Wall clock time and date at job start Mon Mar 30 2020 03:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29905 * 124.85605 * 2 1 4 4 C 1.36061 * 108.79836 * 179.97438 * 3 2 1 5 5 C 1.39585 * 133.80183 * 180.02562 * 4 3 2 6 6 C 1.37684 * 119.73043 * 179.97438 * 5 4 3 7 7 C 1.50697 * 119.78924 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47466 * 89.99850 * 7 6 5 9 9 N 1.46505 * 109.47212 * 179.97438 * 8 7 6 10 10 C 1.36936 * 119.99992 * 179.97438 * 9 8 7 11 11 H 1.08006 * 119.99834 * 0.02562 * 10 9 8 12 12 C 1.38801 * 120.00093 * 180.02562 * 10 9 8 13 13 N 1.31619 * 120.00176 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00265 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46725 * 59.99976 * 14 12 10 16 16 H 1.48498 * 109.47172 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46920 * 300.00189 * 14 12 10 18 18 C 1.38721 * 120.41824 * 0.25266 * 6 5 4 19 19 C 1.37908 * 120.47898 * 359.51059 * 18 6 5 20 20 C 1.38673 * 119.87127 * 0.46685 * 19 18 6 21 21 O 1.34232 * 124.85297 * 179.97438 * 2 1 3 22 22 H 1.09002 * 109.47143 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46939 * 300.01222 * 1 2 3 24 24 H 1.08994 * 109.47432 * 60.00834 * 1 2 3 25 25 H 1.07998 * 120.13395 * 0.02562 * 5 4 3 26 26 H 1.09002 * 109.47120 * 329.99603 * 7 6 5 27 27 H 1.08998 * 109.46862 * 210.00405 * 7 6 5 28 28 H 1.09002 * 109.47153 * 59.99773 * 8 7 6 29 29 H 1.09001 * 109.46832 * 299.99964 * 8 7 6 30 30 H 0.96996 * 119.99606 * 0.02562 * 9 8 7 31 31 H 0.97001 * 120.00803 * 179.97438 * 13 12 10 32 32 H 1.08006 * 119.75755 * 179.74194 * 18 6 5 33 33 H 1.07992 * 120.06310 * 180.25176 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2494 1.0660 0.0000 4 6 3.5570 0.6896 0.0006 5 6 4.7641 1.3905 0.0013 6 6 5.9549 0.6994 0.0023 7 6 7.2589 1.4548 0.0025 8 6 7.6996 1.7113 1.4450 9 7 8.9676 2.4451 1.4451 10 6 9.5593 2.7894 2.6311 11 1 9.0914 2.5197 3.5664 12 6 10.7604 3.4851 2.6312 13 7 11.3304 3.8143 1.4914 14 14 11.5680 3.9542 4.2490 15 1 11.8649 2.7256 5.0285 16 1 12.8318 4.6853 3.9777 17 1 10.6494 4.8240 5.0268 18 6 5.9619 -0.6878 -0.0027 19 6 4.7770 -1.3933 0.0015 20 6 3.5684 -0.7134 0.0009 21 8 2.2741 -1.1015 0.0005 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 4.7640 2.4705 0.0019 26 1 7.1275 2.4067 -0.5121 27 1 8.0196 0.8665 -0.5107 28 1 7.8310 0.7594 1.9595 29 1 6.9388 2.2997 1.9580 30 1 9.3876 2.6877 0.6051 31 1 12.1696 4.3008 1.4914 32 1 6.9023 -1.2191 -0.0061 33 1 4.7903 -2.4731 0.0016 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258905516.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:36 Heat of formation + Delta-G solvation = 39.524020 kcal Electronic energy + Delta-G solvation = -16476.330124 eV Core-core repulsion = 13696.531051 eV Total energy + Delta-G solvation = -2779.799073 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.27434 -38.52593 -35.14400 -34.83615 -32.71481 -31.52196 -30.59011 -28.78056 -27.06463 -24.10552 -22.53419 -22.28940 -21.60301 -20.97208 -17.79655 -17.26855 -16.92275 -16.84533 -15.44074 -14.69547 -14.31664 -14.19358 -13.69971 -13.60874 -13.41423 -13.28715 -13.05552 -13.00939 -12.38362 -11.87661 -11.49282 -11.41569 -10.97039 -10.96416 -10.75357 -10.66469 -10.46043 -10.09163 -9.70443 -8.85763 -8.53612 -8.45744 -6.91517 -5.75002 -3.04063 0.66348 1.22528 2.34309 2.39650 3.45996 3.49880 3.51221 3.63187 3.67139 4.49080 4.59543 4.74390 4.84298 5.01371 5.02166 5.15990 5.26644 5.34787 5.37701 5.56655 5.75799 5.77178 5.90751 6.04272 6.16942 6.18879 6.23908 6.34857 6.49840 6.68386 6.83150 6.90676 7.54776 7.71374 8.43942 9.54944 10.12076 10.47161 11.47896 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.048212 B = 0.003728 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.627681 B = 7508.212139 C = 7693.817059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.237 3.763 3 N -0.479 5.479 4 C 0.023 3.977 5 C -0.060 4.060 6 C -0.063 4.063 7 C -0.089 4.089 8 C 0.159 3.841 9 N -0.734 5.734 10 C -0.240 4.240 11 H 0.070 0.930 12 C -0.014 4.014 13 N -0.935 5.935 14 Si 0.908 3.092 15 H -0.286 1.286 16 H -0.291 1.291 17 H -0.286 1.286 18 C -0.083 4.083 19 C -0.095 4.095 20 C -0.003 4.003 21 O -0.219 6.219 22 H 0.090 0.910 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.137 0.863 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.021 0.979 29 H 0.021 0.979 30 H 0.384 0.616 31 H 0.256 0.744 32 H 0.143 0.857 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.506 -10.670 -5.424 22.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.025 3.975 3 N -0.210 5.210 4 C -0.088 4.088 5 C -0.079 4.079 6 C -0.065 4.065 7 C -0.127 4.127 8 C 0.032 3.968 9 N -0.378 5.378 10 C -0.371 4.371 11 H 0.088 0.912 12 C -0.210 4.210 13 N -0.583 5.583 14 Si 0.739 3.261 15 H -0.212 1.212 16 H -0.217 1.217 17 H -0.212 1.212 18 C -0.101 4.101 19 C -0.113 4.113 20 C -0.052 4.052 21 O -0.111 6.111 22 H 0.109 0.891 23 H 0.119 0.881 24 H 0.119 0.881 25 H 0.155 0.845 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.039 0.961 29 H 0.038 0.962 30 H 0.218 0.782 31 H 0.066 0.934 32 H 0.161 0.839 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -19.677 -10.037 -5.247 22.704 hybrid contribution 0.835 -0.329 0.644 1.104 sum -18.842 -10.365 -4.603 21.993 Atomic orbital electron populations 1.20361 0.81086 1.04962 1.05403 1.26409 0.96558 0.78484 0.96032 1.70577 1.01190 1.29019 1.20206 1.19798 0.91909 0.91301 1.05768 1.20242 0.88030 1.00436 0.99152 1.19863 0.95083 0.93565 0.97992 1.20830 0.92239 0.99850 0.99778 1.20616 0.89113 0.95143 0.91975 1.42356 1.21990 1.66979 1.06514 1.19193 1.02544 1.29304 0.86107 0.91213 1.24742 0.98038 1.01317 0.96890 1.69648 1.19687 1.44977 1.24009 0.86250 0.78664 0.78150 0.83034 1.21247 1.21657 1.21232 1.21034 0.97233 0.93622 0.98257 1.19818 0.87243 1.00060 1.04223 1.20287 0.83622 0.94616 1.06703 1.84449 1.15527 1.36180 1.74919 0.89144 0.88107 0.88143 0.84524 0.90478 0.90344 0.96127 0.96159 0.78230 0.93441 0.83926 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 36.01 0.38 0.02 16 2 C 0.24 2.81 8.24 -13.09 -0.11 2.70 16 3 N -0.48 -7.14 11.34 -8.70 -0.10 -7.24 16 4 C 0.02 0.36 7.24 -84.71 -0.61 -0.25 16 5 C -0.06 -0.91 9.73 -39.28 -0.38 -1.29 16 6 C -0.06 -0.92 5.13 -104.65 -0.54 -1.46 16 7 C -0.09 -1.44 5.45 -27.89 -0.15 -1.60 16 8 C 0.16 3.26 6.24 -4.04 -0.03 3.23 16 9 N -0.73 -18.92 5.60 -59.91 -0.34 -19.26 16 10 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 11 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 12 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 13 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 14 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 18 C -0.08 -1.06 9.67 -39.52 -0.38 -1.45 16 19 C -0.09 -1.17 10.06 -39.54 -0.40 -1.57 16 20 C 0.00 -0.04 7.43 -38.64 -0.29 -0.33 16 21 O -0.22 -2.89 10.77 3.60 0.04 -2.85 16 22 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.14 2.00 8.06 -52.49 -0.42 1.57 16 26 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 27 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.38 10.25 7.67 -40.82 -0.31 9.94 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.14 1.54 8.06 -52.48 -0.42 1.11 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 291.68 15.07 4.40 4.40 Total: -1.00 -33.69 291.68 -7.13 -40.82 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -4.08 Total: 3.80 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -2.75 Total: -9.51 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.29 Total: -54.29 kcal Atomic # 8 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.69 -7.13 -40.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258905516.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.349 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds