Wall clock time and date at job start Mon Mar 30 2020 04:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37693 * 125.06956 * 2 1 4 4 C 1.39218 * 133.37769 * 0.02562 * 3 2 1 5 5 C 1.37717 * 120.02204 * 180.02562 * 4 3 2 6 6 C 1.38795 * 120.72362 * 359.97438 * 5 4 3 7 7 C 1.38124 * 120.31439 * 359.97438 * 6 5 4 8 8 O 1.35880 * 120.22267 * 180.02562 * 7 6 5 9 9 C 1.40056 * 119.55427 * 0.06266 * 7 6 5 10 10 C 1.46484 * 133.98189 * 179.97438 * 9 7 6 11 11 C 1.34209 * 106.99504 * 179.97438 * 10 9 7 12 12 C 1.50702 * 125.06009 * 180.27149 * 11 10 9 13 13 H 1.08997 * 109.47437 * 155.24197 * 12 11 10 14 14 N 1.46894 * 109.47069 * 35.23748 * 12 11 10 15 15 C 1.50698 * 109.46691 * 275.23728 * 12 11 10 16 16 H 1.08004 * 120.00152 * 0.02562 * 15 12 11 17 17 C 1.37879 * 119.99864 * 179.97438 * 15 12 11 18 18 N 1.31518 * 120.00079 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00049 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.47164 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47170 * 120.00272 * 19 17 15 22 22 H 1.48497 * 109.47325 * 240.00412 * 19 17 15 23 23 H 1.09002 * 109.46903 * 264.81861 * 1 2 3 24 24 H 1.09007 * 109.46611 * 24.81124 * 1 2 3 25 25 H 1.08996 * 109.47728 * 144.81591 * 1 2 3 26 26 H 1.07993 * 119.98756 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.63714 * 179.97438 * 5 4 3 28 28 H 1.07997 * 119.84187 * 179.97438 * 6 5 4 29 29 H 0.96705 * 113.99564 * 89.99946 * 8 7 6 30 30 H 1.07998 * 126.50642 * 0.02562 * 10 9 7 31 31 H 1.00905 * 111.00390 * 295.31211 * 14 12 11 32 32 H 1.00896 * 111.00404 * 59.26256 * 14 12 11 33 33 H 0.96991 * 120.00104 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2562 1.1270 0.0000 4 6 1.9774 2.4909 0.0005 5 6 3.0076 3.4048 -0.0002 6 6 4.3298 2.9828 -0.0008 7 6 4.6314 1.6349 -0.0002 8 8 5.9266 1.2238 -0.0003 9 6 3.5934 0.6947 -0.0003 10 6 3.5470 -0.7694 -0.0003 11 6 2.2517 -1.1208 0.0001 12 6 1.7393 -2.5380 0.0061 13 1 0.7377 -2.5605 0.4357 14 7 2.6358 -3.3795 0.8099 15 6 1.6917 -3.0609 -1.4064 16 1 2.0020 -2.4302 -2.2264 17 6 1.2531 -4.3448 -1.6519 18 7 0.8758 -5.1130 -0.6533 19 14 1.1949 -4.9933 -3.4027 20 1 1.6691 -3.9404 -4.3365 21 1 2.0704 -6.1872 -3.5178 22 1 -0.2005 -5.3677 -3.7458 23 1 -0.3633 -0.0928 1.0235 24 1 -0.3633 0.9329 -0.4313 25 1 -0.3634 -0.8398 -0.5921 26 1 0.9528 2.8324 0.0013 27 1 2.7842 4.4615 -0.0003 28 1 5.1266 3.7118 -0.0018 29 1 6.3016 1.1053 0.8832 30 1 4.3943 -1.4391 0.0002 31 1 3.5514 -3.4367 0.3897 32 1 2.6941 -3.0421 1.7590 33 1 0.5669 -6.0161 -0.8259 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259519496.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:15 Heat of formation + Delta-G solvation = 19.004962 kcal Electronic energy + Delta-G solvation = -17509.068373 eV Core-core repulsion = 14728.379527 eV Total energy + Delta-G solvation = -2780.688846 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.90860 -38.01393 -35.82333 -34.25237 -32.18987 -31.35607 -29.18489 -27.89925 -26.14067 -25.63973 -23.01590 -21.31841 -21.06526 -18.99760 -17.67874 -16.55039 -16.19319 -15.77851 -15.14836 -14.79819 -14.54674 -14.18849 -14.11832 -13.70740 -13.04401 -12.55553 -12.34203 -12.24556 -11.96265 -11.84127 -11.25970 -10.98192 -10.92805 -10.84242 -10.57407 -10.34560 -9.92283 -9.30194 -8.99224 -8.54750 -7.67660 -7.34619 -6.96029 -5.99403 -4.15660 1.40509 1.91789 3.27153 3.30004 3.36337 3.38957 3.44696 4.06129 4.41547 4.56528 5.07921 5.19557 5.25935 5.30330 5.46253 5.59382 5.62700 5.83078 5.94397 6.03022 6.17960 6.21780 6.42348 6.50942 6.71713 6.85268 6.94578 7.06364 7.43013 7.73509 7.80048 7.85725 8.00416 8.04869 8.50621 8.89252 9.01289 9.54249 11.04458 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.029233 B = 0.006502 C = 0.006130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.593785 B = 4305.252988 C = 4566.481492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.479 5.479 3 C 0.099 3.901 4 C -0.136 4.136 5 C -0.103 4.103 6 C -0.183 4.183 7 C 0.140 3.860 8 O -0.497 6.497 9 C -0.122 4.122 10 C -0.229 4.229 11 C 0.107 3.893 12 C 0.276 3.724 13 H 0.048 0.952 14 N -0.800 5.800 15 C -0.534 4.534 16 H 0.056 0.944 17 C 0.085 3.915 18 N -0.845 5.845 19 Si 0.887 3.113 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.284 1.284 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.114 0.886 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.383 0.617 30 H 0.139 0.861 31 H 0.325 0.675 32 H 0.300 0.700 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.057 12.595 3.944 13.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.162 5.162 3 C -0.008 4.008 4 C -0.157 4.157 5 C -0.122 4.122 6 C -0.203 4.203 7 C 0.095 3.905 8 O -0.306 6.306 9 C -0.127 4.127 10 C -0.253 4.253 11 C -0.003 4.003 12 C 0.165 3.835 13 H 0.065 0.935 14 N -0.325 5.325 15 C -0.573 4.573 16 H 0.075 0.925 17 C -0.122 4.122 18 N -0.479 5.479 19 Si 0.714 3.286 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.210 1.210 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.113 0.887 26 H 0.133 0.867 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.238 0.762 30 H 0.156 0.844 31 H 0.138 0.862 32 H 0.111 0.889 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.037 11.756 3.247 12.240 hybrid contribution 0.606 0.519 -0.410 0.897 sum 1.644 12.274 2.837 12.705 Atomic orbital electron populations 1.21892 0.77554 1.04060 1.02698 1.44012 1.05878 1.03946 1.62358 1.18171 0.89995 0.88357 1.04298 1.19940 0.99176 0.89301 1.07267 1.20446 0.91591 0.98416 1.01759 1.20945 0.96807 0.94317 1.08207 1.17828 0.82256 0.90266 1.00124 1.84784 1.23539 1.89421 1.32895 1.19517 0.91803 0.94384 1.07026 1.21137 0.95779 0.91388 1.16957 1.23065 0.90271 0.91305 0.95681 1.17975 0.92835 0.77723 0.95006 0.93479 1.59295 1.15293 1.55078 1.02843 1.20828 1.47204 0.99077 0.90218 0.92530 1.24942 0.94197 0.96610 0.96495 1.70112 1.40222 1.07662 1.29950 0.86638 0.77625 0.79080 0.85232 1.19789 1.20814 1.21004 0.91858 0.90940 0.88703 0.86748 0.86047 0.86157 0.76176 0.84370 0.86219 0.88946 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 10.47 59.85 0.63 1.87 16 2 N -0.48 -9.22 3.18 -117.18 -0.37 -9.60 16 3 C 0.10 1.84 6.80 -84.00 -0.57 1.27 16 4 C -0.14 -2.08 9.87 -39.41 -0.39 -2.47 16 5 C -0.10 -1.42 10.01 -39.57 -0.40 -1.81 16 6 C -0.18 -2.69 9.97 -39.42 -0.39 -3.08 16 7 C 0.14 2.39 6.74 -38.94 -0.26 2.13 16 8 O -0.50 -7.68 13.51 -19.36 -0.26 -7.94 16 9 C -0.12 -2.37 6.32 -105.03 -0.66 -3.03 16 10 C -0.23 -4.77 10.36 -37.68 -0.39 -5.17 16 11 C 0.11 2.29 5.79 -81.73 -0.47 1.82 16 12 C 0.28 6.59 2.68 -70.02 -0.19 6.40 16 13 H 0.05 1.21 7.44 -51.93 -0.39 0.82 16 14 N -0.80 -18.23 8.35 -6.65 -0.06 -18.28 16 15 C -0.53 -14.28 8.67 -34.44 -0.30 -14.58 16 16 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 17 C 0.09 2.30 5.39 -17.82 -0.10 2.20 16 18 N -0.85 -23.69 12.77 55.43 0.71 -22.98 16 19 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.07 0.93 7.82 -51.93 -0.41 0.52 16 25 H 0.09 1.60 7.67 -51.93 -0.40 1.21 16 26 H 0.11 1.46 7.88 -52.49 -0.41 1.05 16 27 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 28 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.38 3.97 9.06 45.56 0.41 4.38 16 30 H 0.14 2.79 7.52 -52.49 -0.39 2.40 16 31 H 0.33 7.24 8.13 -39.29 -0.32 6.92 16 32 H 0.30 6.11 9.02 -39.29 -0.35 5.75 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 286.58 15.07 4.32 4.32 Total: -1.00 -31.21 286.58 -7.25 -38.46 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -3.07 Total: 14.56 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -3.49 Total: -14.46 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.28 Total: -50.86 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.26 Total: -7.94 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.21 -7.25 -38.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259519496.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.462 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds