Wall clock time and date at job start Mon Mar 30 2020 03:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38357 * 119.90969 * 2 1 4 4 C 1.38037 * 120.08950 * 180.02562 * 3 2 1 5 5 C 1.39101 * 119.90763 * 359.97438 * 4 3 2 6 6 N 1.39299 * 120.08194 * 179.97438 * 5 4 3 7 7 C 1.36846 * 119.99992 * 270.01307 * 6 5 4 8 8 H 1.07998 * 120.00646 * 186.72245 * 7 6 5 9 9 C 1.38799 * 120.00099 * 6.72780 * 7 6 5 10 10 N 1.31592 * 119.99565 * 9.19360 * 9 7 6 11 11 Si 1.86792 * 120.00358 * 189.19599 * 9 7 6 12 12 H 1.48505 * 109.47184 * 89.99768 * 11 9 7 13 13 H 1.48493 * 109.47450 * 209.99783 * 11 9 7 14 14 H 1.48500 * 109.47039 * 329.99982 * 11 9 7 15 15 C 1.46505 * 120.00232 * 90.02502 * 6 5 4 16 16 C 1.47197 * 109.47140 * 95.74731 * 15 6 5 17 17 N 6.34821 * 150.80973 * 142.18597 * 2 1 3 18 18 C 1.39058 * 119.82431 * 359.97438 * 5 4 3 19 19 C 1.50693 * 120.04472 * 180.02562 * 18 5 4 20 20 O 1.42901 * 109.47269 * 180.02562 * 19 18 5 21 21 C 1.38072 * 119.90803 * 0.27455 * 18 5 4 22 22 H 1.08995 * 109.47510 * 89.99854 * 1 2 3 23 23 H 1.08998 * 109.46861 * 210.00534 * 1 2 3 24 24 H 1.08999 * 109.47344 * 329.99735 * 1 2 3 25 25 H 1.07997 * 119.95709 * 359.97438 * 3 2 1 26 26 H 1.07995 * 120.04029 * 179.97438 * 4 3 2 27 27 H 0.97005 * 119.99833 * 179.97438 * 10 9 7 28 28 H 1.08994 * 109.46800 * 215.74990 * 15 6 5 29 29 H 1.08997 * 109.46909 * 335.74796 * 15 6 5 30 30 H 1.08999 * 109.47472 * 59.99881 * 19 18 5 31 31 H 1.09004 * 109.46912 * 300.00021 * 19 18 5 32 32 H 0.96701 * 113.99621 * 59.99829 * 20 19 18 33 33 H 1.08004 * 119.95325 * 179.72146 * 21 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1968 1.1993 0.0000 4 6 3.5772 1.2036 -0.0005 5 6 4.2745 0.0000 -0.0005 6 7 5.6675 0.0002 -0.0016 7 6 6.3508 0.0000 -1.1873 8 1 7.4252 -0.1094 -1.1914 9 6 5.6631 0.1405 -2.3847 10 7 4.3850 0.4538 -2.3764 11 14 6.5516 -0.1153 -4.0077 12 1 6.4539 -1.5426 -4.4060 13 1 5.9269 0.7341 -5.0533 14 1 7.9804 0.2591 -3.8542 15 6 6.4011 0.0003 1.2666 16 6 6.7672 -1.3805 1.6217 17 7 7.0489 -2.4459 1.8982 18 6 3.5774 -1.2032 0.0005 19 6 4.3278 -2.5100 0.0011 20 8 3.3967 -3.5940 0.0016 21 6 2.1967 -1.1988 -0.0041 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3634 0.8899 0.5139 25 1 1.6547 2.1333 -0.0004 26 1 4.1149 2.1402 -0.0010 27 1 3.9044 0.5524 -3.2133 28 1 7.3048 0.6007 1.1634 29 1 5.7719 0.4223 2.0502 30 1 4.9547 -2.5686 0.8909 31 1 4.9540 -2.5697 -0.8891 32 1 2.8054 -3.6048 -0.7634 33 1 1.6545 -2.1329 -0.0078 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235779180.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:35 Heat of formation + Delta-G solvation = 12.697089 kcal Electronic energy + Delta-G solvation = -18102.427483 eV Core-core repulsion = 15321.465107 eV Total energy + Delta-G solvation = -2780.962376 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.55365 -37.99480 -37.57330 -36.59041 -33.46476 -32.55879 -31.63547 -28.73837 -27.57072 -26.93149 -24.37690 -22.42190 -21.35446 -19.40899 -18.64819 -17.96213 -17.22160 -16.40420 -16.18531 -15.80132 -15.56289 -15.03143 -14.86105 -14.53132 -14.23763 -14.15562 -13.87496 -13.49385 -13.02567 -12.98883 -12.78765 -12.78045 -12.41371 -12.38952 -12.06111 -11.88155 -11.72315 -11.60015 -11.22332 -10.81374 -9.27311 -9.15436 -8.89986 -7.54259 -5.35600 0.96222 1.06385 1.46089 1.50950 1.55069 1.84987 1.98632 2.52425 3.21496 3.29137 3.50723 3.57583 3.60264 4.17535 4.35997 4.48218 4.59181 4.61527 4.67270 4.81053 4.86236 4.91023 5.01245 5.18036 5.25212 5.51096 5.61689 5.69853 5.91824 6.11471 6.16132 6.31048 6.58012 6.72594 6.76112 7.22064 7.79915 8.09414 9.15292 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.015781 B = 0.011763 C = 0.009077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.818851 B = 2379.783911 C = 3083.933720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.122 4.122 3 C -0.125 4.125 4 C -0.079 4.079 5 C 0.262 3.738 6 N -0.565 5.565 7 C -0.275 4.275 8 H 0.088 0.912 9 C -0.029 4.029 10 N -0.894 5.894 11 Si 0.953 3.047 12 H -0.301 1.301 13 H -0.296 1.296 14 H -0.269 1.269 15 C 0.228 3.772 16 C 0.214 3.786 17 N -0.505 5.505 18 C -0.160 4.160 19 C 0.142 3.858 20 O -0.578 6.578 21 C -0.124 4.124 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.122 0.878 26 H 0.101 0.899 27 H 0.247 0.753 28 H 0.131 0.869 29 H 0.125 0.875 30 H 0.080 0.920 31 H 0.027 0.973 32 H 0.384 0.616 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.748 3.253 4.461 7.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.144 4.144 4 C -0.099 4.099 5 C 0.169 3.831 6 N -0.282 5.282 7 C -0.403 4.403 8 H 0.106 0.894 9 C -0.227 4.227 10 N -0.537 5.537 11 Si 0.783 3.217 12 H -0.229 1.229 13 H -0.223 1.223 14 H -0.194 1.194 15 C 0.099 3.901 16 C -0.105 4.105 17 N -0.185 5.185 18 C -0.163 4.163 19 C 0.064 3.936 20 O -0.385 6.385 21 C -0.143 4.143 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.140 0.860 26 H 0.119 0.881 27 H 0.058 0.942 28 H 0.148 0.852 29 H 0.142 0.858 30 H 0.097 0.903 31 H 0.045 0.955 32 H 0.233 0.767 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.090 1.607 5.240 6.839 hybrid contribution 0.293 0.200 -2.117 2.147 sum -3.796 1.807 3.123 5.237 Atomic orbital electron populations 1.20642 0.90074 1.02801 1.01856 1.19853 0.96601 0.92637 1.03091 1.20834 0.93720 0.97318 1.02569 1.21080 0.93879 0.96897 0.98074 1.16728 0.83468 0.90885 0.92049 1.41557 1.00265 1.84576 1.01816 1.19483 0.92059 1.45553 0.83213 0.89438 1.25366 0.96693 1.00664 0.99969 1.70126 1.08035 1.50553 1.24977 0.85487 0.78646 0.76480 0.81102 1.22864 1.22274 1.19408 1.19058 0.99844 0.82996 0.88240 1.31941 0.90771 0.97153 0.90635 1.81058 1.11817 1.14110 1.11536 1.20857 0.94864 0.95378 1.05232 1.20763 0.89570 0.83244 0.99974 1.86397 1.51735 1.49888 1.50511 1.20531 0.92722 0.97740 1.03314 0.91904 0.91505 0.90850 0.86046 0.88121 0.94213 0.85184 0.85755 0.90251 0.95451 0.76684 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.53 10.01 71.23 0.71 -1.82 16 2 C -0.12 -4.24 5.88 -19.82 -0.12 -4.35 16 3 C -0.13 -4.54 9.69 22.25 0.22 -4.33 16 4 C -0.08 -3.20 8.27 22.43 0.19 -3.01 16 5 C 0.26 11.19 2.88 38.36 0.11 11.30 16 6 N -0.57 -23.53 1.91 -521.70 -1.00 -24.53 16 7 C -0.28 -12.89 9.75 84.05 0.82 -12.07 16 8 H 0.09 3.98 7.84 -2.91 -0.02 3.95 16 9 C -0.03 -1.43 5.38 84.86 0.46 -0.98 16 10 N -0.89 -45.59 9.48 21.65 0.21 -45.39 16 11 Si 0.95 41.93 29.56 68.60 2.03 43.96 16 12 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 13 H -0.30 -13.26 7.11 99.48 0.71 -12.56 16 14 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 15 C 0.23 7.21 6.15 84.57 0.52 7.73 16 16 C 0.21 7.79 13.48 89.44 1.21 9.00 16 17 N -0.50 -20.64 17.76 20.01 0.36 -20.29 16 18 C -0.16 -6.81 5.73 -19.71 -0.11 -6.92 16 19 C 0.14 6.18 6.62 71.23 0.47 6.65 16 20 O -0.58 -22.65 12.70 -148.98 -1.89 -24.54 16 21 C -0.12 -4.74 8.86 22.25 0.20 -4.54 16 22 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 23 H 0.07 1.56 8.08 -2.39 -0.02 1.54 16 24 H 0.07 1.63 8.08 -2.39 -0.02 1.62 16 25 H 0.12 3.76 8.06 -2.91 -0.02 3.73 16 26 H 0.10 4.07 8.06 -2.91 -0.02 4.04 16 27 H 0.25 12.82 8.31 -92.70 -0.77 12.05 16 28 H 0.13 3.39 8.09 -2.39 -0.02 3.37 16 29 H 0.12 3.20 8.00 -2.39 -0.02 3.18 16 30 H 0.08 3.55 4.98 -2.39 -0.01 3.54 16 31 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.38 12.37 8.11 -74.06 -0.60 11.77 16 33 H 0.12 4.01 6.59 -2.91 -0.02 4.00 16 Total: -1.00 -59.62 285.93 4.90 -54.72 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.53 Total: 19.42 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 4.67 Total: -3.35 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -0.44 Total: -90.20 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -1.89 Total: -24.54 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -59.62 4.90 -54.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235779180.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.418 kcal (2) G-P(sol) polarization free energy of solvation -59.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds