Wall clock time and date at job start Mon Mar 30 2020 04:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37693 * 125.06956 * 2 1 4 4 C 1.39218 * 133.37769 * 0.02562 * 3 2 1 5 5 C 1.37717 * 120.02204 * 180.02562 * 4 3 2 6 6 C 1.38795 * 120.72362 * 359.97438 * 5 4 3 7 7 C 1.38124 * 120.31439 * 359.97438 * 6 5 4 8 8 O 1.35880 * 120.22267 * 180.02562 * 7 6 5 9 9 C 1.40056 * 119.55427 * 0.06266 * 7 6 5 10 10 C 1.46484 * 133.98189 * 179.97438 * 9 7 6 11 11 C 1.34209 * 106.99504 * 179.97438 * 10 9 7 12 12 C 1.50702 * 125.06009 * 180.27149 * 11 10 9 13 13 H 1.08997 * 109.47437 * 155.24197 * 12 11 10 14 14 N 1.46894 * 109.47069 * 35.23748 * 12 11 10 15 15 C 1.50698 * 109.46691 * 275.23728 * 12 11 10 16 16 H 1.08004 * 120.00152 * 0.02562 * 15 12 11 17 17 C 1.37879 * 119.99864 * 179.97438 * 15 12 11 18 18 N 1.31518 * 120.00079 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00049 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.47164 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47170 * 120.00272 * 19 17 15 22 22 H 1.48497 * 109.47325 * 240.00412 * 19 17 15 23 23 H 1.09002 * 109.46903 * 264.81861 * 1 2 3 24 24 H 1.09007 * 109.46611 * 24.81124 * 1 2 3 25 25 H 1.08996 * 109.47728 * 144.81591 * 1 2 3 26 26 H 1.07993 * 119.98756 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.63714 * 179.97438 * 5 4 3 28 28 H 1.07997 * 119.84187 * 179.97438 * 6 5 4 29 29 H 0.96705 * 113.99564 * 89.99946 * 8 7 6 30 30 H 1.07998 * 126.50642 * 0.02562 * 10 9 7 31 31 H 1.00905 * 111.00390 * 295.31211 * 14 12 11 32 32 H 1.00896 * 111.00404 * 59.26256 * 14 12 11 33 33 H 0.96991 * 120.00104 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2562 1.1270 0.0000 4 6 1.9774 2.4909 0.0005 5 6 3.0076 3.4048 -0.0002 6 6 4.3298 2.9828 -0.0008 7 6 4.6314 1.6349 -0.0002 8 8 5.9266 1.2238 -0.0003 9 6 3.5934 0.6947 -0.0003 10 6 3.5470 -0.7694 -0.0003 11 6 2.2517 -1.1208 0.0001 12 6 1.7393 -2.5380 0.0061 13 1 0.7377 -2.5605 0.4357 14 7 2.6358 -3.3795 0.8099 15 6 1.6917 -3.0609 -1.4064 16 1 2.0020 -2.4302 -2.2264 17 6 1.2531 -4.3448 -1.6519 18 7 0.8758 -5.1130 -0.6533 19 14 1.1949 -4.9933 -3.4027 20 1 1.6691 -3.9404 -4.3365 21 1 2.0704 -6.1872 -3.5178 22 1 -0.2005 -5.3677 -3.7458 23 1 -0.3633 -0.0928 1.0235 24 1 -0.3633 0.9329 -0.4313 25 1 -0.3634 -0.8398 -0.5921 26 1 0.9528 2.8324 0.0013 27 1 2.7842 4.4615 -0.0003 28 1 5.1266 3.7118 -0.0018 29 1 6.3016 1.1053 0.8832 30 1 4.3943 -1.4391 0.0002 31 1 3.5514 -3.4367 0.3897 32 1 2.6941 -3.0421 1.7590 33 1 0.5669 -6.0161 -0.8259 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259519496.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:14 Heat of formation + Delta-G solvation = -3.710100 kcal Electronic energy + Delta-G solvation = -17510.053372 eV Core-core repulsion = 14728.379527 eV Total energy + Delta-G solvation = -2781.673845 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.28285 -39.27340 -37.16930 -35.95551 -33.81125 -33.08842 -30.44189 -29.32822 -28.02360 -27.01012 -24.72602 -22.60545 -22.44760 -20.51186 -18.95997 -18.56353 -17.55644 -17.08560 -16.71158 -16.21232 -16.16157 -15.86479 -15.41779 -15.11819 -14.66744 -14.19739 -13.89672 -13.54878 -13.25550 -13.14580 -13.04428 -12.76555 -12.65337 -12.21916 -12.09113 -11.84732 -11.50020 -11.23581 -10.62561 -10.34494 -9.22115 -8.94545 -8.39193 -8.05125 -6.28468 0.15166 0.68134 1.38562 1.42018 1.51949 1.83184 2.01072 2.44213 2.84515 3.18062 3.39226 3.88193 3.95106 4.05486 4.27940 4.33446 4.38035 4.42534 4.55351 4.69949 4.80621 4.85150 4.99386 5.09293 5.30313 5.55341 5.59130 5.68478 5.81923 5.89675 6.07223 6.26947 6.50366 6.57756 6.92857 6.96551 7.16083 7.44553 8.97153 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.029233 B = 0.006502 C = 0.006130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.593785 B = 4305.252988 C = 4566.481492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.486 5.486 3 C 0.085 3.915 4 C -0.142 4.142 5 C -0.086 4.086 6 C -0.178 4.178 7 C 0.128 3.872 8 O -0.508 6.508 9 C -0.158 4.158 10 C -0.238 4.238 11 C 0.081 3.919 12 C 0.286 3.714 13 H 0.023 0.977 14 N -0.807 5.807 15 C -0.545 4.545 16 H 0.038 0.962 17 C 0.043 3.957 18 N -0.874 5.874 19 Si 0.947 3.053 20 H -0.277 1.277 21 H -0.279 1.279 22 H -0.275 1.275 23 H 0.077 0.923 24 H 0.104 0.896 25 H 0.072 0.928 26 H 0.143 0.857 27 H 0.166 0.834 28 H 0.150 0.850 29 H 0.403 0.597 30 H 0.131 0.869 31 H 0.326 0.674 32 H 0.313 0.687 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.141 15.204 3.701 15.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.169 5.169 3 C -0.022 4.022 4 C -0.163 4.163 5 C -0.105 4.105 6 C -0.197 4.197 7 C 0.083 3.917 8 O -0.321 6.321 9 C -0.164 4.164 10 C -0.262 4.262 11 C -0.029 4.029 12 C 0.175 3.825 13 H 0.041 0.959 14 N -0.334 5.334 15 C -0.584 4.584 16 H 0.056 0.944 17 C -0.161 4.161 18 N -0.509 5.509 19 Si 0.773 3.227 20 H -0.202 1.202 21 H -0.205 1.205 22 H -0.201 1.201 23 H 0.096 0.904 24 H 0.123 0.877 25 H 0.091 0.909 26 H 0.161 0.839 27 H 0.183 0.817 28 H 0.167 0.833 29 H 0.262 0.738 30 H 0.149 0.851 31 H 0.139 0.861 32 H 0.125 0.875 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.119 14.378 3.020 14.734 hybrid contribution 0.662 -0.132 -0.293 0.736 sum 1.780 14.246 2.727 14.613 Atomic orbital electron populations 1.22051 0.76008 1.04812 1.03551 1.44112 1.06888 1.03593 1.62324 1.18617 0.89513 0.89414 1.04660 1.20364 1.01324 0.87814 1.06750 1.21007 0.90622 1.00318 0.98540 1.21350 0.98340 0.93623 1.06417 1.18080 0.82233 0.90976 1.00421 1.84720 1.22965 1.89520 1.34872 1.19776 0.93479 0.93800 1.09318 1.21194 0.95349 0.92816 1.16848 1.22524 0.90979 0.90997 0.98401 1.17539 0.91939 0.79570 0.93487 0.95883 1.59143 1.15134 1.55498 1.03579 1.20984 1.47007 0.99163 0.91262 0.94384 1.25582 0.93894 0.96778 0.99896 1.70204 1.41095 1.07920 1.31654 0.85703 0.77900 0.78162 0.80929 1.20223 1.20466 1.20053 0.90406 0.87721 0.90927 0.83891 0.81694 0.83259 0.73843 0.85124 0.86120 0.87548 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.37 10.47 127.77 1.34 3.71 16 2 N -0.49 -18.81 3.18 -524.65 -1.67 -20.48 16 3 C 0.08 3.05 6.80 39.02 0.27 3.31 16 4 C -0.14 -3.85 9.87 22.38 0.22 -3.63 16 5 C -0.09 -1.96 10.01 22.28 0.22 -1.74 16 6 C -0.18 -4.56 9.97 22.38 0.22 -4.33 16 7 C 0.13 4.16 6.74 22.68 0.15 4.31 16 8 O -0.51 -15.08 13.51 -92.20 -1.25 -16.32 16 9 C -0.16 -6.13 6.32 -20.13 -0.13 -6.26 16 10 C -0.24 -10.24 10.36 23.50 0.24 -10.00 16 11 C 0.08 3.62 5.79 40.84 0.24 3.86 16 12 C 0.29 14.24 2.68 43.42 0.12 14.35 16 13 H 0.02 1.25 7.44 -2.39 -0.02 1.23 16 14 N -0.81 -38.18 8.35 -174.97 -1.46 -39.64 16 15 C -0.55 -30.16 8.67 25.60 0.22 -29.94 16 16 H 0.04 2.19 7.74 -2.91 -0.02 2.17 16 17 C 0.04 2.38 5.39 84.65 0.46 2.83 16 18 N -0.87 -49.91 12.77 21.45 0.27 -49.63 16 19 Si 0.95 43.72 29.54 68.60 2.03 45.75 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 23 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.10 2.48 7.82 -2.38 -0.02 2.46 16 25 H 0.07 2.55 7.67 -2.39 -0.02 2.53 16 26 H 0.14 3.00 7.88 -2.91 -0.02 2.98 16 27 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 28 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 29 H 0.40 7.85 9.06 -74.05 -0.67 7.18 16 30 H 0.13 5.56 7.52 -2.91 -0.02 5.54 16 31 H 0.33 15.14 8.13 -89.69 -0.73 14.41 16 32 H 0.31 13.22 9.02 -89.70 -0.81 12.41 16 33 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -68.31 286.58 0.45 -67.87 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: -1.05 Total: 35.97 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 3.57 Total: -23.52 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -2.86 Total: -109.75 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -1.25 Total: -16.32 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -68.31 0.45 -67.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259519496.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.157 kcal (2) G-P(sol) polarization free energy of solvation -68.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds