Wall clock time and date at job start Mon Mar 30 2020 03:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29905 * 124.85605 * 2 1 4 4 C 1.36061 * 108.79836 * 179.97438 * 3 2 1 5 5 C 1.39585 * 133.80183 * 180.02562 * 4 3 2 6 6 C 1.37684 * 119.73043 * 179.97438 * 5 4 3 7 7 C 1.50697 * 119.78924 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47466 * 89.99850 * 7 6 5 9 9 N 1.46505 * 109.47212 * 179.97438 * 8 7 6 10 10 C 1.36936 * 119.99992 * 179.97438 * 9 8 7 11 11 H 1.08006 * 119.99834 * 0.02562 * 10 9 8 12 12 C 1.38801 * 120.00093 * 180.02562 * 10 9 8 13 13 N 1.31619 * 120.00176 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00265 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46725 * 59.99976 * 14 12 10 16 16 H 1.48498 * 109.47172 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46920 * 300.00189 * 14 12 10 18 18 C 1.38721 * 120.41824 * 0.25266 * 6 5 4 19 19 C 1.37908 * 120.47898 * 359.51059 * 18 6 5 20 20 C 1.38673 * 119.87127 * 0.46685 * 19 18 6 21 21 O 1.34232 * 124.85297 * 179.97438 * 2 1 3 22 22 H 1.09002 * 109.47143 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46939 * 300.01222 * 1 2 3 24 24 H 1.08994 * 109.47432 * 60.00834 * 1 2 3 25 25 H 1.07998 * 120.13395 * 0.02562 * 5 4 3 26 26 H 1.09002 * 109.47120 * 329.99603 * 7 6 5 27 27 H 1.08998 * 109.46862 * 210.00405 * 7 6 5 28 28 H 1.09002 * 109.47153 * 59.99773 * 8 7 6 29 29 H 1.09001 * 109.46832 * 299.99964 * 8 7 6 30 30 H 0.96996 * 119.99606 * 0.02562 * 9 8 7 31 31 H 0.97001 * 120.00803 * 179.97438 * 13 12 10 32 32 H 1.08006 * 119.75755 * 179.74194 * 18 6 5 33 33 H 1.07992 * 120.06310 * 180.25176 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2494 1.0660 0.0000 4 6 3.5570 0.6896 0.0006 5 6 4.7641 1.3905 0.0013 6 6 5.9549 0.6994 0.0023 7 6 7.2589 1.4548 0.0025 8 6 7.6996 1.7113 1.4450 9 7 8.9676 2.4451 1.4451 10 6 9.5593 2.7894 2.6311 11 1 9.0914 2.5197 3.5664 12 6 10.7604 3.4851 2.6312 13 7 11.3304 3.8143 1.4914 14 14 11.5680 3.9542 4.2490 15 1 11.8649 2.7256 5.0285 16 1 12.8318 4.6853 3.9777 17 1 10.6494 4.8240 5.0268 18 6 5.9619 -0.6878 -0.0027 19 6 4.7770 -1.3933 0.0015 20 6 3.5684 -0.7134 0.0009 21 8 2.2741 -1.1015 0.0005 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 4.7640 2.4705 0.0019 26 1 7.1275 2.4067 -0.5121 27 1 8.0196 0.8665 -0.5107 28 1 7.8310 0.7594 1.9595 29 1 6.9388 2.2997 1.9580 30 1 9.3876 2.6877 0.6051 31 1 12.1696 4.3008 1.4914 32 1 6.9023 -1.2191 -0.0061 33 1 4.7903 -2.4731 0.0016 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258905516.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:36 Heat of formation + Delta-G solvation = 15.776780 kcal Electronic energy + Delta-G solvation = -16477.359882 eV Core-core repulsion = 13696.531051 eV Total energy + Delta-G solvation = -2780.828831 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.27195 -39.63293 -36.86485 -35.90302 -34.31824 -32.58100 -32.06747 -29.98203 -28.34246 -25.87807 -23.85846 -23.49681 -22.57677 -22.39857 -19.32396 -18.67963 -18.07270 -17.90722 -16.77748 -16.44943 -15.50654 -15.40766 -15.26303 -15.06232 -14.60012 -14.41909 -14.09586 -13.60945 -13.55647 -13.21431 -12.88499 -12.77441 -12.66684 -12.49607 -12.20361 -12.19256 -12.03269 -11.78477 -11.50608 -10.93967 -9.66717 -9.48008 -9.02363 -7.96072 -5.25860 -0.32591 0.12276 1.36629 1.47498 1.48176 1.50873 1.57119 2.51560 2.58761 2.81349 3.37335 3.46957 3.63439 3.98195 4.00557 4.18293 4.22781 4.36777 4.43202 4.45858 4.62238 4.64238 4.72684 4.78959 4.98325 5.00280 5.12547 5.18642 5.26398 5.31745 5.47876 5.54810 5.63650 6.26235 6.55256 7.32601 8.06819 8.31603 9.27194 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.048212 B = 0.003728 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.627681 B = 7508.212139 C = 7693.817059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.249 3.751 3 N -0.521 5.521 4 C 0.001 3.999 5 C -0.078 4.078 6 C -0.067 4.067 7 C -0.074 4.074 8 C 0.160 3.840 9 N -0.747 5.747 10 C -0.252 4.252 11 H 0.074 0.926 12 C -0.074 4.074 13 N -0.969 5.969 14 Si 0.975 3.025 15 H -0.276 1.276 16 H -0.293 1.293 17 H -0.279 1.279 18 C -0.085 4.085 19 C -0.084 4.084 20 C -0.019 4.019 21 O -0.221 6.221 22 H 0.116 0.884 23 H 0.116 0.884 24 H 0.118 0.882 25 H 0.129 0.871 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.026 0.974 29 H 0.012 0.988 30 H 0.376 0.624 31 H 0.253 0.747 32 H 0.166 0.834 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.751 -12.250 -4.956 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.038 3.962 3 N -0.252 5.252 4 C -0.110 4.110 5 C -0.097 4.097 6 C -0.069 4.069 7 C -0.111 4.111 8 C 0.033 3.967 9 N -0.390 5.390 10 C -0.383 4.383 11 H 0.092 0.908 12 C -0.266 4.266 13 N -0.619 5.619 14 Si 0.804 3.196 15 H -0.202 1.202 16 H -0.219 1.219 17 H -0.205 1.205 18 C -0.103 4.103 19 C -0.102 4.102 20 C -0.069 4.069 21 O -0.113 6.113 22 H 0.134 0.866 23 H 0.134 0.866 24 H 0.136 0.864 25 H 0.147 0.853 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.044 0.956 29 H 0.030 0.970 30 H 0.208 0.792 31 H 0.062 0.938 32 H 0.184 0.816 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -20.962 -11.635 -4.770 24.444 hybrid contribution 1.058 0.118 0.481 1.168 sum -19.904 -11.517 -4.289 23.393 Atomic orbital electron populations 1.20746 0.77003 1.07154 1.06832 1.27625 0.98329 0.77469 0.92813 1.70585 1.01300 1.30561 1.22722 1.20022 0.92330 0.92286 1.06336 1.20258 0.88640 1.00306 1.00517 1.19716 0.93784 0.94420 0.98960 1.20607 0.93406 1.00252 0.96878 1.20718 0.86754 0.94275 0.94910 1.42560 1.23492 1.67481 1.05451 1.19597 1.02754 1.28768 0.87209 0.90848 1.25589 0.98866 1.01846 1.00292 1.69802 1.19985 1.46026 1.26093 0.85191 0.77374 0.78000 0.79080 1.20189 1.21878 1.20491 1.21280 0.98523 0.92773 0.97698 1.20182 0.86207 1.01607 1.02209 1.20627 0.84648 0.94357 1.07218 1.84471 1.15186 1.36673 1.74990 0.86579 0.86606 0.86418 0.85280 0.90898 0.89299 0.95643 0.96996 0.79167 0.93833 0.81606 0.81647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.51 71.24 0.75 0.20 16 2 C 0.25 5.54 8.24 88.39 0.73 6.26 16 3 N -0.52 -15.42 11.34 -296.27 -3.36 -18.78 16 4 C 0.00 0.02 7.24 39.32 0.28 0.31 16 5 C -0.08 -2.43 9.73 22.46 0.22 -2.21 16 6 C -0.07 -1.92 5.13 -19.88 -0.10 -2.02 16 7 C -0.07 -2.38 5.45 29.85 0.16 -2.21 16 8 C 0.16 6.56 6.24 86.38 0.54 7.10 16 9 N -0.75 -38.84 5.60 -343.45 -1.92 -40.77 16 10 C -0.25 -14.41 9.99 84.03 0.84 -13.57 16 11 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 12 C -0.07 -4.28 5.50 84.86 0.47 -3.82 16 13 N -0.97 -59.76 13.06 21.65 0.28 -59.48 16 14 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 15 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 16 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 18 C -0.08 -2.01 9.67 22.31 0.22 -1.80 16 19 C -0.08 -1.89 10.06 22.30 0.22 -1.66 16 20 C -0.02 -0.52 7.43 22.88 0.17 -0.35 16 21 O -0.22 -5.46 10.77 -10.03 -0.11 -5.57 16 22 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 23 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 26 H 0.07 2.39 8.08 -2.39 -0.02 2.37 16 27 H 0.09 2.67 8.08 -2.39 -0.02 2.65 16 28 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.38 20.44 7.67 -92.71 -0.71 19.72 16 31 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.17 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -72.76 291.68 1.83 -70.94 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.41 Total: 18.85 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 4.50 Total: -13.78 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -5.00 Total: -119.02 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.11 Total: -5.57 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -72.76 1.83 -70.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258905516.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.716 kcal (2) G-P(sol) polarization free energy of solvation -72.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds