 * 7 6 5 17 17 C 1.36430 * 120.23719 * 359.84045 * 16 7 6 18 18 C 1.39250 * 120.34942 * 0.19437 * 17 16 7 19 19 N 1.39210 * 120.45480 * 180.02562 * 18 17 16 20 20 C 1.34490 * 121.04078 * 189.74111 * 19 18 17 21 21 O 1.21283 * 119.60482 * 186.54766 * 20 19 18 22 22 H 1.08994 * 109.47330 * 299.78342 * 1 2 3 23 23 H 1.09000 * 109.47329 * 59.79122 * 1 2 3 24 24 H 1.09008 * 109.47070 * 179.78709 * 1 2 3 25 25 H 1.09004 * 109.47497 * 180.21028 * 3 2 1 26 26 H 1.08996 * 109.47431 * 300.21443 * 3 2 1 27 27 H 1.09004 * 109.47167 * 60.21436 * 3 2 1 28 28 H 0.96992 * 120.99816 * 341.13484 * 4 2 1 29 29 H 1.08003 * 120.26925 * 359.02392 * 6 5 4 30 30 H 0.96992 * 120.00231 * 180.02562 * 11 10 8 31 31 H 1.07997 * 119.88316 * 180.11418 * 16 7 6 32 32 H 1.07996 * 119.82563 * 180.17037 * 17 16 7 33 33 H 0.96996 * 119.48206 * 9.74253 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4417 0.0000 4 7 2.0222 -0.6971 1.1972 5 6 3.3461 -1.1575 1.1933 6 6 4.0506 -1.2856 2.3682 7 6 5.3708 -1.7767 2.3346 8 6 6.1063 -1.9164 3.5310 9 1 7.1859 -1.8987 3.5064 10 6 5.4370 -2.0778 4.7486 11 7 4.1810 -2.4457 4.7613 12 14 6.3359 -1.7681 6.3566 13 1 6.8143 -0.3627 6.3936 14 1 5.4115 -2.0060 7.4942 15 1 7.4964 -2.6888 6.4602 16 6 5.9550 -2.1223 1.0997 17 6 5.2460 -1.9857 -0.0579 18 6 3.9412 -1.5002 -0.0307 19 7 3.2156 -1.3604 -1.2106 20 6 2.0349 -0.7165 -1.2265 21 8 1.3684 -0.7123 -2.2397 22 1 -0.3634 0.5104 0.8919 23 1 -0.3634 0.5171 -0.8881 24 1 -0.3634 -1.0277 -0.0038 25 1 3.1321 1.4401 -0.0038 26 1 1.6764 1.9572 -0.8880 27 1 1.6827 1.9550 0.8919 28 1 1.4481 -0.8342 1.9669 29 1 3.5936 -1.0164 3.3090 30 1 3.7169 -2.5573 5.6056 31 1 6.9660 -2.5008 1.0699 32 1 5.6993 -2.2552 -1.0004 33 1 3.5671 -1.7332 -2.0341 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215783388.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:10 Heat of formation + Delta-G solvation = -17.645725 kcal Electronic energy + Delta-G solvation = -17779.045328 eV Core-core repulsion = 14996.767189 eV Total energy + Delta-G solvation = -2782.278139 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.28356 -37.63910 -35.70585 -34.70871 -32.95987 -31.44742 -29.01881 -27.36313 -26.98528 -25.05965 -23.42132 -21.34944 -21.04407 -18.07970 -17.58123 -16.76884 -16.68698 -15.71275 -14.97235 -14.89336 -14.22271 -13.97678 -13.25381 -13.12964 -12.67152 -12.35899 -12.15445 -12.13602 -11.81419 -11.76283 -11.67874 -11.16629 -11.10957 -11.09831 -10.75004 -10.08219 -9.84060 -9.70454 -9.59562 -9.10099 -8.77671 -7.18631 -6.91998 -6.36877 -4.38578 2.44456 2.92582 2.99250 3.02289 3.05553 3.36711 3.76965 3.86471 4.14262 4.53401 4.90277 5.18772 5.27254 5.57101 5.77163 5.85164 5.94330 5.97269 6.01406 6.22559 6.42030 6.43676 6.66861 6.90506 7.06276 7.12840 7.20485 7.45961 7.60517 7.76426 7.95789 8.05340 8.28220 8.42064 8.60196 8.70986 8.80245 8.92622 10.08586 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.034398 B = 0.006739 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.811578 B = 4153.819278 C = 4674.408323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.175 3.825 3 C -0.154 4.154 4 N -0.755 5.755 5 C 0.191 3.809 6 C -0.195 4.195 7 C 0.126 3.874 8 C -0.454 4.454 9 H 0.080 0.920 10 C 0.077 3.923 11 N -0.787 5.787 12 Si 0.908 3.092 13 H -0.263 1.263 14 H -0.279 1.279 15 H -0.265 1.265 16 C -0.226 4.226 17 C -0.085 4.085 18 C -0.049 4.049 19 N -0.630 5.630 20 C 0.505 3.495 21 O -0.566 6.566 22 H 0.065 0.935 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.400 0.600 29 H 0.126 0.874 30 H 0.281 0.719 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.901 3.928 -2.180 5.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.084 3.916 3 C -0.213 4.213 4 N -0.395 5.395 5 C 0.092 3.908 6 C -0.219 4.219 7 C 0.122 3.878 8 C -0.484 4.484 9 H 0.098 0.902 10 C -0.142 4.142 11 N -0.412 5.412 12 Si 0.732 3.268 13 H -0.188 1.188 14 H -0.204 1.204 15 H -0.190 1.190 16 C -0.247 4.247 17 C -0.105 4.105 18 C -0.145 4.145 19 N -0.271 5.271 20 C 0.291 3.709 21 O -0.446 6.446 22 H 0.084 0.916 23 H 0.095 0.905 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.236 0.764 29 H 0.144 0.856 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -3.531 3.995 -2.543 5.907 hybrid contribution 0.406 -0.253 0.767 0.904 sum -3.125 3.742 -1.777 5.189 Atomic orbital electron populations 1.21854 0.92141 1.02933 1.02779 1.20212 0.94904 0.92298 0.84203 1.22194 1.02356 0.94605 1.02135 1.44605 1.11279 1.66631 1.16942 1.17326 0.83934 0.97048 0.92484 1.20732 0.96241 1.09696 0.95256 1.17415 0.91341 0.87041 0.92023 1.19506 0.94751 1.43340 0.90773 0.90232 1.25917 0.94844 0.92077 1.01357 1.69841 1.10790 1.31478 1.29108 0.86369 0.80101 0.80202 0.80103 1.18774 1.20350 1.18954 1.20495 1.00222 1.11627 0.92376 1.19756 0.91847 1.01399 0.97524 1.17078 0.94340 1.19275 0.83790 1.42979 1.20329 1.53233 1.10559 1.20793 0.80914 0.79414 0.89771 1.90656 1.56443 1.63171 1.34338 0.91585 0.90491 0.92023 0.91795 0.91980 0.91349 0.76420 0.85645 0.90767 0.88446 0.88760 0.76933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.25 37.16 0.31 -1.67 16 2 C 0.18 2.99 1.12 -132.66 -0.15 2.84 16 3 C -0.15 -2.37 8.68 37.16 0.32 -2.05 16 4 N -0.76 -14.13 5.29 -46.55 -0.25 -14.37 16 5 C 0.19 4.20 6.29 -83.49 -0.53 3.67 16 6 C -0.20 -4.71 8.62 -38.81 -0.33 -5.04 16 7 C 0.13 3.12 5.57 -106.78 -0.60 2.53 16 8 C -0.45 -11.29 9.03 -37.87 -0.34 -11.63 16 9 H 0.08 1.89 7.91 -52.48 -0.41 1.48 16 10 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 11 N -0.79 -19.08 10.96 55.54 0.61 -18.47 16 12 Si 0.91 17.66 29.59 -169.99 -5.03 12.63 16 13 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 14 H -0.28 -5.31 7.11 56.52 0.40 -4.90 16 15 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 16 C -0.23 -5.17 9.72 -39.22 -0.38 -5.55 16 17 C -0.08 -1.78 9.83 -39.86 -0.39 -2.17 16 18 C -0.05 -1.04 6.63 -83.34 -0.55 -1.60 16 19 N -0.63 -12.22 5.34 -9.64 -0.05 -12.27 16 20 C 0.50 9.85 6.86 -11.09 -0.08 9.77 16 21 O -0.57 -11.92 16.97 5.56 0.09 -11.82 16 22 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.08 1.06 7.87 -51.93 -0.41 0.66 16 24 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 25 H 0.06 1.10 8.09 -51.93 -0.42 0.68 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.40 6.92 8.73 -40.82 -0.36 6.56 16 29 H 0.13 3.12 6.17 -52.48 -0.32 2.79 16 30 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 31 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 32 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.40 6.87 8.79 -40.82 -0.36 6.52 16 LS Contribution 279.72 15.07 4.22 4.22 Total: -1.00 -27.08 279.72 -7.17 -34.25 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -3.95 Total: 15.01 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -2.81 Total: -9.17 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.31 Total: -45.12 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.08 -7.17 -34.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215783388.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.609 kcal (2) G-P(sol) polarization free energy of solvation -27.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds