Wall clock time and date at job start Mon Mar 30 2020 03:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38357 * 119.90969 * 2 1 4 4 C 1.38037 * 120.08950 * 180.02562 * 3 2 1 5 5 C 1.39101 * 119.90763 * 359.97438 * 4 3 2 6 6 N 1.39299 * 120.08194 * 179.97438 * 5 4 3 7 7 C 1.36846 * 119.99992 * 270.01307 * 6 5 4 8 8 H 1.07998 * 120.00646 * 186.72245 * 7 6 5 9 9 C 1.38799 * 120.00099 * 6.72780 * 7 6 5 10 10 N 1.31592 * 119.99565 * 9.19360 * 9 7 6 11 11 Si 1.86792 * 120.00358 * 189.19599 * 9 7 6 12 12 H 1.48505 * 109.47184 * 89.99768 * 11 9 7 13 13 H 1.48493 * 109.47450 * 209.99783 * 11 9 7 14 14 H 1.48500 * 109.47039 * 329.99982 * 11 9 7 15 15 C 1.46505 * 120.00232 * 90.02502 * 6 5 4 16 16 C 1.47197 * 109.47140 * 95.74731 * 15 6 5 17 17 N 6.34821 * 150.80973 * 142.18597 * 2 1 3 18 18 C 1.39058 * 119.82431 * 359.97438 * 5 4 3 19 19 C 1.50693 * 120.04472 * 180.02562 * 18 5 4 20 20 O 1.42901 * 109.47269 * 180.02562 * 19 18 5 21 21 C 1.38072 * 119.90803 * 0.27455 * 18 5 4 22 22 H 1.08995 * 109.47510 * 89.99854 * 1 2 3 23 23 H 1.08998 * 109.46861 * 210.00534 * 1 2 3 24 24 H 1.08999 * 109.47344 * 329.99735 * 1 2 3 25 25 H 1.07997 * 119.95709 * 359.97438 * 3 2 1 26 26 H 1.07995 * 120.04029 * 179.97438 * 4 3 2 27 27 H 0.97005 * 119.99833 * 179.97438 * 10 9 7 28 28 H 1.08994 * 109.46800 * 215.74990 * 15 6 5 29 29 H 1.08997 * 109.46909 * 335.74796 * 15 6 5 30 30 H 1.08999 * 109.47472 * 59.99881 * 19 18 5 31 31 H 1.09004 * 109.46912 * 300.00021 * 19 18 5 32 32 H 0.96701 * 113.99621 * 59.99829 * 20 19 18 33 33 H 1.08004 * 119.95325 * 179.72146 * 21 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1968 1.1993 0.0000 4 6 3.5772 1.2036 -0.0005 5 6 4.2745 0.0000 -0.0005 6 7 5.6675 0.0002 -0.0016 7 6 6.3508 0.0000 -1.1873 8 1 7.4252 -0.1094 -1.1914 9 6 5.6631 0.1405 -2.3847 10 7 4.3850 0.4538 -2.3764 11 14 6.5516 -0.1153 -4.0077 12 1 6.4539 -1.5426 -4.4060 13 1 5.9269 0.7341 -5.0533 14 1 7.9804 0.2591 -3.8542 15 6 6.4011 0.0003 1.2666 16 6 6.7672 -1.3805 1.6217 17 7 7.0489 -2.4459 1.8982 18 6 3.5774 -1.2032 0.0005 19 6 4.3278 -2.5100 0.0011 20 8 3.3967 -3.5940 0.0016 21 6 2.1967 -1.1988 -0.0041 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3634 0.8899 0.5139 25 1 1.6547 2.1333 -0.0004 26 1 4.1149 2.1402 -0.0010 27 1 3.9044 0.5524 -3.2133 28 1 7.3048 0.6007 1.1634 29 1 5.7719 0.4223 2.0502 30 1 4.9547 -2.5686 0.8909 31 1 4.9540 -2.5697 -0.8891 32 1 2.8054 -3.6048 -0.7634 33 1 1.6545 -2.1329 -0.0078 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235779180.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:35 Heat of formation + Delta-G solvation = 29.200017 kcal Electronic energy + Delta-G solvation = -18101.711862 eV Core-core repulsion = 15321.465107 eV Total energy + Delta-G solvation = -2780.246755 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.99450 -36.44960 -35.97822 -35.01202 -31.70276 -31.11345 -30.09267 -27.23664 -26.04467 -25.27485 -22.77433 -20.84926 -19.79396 -17.73192 -17.12168 -16.36554 -15.63165 -14.68675 -14.59958 -14.16829 -13.97625 -13.44189 -13.32525 -13.05214 -12.92554 -12.60610 -12.36512 -11.92559 -11.62009 -11.36373 -11.25307 -11.02169 -10.95220 -10.73030 -10.54469 -10.18976 -10.14692 -9.98033 -9.57311 -9.05896 -7.67030 -7.46255 -7.31360 -5.74975 -3.52967 2.50697 2.60642 3.24880 3.29691 3.34098 3.40818 3.46339 4.30617 4.77003 4.83862 5.10368 5.14190 5.30405 5.64247 5.72072 5.88323 5.90822 6.07118 6.11503 6.15369 6.28737 6.31642 6.39916 6.49135 6.78114 6.99173 7.22678 7.40395 7.52570 7.61395 7.86156 7.87051 8.17327 8.23397 8.24370 9.02394 9.48617 9.86244 11.02927 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.015781 B = 0.011763 C = 0.009077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.818851 B = 2379.783911 C = 3083.933720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.121 4.121 3 C -0.123 4.123 4 C -0.068 4.068 5 C 0.279 3.721 6 N -0.555 5.555 7 C -0.281 4.281 8 H 0.086 0.914 9 C 0.013 3.987 10 N -0.880 5.880 11 Si 0.909 3.091 12 H -0.287 1.287 13 H -0.289 1.289 14 H -0.278 1.278 15 C 0.232 3.768 16 C 0.197 3.803 17 N -0.468 5.468 18 C -0.141 4.141 19 C 0.128 3.872 20 O -0.577 6.577 21 C -0.115 4.115 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.259 0.741 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.370 0.630 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.851 2.549 3.869 6.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.121 4.121 3 C -0.142 4.142 4 C -0.088 4.088 5 C 0.185 3.815 6 N -0.272 5.272 7 C -0.408 4.408 8 H 0.104 0.896 9 C -0.187 4.187 10 N -0.521 5.521 11 Si 0.739 3.261 12 H -0.214 1.214 13 H -0.215 1.215 14 H -0.203 1.203 15 C 0.101 3.899 16 C -0.123 4.123 17 N -0.147 5.147 18 C -0.144 4.144 19 C 0.050 3.950 20 O -0.381 6.381 21 C -0.134 4.134 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.117 0.883 26 H 0.123 0.877 27 H 0.071 0.929 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.216 0.784 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.203 0.903 4.629 5.701 hybrid contribution 0.044 0.430 -1.977 2.024 sum -3.159 1.333 2.652 4.334 Atomic orbital electron populations 1.20610 0.93045 1.01108 1.00962 1.19412 0.94374 0.93400 1.04911 1.20518 0.94124 0.95963 1.03599 1.21023 0.92988 0.97399 0.97418 1.16564 0.83177 0.90509 0.91246 1.41443 1.00012 1.84625 1.01122 1.19273 0.91823 1.47501 0.82191 0.89649 1.24901 0.96082 0.99609 0.98149 1.69962 1.07445 1.48993 1.25707 0.86179 0.78924 0.77828 0.83216 1.21351 1.21486 1.20298 1.18587 0.98350 0.83867 0.89080 1.31656 0.91878 0.97126 0.91660 1.81049 1.10349 1.13055 1.10273 1.20769 0.93956 0.95749 1.03888 1.21082 0.89609 0.82336 1.01949 1.86436 1.51741 1.50424 1.49537 1.20270 0.93175 0.96444 1.03527 0.92551 0.92850 0.92774 0.88334 0.87709 0.92950 0.88100 0.88823 0.89408 0.92325 0.78381 0.87856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 10.01 36.00 0.36 -1.12 16 2 C -0.12 -2.25 5.88 -104.56 -0.62 -2.86 16 3 C -0.12 -2.35 9.69 -39.61 -0.38 -2.74 16 4 C -0.07 -1.41 8.27 -39.33 -0.33 -1.74 16 5 C 0.28 6.06 2.88 -83.84 -0.24 5.82 16 6 N -0.56 -11.82 1.91 -116.25 -0.22 -12.05 16 7 C -0.28 -6.67 9.75 -15.11 -0.15 -6.82 16 8 H 0.09 1.98 7.84 -52.49 -0.41 1.57 16 9 C 0.01 0.32 5.38 -17.45 -0.09 0.22 16 10 N -0.88 -22.45 9.48 55.49 0.53 -21.93 16 11 Si 0.91 20.34 29.56 -169.99 -5.03 15.31 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 15 C 0.23 3.88 6.15 -6.83 -0.04 3.84 16 16 C 0.20 3.68 13.48 -20.75 -0.28 3.40 16 17 N -0.47 -9.65 17.76 42.16 0.75 -8.90 16 18 C -0.14 -3.03 5.73 -104.38 -0.60 -3.63 16 19 C 0.13 2.77 6.62 36.00 0.24 3.01 16 20 O -0.58 -11.48 12.70 -35.23 -0.45 -11.93 16 21 C -0.12 -2.29 8.86 -39.62 -0.35 -2.64 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 24 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 25 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 26 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 27 H 0.26 6.67 8.31 -40.82 -0.34 6.34 16 28 H 0.10 1.45 8.09 -51.93 -0.42 1.03 16 29 H 0.09 1.32 8.00 -51.93 -0.42 0.91 16 30 H 0.09 1.96 4.98 -51.93 -0.26 1.70 16 31 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 32 H 0.37 6.12 8.11 45.56 0.37 6.49 16 33 H 0.10 1.87 6.59 -52.48 -0.35 1.53 16 LS Contribution 285.93 15.07 4.31 4.31 Total: -1.00 -28.28 285.93 -5.74 -34.02 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -3.15 Total: 6.41 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -2.48 Total: -5.26 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 1.05 Total: -42.87 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -0.45 Total: -11.93 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.28 -5.74 -34.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235779180.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.223 kcal (2) G-P(sol) polarization free energy of solvation -28.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds