Wall clock time and date at job start Mon Mar 30 2020 04:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39533 * 123.87838 * 2 1 4 4 C 1.39363 * 130.82357 * 359.97438 * 3 2 1 5 5 C 1.37940 * 120.12737 * 180.02562 * 4 3 2 6 6 C 1.38304 * 120.37885 * 359.68157 * 5 4 3 7 7 C 1.50691 * 120.09189 * 180.32282 * 6 5 4 8 8 H 1.09004 * 109.47723 * 160.29151 * 7 6 5 9 9 N 1.46904 * 109.47264 * 40.28999 * 7 6 5 10 10 C 1.50694 * 109.47073 * 280.29475 * 7 6 5 11 11 H 1.08003 * 119.99991 * 359.97438 * 10 7 6 12 12 C 1.37883 * 119.99942 * 180.02562 * 10 7 6 13 13 N 1.31505 * 120.00121 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 119.99708 * 179.97438 * 12 10 7 15 15 H 1.48492 * 109.47535 * 59.99576 * 14 12 10 16 16 H 1.48508 * 109.46894 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47385 * 299.99399 * 14 12 10 18 18 C 1.38395 * 119.82099 * 0.61389 * 6 5 4 19 19 C 1.37681 * 119.91219 * 359.40880 * 18 6 5 20 20 C 1.51144 * 132.84728 * 180.27872 * 19 18 6 21 21 C 1.34373 * 123.87246 * 180.02562 * 2 1 3 22 22 O 1.21280 * 126.44392 * 0.03526 * 21 2 1 23 23 H 1.09000 * 109.47400 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47051 * 300.02496 * 1 2 3 25 25 H 1.09004 * 109.46998 * 60.01984 * 1 2 3 26 26 H 1.07998 * 119.93814 * 0.03775 * 4 3 2 27 27 H 1.08006 * 119.81200 * 180.02562 * 5 4 3 28 28 H 1.00897 * 111.00340 * 300.00616 * 9 7 6 29 29 H 1.00900 * 110.99715 * 63.95713 * 9 7 6 30 30 H 0.97006 * 119.99912 * 180.02562 * 13 12 10 31 31 H 1.08002 * 120.04481 * 179.68762 * 18 6 5 32 32 H 1.09002 * 110.50671 * 298.64617 * 20 19 18 33 33 H 1.09000 * 110.51107 * 61.21278 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2428 1.1584 0.0000 4 6 1.8751 2.5027 -0.0005 5 6 2.8432 3.4853 -0.0009 6 6 4.1840 3.1461 0.0058 7 6 5.2362 4.2249 0.0126 8 1 6.1807 3.8091 0.3637 9 7 4.8171 5.3120 0.9074 10 6 5.4126 4.7634 -1.3837 11 1 4.8220 4.3641 -2.1951 12 6 6.3285 5.7652 -1.6257 13 7 7.0479 6.2510 -0.6378 14 14 6.5476 6.4322 -3.3567 15 1 5.2613 6.9990 -3.8354 16 1 7.5845 7.4954 -3.3500 17 1 6.9711 5.3329 -4.2609 18 6 4.5568 1.8134 0.0001 19 6 3.5925 0.8307 0.0001 20 6 3.6635 -0.6791 0.0002 21 6 2.2139 -1.1157 -0.0005 22 8 1.8054 -2.2576 -0.0016 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5142 0.8897 25 1 -0.3633 0.5135 -0.8902 26 1 0.8302 2.7756 -0.0003 27 1 2.5525 4.5255 -0.0008 28 1 3.9433 5.7143 0.6031 29 1 4.7544 4.9909 1.8618 30 1 7.6921 6.9561 -0.8080 31 1 5.6028 1.5444 0.0001 32 1 4.1704 -1.0376 -0.8957 33 1 4.1725 -1.0375 0.8950 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258954107.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:11 Heat of formation + Delta-G solvation = -13.830585 kcal Electronic energy + Delta-G solvation = -17231.561159 eV Core-core repulsion = 14449.448457 eV Total energy + Delta-G solvation = -2782.112702 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.45596 -39.70994 -37.61904 -35.55486 -33.99195 -33.21267 -30.97923 -28.79252 -27.98992 -27.35858 -24.39320 -22.98645 -21.59555 -21.10633 -18.46603 -18.11574 -17.68249 -17.33780 -16.79757 -16.35832 -15.75089 -15.31137 -15.16543 -14.73167 -14.61821 -14.35247 -14.03373 -13.94473 -13.49135 -13.27940 -13.11069 -12.94986 -12.67388 -12.50037 -11.92901 -11.72750 -11.40423 -11.24274 -10.88289 -10.49746 -9.73604 -8.97215 -8.63368 -7.93125 -6.14470 0.27266 0.46217 1.40099 1.47303 1.48448 1.55043 1.75612 2.49676 2.90475 3.13294 3.30451 3.45331 3.89120 4.09801 4.23631 4.35564 4.43687 4.48753 4.50332 4.55217 4.64689 4.71694 4.86971 4.99535 5.10455 5.38546 5.48128 5.59837 5.76434 5.80029 5.95004 6.14297 6.25574 6.71582 6.81623 7.17899 7.34070 7.58075 9.09117 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.036844 B = 0.005358 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.775261 B = 5224.622246 C = 5315.230037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.550 5.550 3 C 0.107 3.893 4 C -0.122 4.122 5 C -0.094 4.094 6 C -0.106 4.106 7 C 0.262 3.738 8 H 0.014 0.986 9 N -0.821 5.821 10 C -0.540 4.540 11 H 0.046 0.954 12 C 0.038 3.962 13 N -0.879 5.879 14 Si 0.943 3.057 15 H -0.274 1.274 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.079 4.079 19 C -0.141 4.141 20 C -0.107 4.107 21 C 0.521 3.479 22 O -0.547 6.547 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.147 0.853 27 H 0.129 0.871 28 H 0.324 0.676 29 H 0.312 0.688 30 H 0.255 0.745 31 H 0.125 0.875 32 H 0.136 0.864 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.857 -9.172 2.150 14.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.272 5.272 3 C 0.012 3.988 4 C -0.143 4.143 5 C -0.113 4.113 6 C -0.109 4.109 7 C 0.152 3.848 8 H 0.032 0.968 9 N -0.348 5.348 10 C -0.579 4.579 11 H 0.064 0.936 12 C -0.166 4.166 13 N -0.515 5.515 14 Si 0.769 3.231 15 H -0.199 1.199 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.098 4.098 19 C -0.144 4.144 20 C -0.146 4.146 21 C 0.312 3.688 22 O -0.426 6.426 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.102 0.898 26 H 0.164 0.836 27 H 0.147 0.853 28 H 0.138 0.862 29 H 0.123 0.877 30 H 0.064 0.936 31 H 0.143 0.857 32 H 0.154 0.846 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.392 -9.338 1.989 14.112 hybrid contribution -0.512 0.028 -0.713 0.878 sum -10.903 -9.310 1.276 14.394 Atomic orbital electron populations 1.22028 0.76194 1.04666 1.04156 1.45742 1.08255 1.05060 1.68157 1.18152 0.90215 0.87691 1.02729 1.20440 1.00626 0.88569 1.04626 1.20777 0.91787 0.99439 0.99335 1.21373 0.96538 0.95698 0.97333 1.17805 0.89848 0.85019 0.92147 0.96831 1.58995 1.36789 1.35559 1.03488 1.21115 1.22457 1.21119 0.93219 0.93559 1.25618 0.95175 0.96560 0.99258 1.70207 1.22992 1.26288 1.32031 0.85893 0.77698 0.77985 0.81538 1.19894 1.21290 1.20074 1.20234 0.98953 0.91039 0.99589 1.19867 0.92769 0.95178 1.06568 1.21083 0.94287 0.91579 1.07616 1.20899 0.89944 0.83604 0.74344 1.90726 1.79738 1.19999 1.52116 0.89497 0.89515 0.89798 0.83567 0.85332 0.86248 0.87657 0.93641 0.85691 0.84646 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.27 10.86 127.77 1.39 2.66 16 2 N -0.55 -13.85 3.13 -654.16 -2.05 -15.90 16 3 C 0.11 2.97 6.70 38.34 0.26 3.23 16 4 C -0.12 -3.32 9.84 22.47 0.22 -3.09 16 5 C -0.09 -3.09 9.27 22.21 0.21 -2.88 16 6 C -0.11 -4.03 4.89 -19.81 -0.10 -4.13 16 7 C 0.26 12.23 2.85 43.42 0.12 12.36 16 8 H 0.01 0.72 8.01 -2.38 -0.02 0.70 16 9 N -0.82 -36.20 8.37 -174.96 -1.46 -37.66 16 10 C -0.54 -28.40 8.70 25.60 0.22 -28.18 16 11 H 0.05 2.44 7.74 -2.91 -0.02 2.42 16 12 C 0.04 2.03 5.39 84.66 0.46 2.48 16 13 N -0.88 -50.14 12.77 21.45 0.27 -49.86 16 14 Si 0.94 42.66 29.54 68.60 2.03 44.68 16 15 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 16 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 18 C -0.08 -2.69 9.66 22.18 0.21 -2.47 16 19 C -0.14 -4.10 6.35 -19.70 -0.13 -4.22 16 20 C -0.11 -2.53 6.88 29.46 0.20 -2.33 16 21 C 0.52 14.32 8.24 87.94 0.72 15.04 16 22 O -0.55 -17.79 17.42 -3.03 -0.05 -17.84 16 23 H 0.09 1.59 7.57 -2.39 -0.02 1.57 16 24 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 27 H 0.13 4.07 6.67 -2.91 -0.02 4.05 16 28 H 0.32 13.34 7.35 -89.70 -0.66 12.68 16 29 H 0.31 12.22 9.06 -89.69 -0.81 11.40 16 30 H 0.25 13.99 8.31 -92.70 -0.77 13.22 16 31 H 0.13 4.13 8.04 -2.91 -0.02 4.11 16 32 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.14 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -64.24 285.56 2.20 -62.04 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -0.33 Total: 26.09 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 3.79 Total: -11.54 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -3.24 Total: -103.43 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.05 Total: -17.84 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -64.24 2.20 -62.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258954107.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.205 kcal (2) G-P(sol) polarization free energy of solvation -64.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds