Wall clock time and date at job start Mon Mar 30 2020 03:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.55665 * 2 1 4 4 N 1.47023 * 109.55902 * 120.21253 * 2 1 3 5 5 C 1.40167 * 118.01165 * 161.14822 * 4 2 1 6 6 C 1.37593 * 120.78170 * 152.13442 * 5 4 2 7 7 C 1.40898 * 119.46007 * 178.72364 * 6 5 4 8 8 C 1.41136 * 120.16995 * 180.11428 * 7 6 5 9 9 H 1.08006 * 119.99879 * 204.70952 * 8 7 6 10 10 C 1.39873 * 120.00001 * 24.71170 * 8 7 6 11 11 N 1.30886 * 120.00435 * 17.80420 * 10 8 7 12 12 Si 1.86806 * 119.99880 * 197.80723 * 10 8 7 13 13 H 1.48502 * 109.47027 * 59.99369 * 12 10 8 14 14 H 1.48497 * 109.47290 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46823 * 299.99981 * 12 10 8 16 16 C 1.40915 * 119.65997 * 0.38498 * 7 6 5 17 17 C 1.36430 * 120.23719 * 359.84045 * 16 7 6 18 18 C 1.39250 * 120.34942 * 0.19437 * 17 16 7 19 19 N 1.39210 * 120.45480 * 180.02562 * 18 17 16 20 20 C 1.34490 * 121.04078 * 189.74111 * 19 18 17 21 21 O 1.21283 * 119.60482 * 186.54766 * 20 19 18 22 22 H 1.08994 * 109.47330 * 299.78342 * 1 2 3 23 23 H 1.09000 * 109.47329 * 59.79122 * 1 2 3 24 24 H 1.09008 * 109.47070 * 179.78709 * 1 2 3 25 25 H 1.09004 * 109.47497 * 180.21028 * 3 2 1 26 26 H 1.08996 * 109.47431 * 300.21443 * 3 2 1 27 27 H 1.09004 * 109.47167 * 60.21436 * 3 2 1 28 28 H 0.96992 * 120.99816 * 341.13484 * 4 2 1 29 29 H 1.08003 * 120.26925 * 359.02392 * 6 5 4 30 30 H 0.96992 * 120.00231 * 180.02562 * 11 10 8 31 31 H 1.07997 * 119.88316 * 180.11418 * 16 7 6 32 32 H 1.07996 * 119.82563 * 180.17037 * 17 16 7 33 33 H 0.96996 * 119.48206 * 9.74253 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4417 0.0000 4 7 2.0222 -0.6971 1.1972 5 6 3.3461 -1.1575 1.1933 6 6 4.0506 -1.2856 2.3682 7 6 5.3708 -1.7767 2.3346 8 6 6.1063 -1.9164 3.5310 9 1 7.1859 -1.8987 3.5064 10 6 5.4370 -2.0778 4.7486 11 7 4.1810 -2.4457 4.7613 12 14 6.3359 -1.7681 6.3566 13 1 6.8143 -0.3627 6.3936 14 1 5.4115 -2.0060 7.4942 15 1 7.4964 -2.6888 6.4602 16 6 5.9550 -2.1223 1.0997 17 6 5.2460 -1.9857 -0.0579 18 6 3.9412 -1.5002 -0.0307 19 7 3.2156 -1.3604 -1.2106 20 6 2.0349 -0.7165 -1.2265 21 8 1.3684 -0.7123 -2.2397 22 1 -0.3634 0.5104 0.8919 23 1 -0.3634 0.5171 -0.8881 24 1 -0.3634 -1.0277 -0.0038 25 1 3.1321 1.4401 -0.0038 26 1 1.6764 1.9572 -0.8880 27 1 1.6827 1.9550 0.8919 28 1 1.4481 -0.8342 1.9669 29 1 3.5936 -1.0164 3.3090 30 1 3.7169 -2.5573 5.6056 31 1 6.9660 -2.5008 1.0699 32 1 5.6993 -2.2552 -1.0004 33 1 3.5671 -1.7332 -2.0341 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215783388.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:09 Heat of formation + Delta-G solvation = -34.578841 kcal Electronic energy + Delta-G solvation = -17779.779603 eV Core-core repulsion = 14996.767189 eV Total energy + Delta-G solvation = -2783.012414 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.84389 -39.32441 -37.23332 -36.35515 -34.68038 -32.97294 -30.76799 -28.91491 -28.24949 -26.80984 -24.91548 -23.07862 -22.65318 -19.71730 -19.21999 -18.39035 -18.28169 -17.38225 -16.57937 -16.39981 -15.77299 -15.43758 -14.95711 -14.71699 -14.29563 -13.78993 -13.68081 -13.62999 -13.18658 -13.13401 -13.03518 -12.83394 -12.68376 -12.41152 -12.31327 -11.74767 -11.57443 -11.38730 -11.20507 -10.78559 -10.41901 -8.93407 -8.66677 -8.02724 -6.22378 0.76739 1.19286 1.41702 1.45241 1.53897 1.75265 2.24283 2.26999 2.64911 2.79505 3.45824 3.75203 3.87249 4.01311 4.30026 4.62224 4.68175 4.72053 4.79013 4.82054 5.01845 5.10137 5.13660 5.21196 5.32000 5.45930 5.48558 5.73647 5.94964 6.06298 6.18406 6.35881 6.53291 6.82878 6.90237 7.00277 7.03305 7.27309 8.35603 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.034398 B = 0.006739 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.811578 B = 4153.819278 C = 4674.408323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.169 3.831 3 C -0.148 4.148 4 N -0.750 5.750 5 C 0.189 3.811 6 C -0.214 4.214 7 C 0.097 3.903 8 C -0.490 4.490 9 H 0.078 0.922 10 C 0.039 3.961 11 N -0.816 5.816 12 Si 0.977 3.023 13 H -0.262 1.262 14 H -0.270 1.270 15 H -0.261 1.261 16 C -0.242 4.242 17 C -0.081 4.081 18 C -0.050 4.050 19 N -0.628 5.628 20 C 0.499 3.501 21 O -0.581 6.581 22 H 0.093 0.907 23 H 0.084 0.916 24 H 0.054 0.946 25 H 0.041 0.959 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.406 0.594 29 H 0.111 0.889 30 H 0.288 0.712 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.492 4.598 -2.251 6.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.079 3.921 3 C -0.207 4.207 4 N -0.389 5.389 5 C 0.089 3.911 6 C -0.239 4.239 7 C 0.093 3.907 8 C -0.519 4.519 9 H 0.096 0.904 10 C -0.177 4.177 11 N -0.441 5.441 12 Si 0.798 3.202 13 H -0.186 1.186 14 H -0.194 1.194 15 H -0.185 1.185 16 C -0.263 4.263 17 C -0.101 4.101 18 C -0.146 4.146 19 N -0.270 5.270 20 C 0.286 3.714 21 O -0.461 6.461 22 H 0.112 0.888 23 H 0.102 0.898 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.243 0.757 29 H 0.129 0.871 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.144 0.856 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -4.143 4.668 -2.639 6.776 hybrid contribution 0.529 -0.463 0.642 0.952 sum -3.614 4.205 -1.997 5.893 Atomic orbital electron populations 1.21854 0.89625 1.03080 1.04526 1.20503 0.96787 0.92521 0.82280 1.22160 1.00895 0.93710 1.03944 1.44647 1.10099 1.66357 1.17823 1.17401 0.85140 0.96395 0.92164 1.20632 0.96532 1.11233 0.95457 1.17783 0.92119 0.87752 0.93031 1.19753 0.94925 1.45271 0.91924 0.90358 1.26671 0.95543 0.91257 1.04182 1.69889 1.12036 1.31999 1.30221 0.85323 0.78925 0.79899 0.76019 1.18635 1.19444 1.18540 1.20665 1.00907 1.12277 0.92474 1.20042 0.91610 1.00166 0.98305 1.17205 0.94650 1.18524 0.84263 1.42946 1.20336 1.53392 1.10339 1.21302 0.80580 0.79090 0.90406 1.90648 1.56698 1.63659 1.35138 0.88821 0.89759 0.92698 0.93979 0.90292 0.89451 0.75677 0.87076 0.90173 0.87664 0.85615 0.75902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 8.25 71.98 0.59 -2.82 16 2 C 0.17 5.45 1.12 2.77 0.00 5.45 16 3 C -0.15 -4.24 8.68 71.98 0.62 -3.62 16 4 N -0.75 -27.22 5.29 -301.20 -1.59 -28.81 16 5 C 0.19 8.28 6.29 38.17 0.24 8.52 16 6 C -0.21 -10.53 8.62 22.77 0.20 -10.33 16 7 C 0.10 4.92 5.57 -21.26 -0.12 4.81 16 8 C -0.49 -24.92 9.03 23.38 0.21 -24.71 16 9 H 0.08 3.83 7.91 -2.91 -0.02 3.81 16 10 C 0.04 1.88 5.14 85.23 0.44 2.32 16 11 N -0.82 -40.17 10.96 21.82 0.24 -39.93 16 12 Si 0.98 36.27 29.59 68.60 2.03 38.30 16 13 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 14 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 15 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 16 C -0.24 -11.13 9.72 22.50 0.22 -10.91 16 17 C -0.08 -3.32 9.83 22.09 0.22 -3.10 16 18 C -0.05 -2.09 6.63 38.73 0.26 -1.83 16 19 N -0.63 -23.46 5.34 -302.95 -1.62 -25.08 16 20 C 0.50 18.61 6.86 87.72 0.60 19.21 16 21 O -0.58 -23.34 16.97 -3.04 -0.05 -23.39 16 22 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 23 H 0.08 2.07 7.87 -2.39 -0.02 2.05 16 24 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.04 1.38 8.09 -2.39 -0.02 1.36 16 26 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.41 13.62 8.73 -92.71 -0.81 12.81 16 29 H 0.11 5.69 6.17 -2.91 -0.02 5.67 16 30 H 0.29 12.86 8.30 -92.71 -0.77 12.09 16 31 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 32 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 33 H 0.40 13.37 8.79 -92.71 -0.81 12.56 16 Total: -1.00 -57.82 279.72 2.01 -55.81 By element: Atomic # 1 Polarization: 40.60 SS G_CDS: -0.48 Total: 40.12 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 3.48 Total: -17.01 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -2.97 Total: -93.83 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.05 Total: -23.39 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Total: -57.82 2.01 -55.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215783388.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.230 kcal (2) G-P(sol) polarization free energy of solvation -57.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds