Wall clock time and date at job start Mon Mar 30 2020 04:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39533 * 123.87838 * 2 1 4 4 C 1.39363 * 130.82357 * 359.97438 * 3 2 1 5 5 C 1.37940 * 120.12737 * 180.02562 * 4 3 2 6 6 C 1.38304 * 120.37885 * 359.68157 * 5 4 3 7 7 C 1.50691 * 120.09189 * 180.32282 * 6 5 4 8 8 H 1.09004 * 109.47723 * 160.29151 * 7 6 5 9 9 N 1.46904 * 109.47264 * 40.28999 * 7 6 5 10 10 C 1.50694 * 109.47073 * 280.29475 * 7 6 5 11 11 H 1.08003 * 119.99991 * 359.97438 * 10 7 6 12 12 C 1.37883 * 119.99942 * 180.02562 * 10 7 6 13 13 N 1.31505 * 120.00121 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 119.99708 * 179.97438 * 12 10 7 15 15 H 1.48492 * 109.47535 * 59.99576 * 14 12 10 16 16 H 1.48508 * 109.46894 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47385 * 299.99399 * 14 12 10 18 18 C 1.38395 * 119.82099 * 0.61389 * 6 5 4 19 19 C 1.37681 * 119.91219 * 359.40880 * 18 6 5 20 20 C 1.51144 * 132.84728 * 180.27872 * 19 18 6 21 21 C 1.34373 * 123.87246 * 180.02562 * 2 1 3 22 22 O 1.21280 * 126.44392 * 0.03526 * 21 2 1 23 23 H 1.09000 * 109.47400 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47051 * 300.02496 * 1 2 3 25 25 H 1.09004 * 109.46998 * 60.01984 * 1 2 3 26 26 H 1.07998 * 119.93814 * 0.03775 * 4 3 2 27 27 H 1.08006 * 119.81200 * 180.02562 * 5 4 3 28 28 H 1.00897 * 111.00340 * 300.00616 * 9 7 6 29 29 H 1.00900 * 110.99715 * 63.95713 * 9 7 6 30 30 H 0.97006 * 119.99912 * 180.02562 * 13 12 10 31 31 H 1.08002 * 120.04481 * 179.68762 * 18 6 5 32 32 H 1.09002 * 110.50671 * 298.64617 * 20 19 18 33 33 H 1.09000 * 110.51107 * 61.21278 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2428 1.1584 0.0000 4 6 1.8751 2.5027 -0.0005 5 6 2.8432 3.4853 -0.0009 6 6 4.1840 3.1461 0.0058 7 6 5.2362 4.2249 0.0126 8 1 6.1807 3.8091 0.3637 9 7 4.8171 5.3120 0.9074 10 6 5.4126 4.7634 -1.3837 11 1 4.8220 4.3641 -2.1951 12 6 6.3285 5.7652 -1.6257 13 7 7.0479 6.2510 -0.6378 14 14 6.5476 6.4322 -3.3567 15 1 5.2613 6.9990 -3.8354 16 1 7.5845 7.4954 -3.3500 17 1 6.9711 5.3329 -4.2609 18 6 4.5568 1.8134 0.0001 19 6 3.5925 0.8307 0.0001 20 6 3.6635 -0.6791 0.0002 21 6 2.2139 -1.1157 -0.0005 22 8 1.8054 -2.2576 -0.0016 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5142 0.8897 25 1 -0.3633 0.5135 -0.8902 26 1 0.8302 2.7756 -0.0003 27 1 2.5525 4.5255 -0.0008 28 1 3.9433 5.7143 0.6031 29 1 4.7544 4.9909 1.8618 30 1 7.6921 6.9561 -0.8080 31 1 5.6028 1.5444 0.0001 32 1 4.1704 -1.0376 -0.8957 33 1 4.1725 -1.0375 0.8950 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258954107.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:11 Heat of formation + Delta-G solvation = 5.710470 kcal Electronic energy + Delta-G solvation = -17230.713795 eV Core-core repulsion = 14449.448457 eV Total energy + Delta-G solvation = -2781.265338 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.28542 -38.40864 -36.25915 -33.99705 -32.72650 -31.41380 -29.68004 -27.47793 -26.68216 -25.79469 -22.80949 -21.72041 -20.31068 -19.76355 -16.98517 -16.71826 -16.28524 -16.19142 -15.25078 -14.60378 -14.13945 -14.07411 -13.79861 -13.73627 -13.41841 -12.93534 -12.75815 -12.49970 -12.36546 -11.92571 -11.74435 -11.29465 -10.85243 -10.76847 -10.49040 -10.22685 -10.05953 -9.73032 -9.15932 -8.50046 -8.44977 -7.51030 -7.09488 -5.91241 -4.06758 1.54265 1.72544 2.58529 2.82428 3.32998 3.38166 3.40717 4.16846 4.26144 4.47504 4.58410 4.99863 5.11352 5.21518 5.29730 5.34974 5.44483 5.47285 5.55132 5.71616 5.95387 6.08377 6.17165 6.29745 6.39959 6.79588 6.84538 6.98058 6.98969 7.44505 7.50898 7.86717 7.94273 8.13830 8.58172 8.95516 9.10470 9.62323 11.12733 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.036844 B = 0.005358 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.775261 B = 5224.622246 C = 5315.230037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.550 5.550 3 C 0.104 3.896 4 C -0.132 4.132 5 C -0.090 4.090 6 C -0.083 4.083 7 C 0.256 3.744 8 H 0.048 0.952 9 N -0.809 5.809 10 C -0.533 4.533 11 H 0.053 0.947 12 C 0.085 3.915 13 N -0.846 5.846 14 Si 0.884 3.116 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.070 4.070 19 C -0.141 4.141 20 C -0.111 4.111 21 C 0.524 3.476 22 O -0.521 6.521 23 H 0.086 0.914 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.317 0.683 29 H 0.299 0.701 30 H 0.257 0.743 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.269 -8.486 2.561 12.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.274 5.274 3 C 0.010 3.990 4 C -0.153 4.153 5 C -0.109 4.109 6 C -0.086 4.086 7 C 0.146 3.854 8 H 0.066 0.934 9 N -0.335 5.335 10 C -0.571 4.571 11 H 0.072 0.928 12 C -0.122 4.122 13 N -0.481 5.481 14 Si 0.712 3.288 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.204 1.204 18 C -0.089 4.089 19 C -0.144 4.144 20 C -0.150 4.150 21 C 0.314 3.686 22 O -0.398 6.398 23 H 0.104 0.896 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.133 0.867 27 H 0.144 0.856 28 H 0.130 0.870 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.144 0.856 32 H 0.137 0.863 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.778 -8.651 2.403 12.557 hybrid contribution -0.929 -0.108 -0.874 1.280 sum -9.708 -8.760 1.530 13.165 Atomic orbital electron populations 1.21759 0.78202 1.03988 1.02418 1.45601 1.06914 1.05848 1.68991 1.18002 0.90043 0.87159 1.03751 1.20254 0.99554 0.89232 1.06222 1.20757 0.92328 0.98686 0.99152 1.21793 0.96581 0.96057 0.94196 1.18183 0.89771 0.83822 0.93585 0.93414 1.59205 1.36242 1.35305 1.02771 1.20789 1.23091 1.21484 0.91773 0.92847 1.24938 0.95200 0.96039 0.96055 1.70085 1.22136 1.25582 1.30257 0.86821 0.77809 0.78689 0.85482 1.20360 1.21329 1.20366 1.20265 0.98396 0.91199 0.99077 1.19751 0.92900 0.94124 1.07598 1.21000 0.94825 0.93431 1.05793 1.20690 0.89233 0.83826 0.74819 1.90734 1.79226 1.19078 1.50759 0.89566 0.91410 0.91370 0.86700 0.85568 0.87006 0.89095 0.93332 0.85625 0.86314 0.86378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.86 59.85 0.65 1.49 16 2 N -0.55 -7.73 3.13 -120.62 -0.38 -8.11 16 3 C 0.10 1.59 6.70 -83.69 -0.56 1.03 16 4 C -0.13 -1.98 9.84 -39.27 -0.39 -2.37 16 5 C -0.09 -1.54 9.27 -39.67 -0.37 -1.91 16 6 C -0.08 -1.58 4.89 -104.54 -0.51 -2.09 16 7 C 0.26 5.87 2.85 -70.02 -0.20 5.67 16 8 H 0.05 1.21 8.01 -51.93 -0.42 0.79 16 9 N -0.81 -17.66 8.37 -6.65 -0.06 -17.71 16 10 C -0.53 -13.85 8.70 -34.44 -0.30 -14.15 16 11 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16 12 C 0.08 2.27 5.39 -17.82 -0.10 2.18 16 13 N -0.85 -23.74 12.77 55.43 0.71 -23.03 16 14 Si 0.88 20.68 29.54 -169.99 -5.02 15.66 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 18 C -0.07 -1.21 9.66 -39.73 -0.38 -1.60 16 19 C -0.14 -2.18 6.35 -104.37 -0.66 -2.85 16 20 C -0.11 -1.45 6.88 -28.48 -0.20 -1.65 16 21 C 0.52 7.82 8.24 -10.83 -0.09 7.73 16 22 O -0.52 -8.96 17.42 5.56 0.10 -8.86 16 23 H 0.09 0.90 7.57 -51.93 -0.39 0.51 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 27 H 0.13 2.07 6.67 -52.48 -0.35 1.72 16 28 H 0.32 6.52 7.35 -39.29 -0.29 6.24 16 29 H 0.30 5.80 9.06 -39.29 -0.36 5.44 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 31 H 0.13 2.05 8.04 -52.49 -0.42 1.63 16 32 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.12 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 285.56 15.07 4.30 4.30 Total: -1.00 -30.16 285.56 -7.33 -37.49 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -3.88 Total: 8.76 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -3.10 Total: -8.51 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: 0.27 Total: -48.85 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.10 Total: -8.86 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.16 -7.33 -37.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258954107.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.204 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds