Wall clock time and date at job start Mon Mar 30 2020 03:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 119.99969 * 2 1 4 4 C 1.38216 * 119.99894 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00367 * 359.97438 * 4 3 2 6 6 C 1.38218 * 119.99418 * 359.81151 * 5 4 3 7 7 C 1.38210 * 120.00040 * 180.02562 * 2 1 3 8 8 C 1.50701 * 120.00199 * 359.97438 * 7 2 1 9 9 H 1.09000 * 110.48984 * 38.74723 * 8 7 2 10 10 C 1.54108 * 110.87935 * 276.08966 * 8 7 2 11 11 N 1.47056 * 103.86190 * 241.61627 * 10 8 7 12 12 C 1.37188 * 125.40843 * 179.86594 * 11 10 8 13 13 H 1.08000 * 119.99795 * 185.37190 * 12 11 10 14 14 C 1.38874 * 120.00280 * 5.10708 * 12 11 10 15 15 N 1.31472 * 120.00068 * 353.36352 * 14 12 11 16 16 Si 1.86804 * 120.00116 * 173.36326 * 14 12 11 17 17 H 1.48500 * 109.46851 * 60.00168 * 16 14 12 18 18 H 1.48502 * 109.46869 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47066 * 299.99792 * 16 14 12 20 20 C 1.33946 * 109.17957 * 359.60580 * 11 10 8 21 21 O 1.21585 * 123.04530 * 180.23923 * 20 11 10 22 22 N 1.33957 * 113.91528 * 0.26418 * 20 11 10 23 23 H 1.09001 * 109.47090 * 269.97144 * 1 2 3 24 24 H 1.09002 * 109.47404 * 29.97446 * 1 2 3 25 25 H 1.09003 * 109.47190 * 149.97162 * 1 2 3 26 26 H 1.07995 * 119.99979 * 359.97438 * 3 2 1 27 27 H 1.07998 * 119.99751 * 179.97438 * 4 3 2 28 28 H 1.07995 * 119.99997 * 179.97438 * 5 4 3 29 29 H 1.07997 * 119.99411 * 180.23073 * 6 5 4 30 30 H 1.08995 * 110.66042 * 122.96492 * 10 8 7 31 31 H 1.09002 * 110.43418 * 0.15554 * 10 8 7 32 32 H 0.97002 * 120.00750 * 180.02562 * 15 14 12 33 33 H 0.96999 * 125.40908 * 179.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2718 0.0000 0.0016 6 6 3.5806 -1.1970 0.0061 7 6 2.1981 -1.1969 -0.0005 8 6 1.4446 -2.5021 -0.0005 9 1 0.5640 -2.4342 -0.6392 10 6 1.0383 -2.9017 1.4313 11 7 1.7322 -4.1795 1.6508 12 6 1.6755 -4.9278 2.7992 13 1 2.2891 -5.8109 2.8991 14 6 0.8332 -4.5467 3.8355 15 7 0.1892 -3.4022 3.7721 16 14 0.6153 -5.6600 5.3196 17 1 1.9286 -5.8650 5.9817 18 1 -0.3282 -5.0292 6.2773 19 1 0.0727 -6.9704 4.8798 20 6 2.4239 -4.4995 0.5493 21 8 3.0890 -5.5130 0.4551 22 7 2.3169 -3.6017 -0.4391 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3634 -0.8897 -0.5143 26 1 1.6583 2.1326 -0.0004 27 1 4.1204 2.1326 0.0001 28 1 5.3517 0.0000 0.0016 29 1 4.1207 -2.1322 0.0107 30 1 -0.0411 -3.0355 1.5015 31 1 1.3794 -2.1533 2.1466 32 1 -0.3989 -3.1358 4.4960 33 1 2.7469 -3.6664 -1.3062 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259528637.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:57 Heat of formation + Delta-G solvation = 16.100422 kcal Electronic energy + Delta-G solvation = -17860.870553 eV Core-core repulsion = 15080.055757 eV Total energy + Delta-G solvation = -2780.814796 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.33408 -38.65385 -35.15741 -34.01544 -32.66419 -31.20696 -30.41224 -27.53685 -26.61357 -25.08632 -22.75379 -21.44572 -20.18952 -20.06152 -17.35867 -16.48349 -15.98675 -15.48271 -15.05940 -14.69454 -14.34674 -13.94589 -13.58320 -13.10236 -12.88931 -12.69358 -12.65049 -12.22855 -11.92532 -11.72238 -11.51550 -11.08981 -11.00272 -10.75784 -10.68058 -10.38445 -10.20843 -9.07381 -8.83432 -8.56395 -8.38553 -8.22891 -7.75448 -6.27000 -3.73840 1.58768 1.65212 3.24291 3.27688 3.31290 3.88763 4.03707 4.29493 4.35196 4.96630 5.06230 5.13659 5.26612 5.30050 5.41441 5.52390 5.55854 5.68942 5.82960 5.93908 5.97568 6.07641 6.28238 6.39940 6.60577 6.71055 6.76321 6.90528 7.03213 7.22042 7.29911 7.57359 8.03857 8.26293 8.65858 9.26874 9.45171 10.20776 10.83145 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025372 B = 0.007562 C = 0.006703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.316139 B = 3701.977554 C = 4176.348167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.075 4.075 3 C -0.125 4.125 4 C -0.124 4.124 5 C -0.129 4.129 6 C -0.097 4.097 7 C -0.084 4.084 8 C 0.146 3.854 9 H 0.084 0.916 10 C 0.147 3.853 11 N -0.468 5.468 12 C -0.277 4.277 13 H 0.102 0.898 14 C 0.023 3.977 15 N -0.900 5.900 16 Si 0.932 3.068 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.274 1.274 20 C 0.649 3.351 21 O -0.628 6.628 22 N -0.751 5.751 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.124 0.876 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.267 0.733 33 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.045 10.815 -6.682 12.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.075 4.075 3 C -0.143 4.143 4 C -0.142 4.142 5 C -0.147 4.147 6 C -0.116 4.116 7 C -0.085 4.085 8 C 0.039 3.961 9 H 0.102 0.898 10 C 0.023 3.977 11 N -0.192 5.192 12 C -0.405 4.405 13 H 0.120 0.880 14 C -0.178 4.178 15 N -0.542 5.542 16 Si 0.759 3.241 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.200 1.200 20 C 0.350 3.650 21 O -0.512 6.512 22 N -0.413 5.413 23 H 0.097 0.903 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.136 0.864 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.142 0.858 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.099 10.298 -6.371 12.110 hybrid contribution 0.046 -0.197 0.431 0.476 sum 0.146 10.101 -5.940 11.719 Atomic orbital electron populations 1.20873 0.91180 1.02393 1.03083 1.19690 0.96098 0.92315 0.99425 1.20921 0.94170 0.97160 1.02027 1.21043 0.94338 0.97710 1.01156 1.21081 0.99587 0.92553 1.01495 1.21055 0.93820 0.98285 0.98395 1.20075 0.94056 0.94420 0.99961 1.21094 0.91941 0.84431 0.98677 0.89800 1.22115 0.98646 0.87465 0.89492 1.42756 1.44598 1.20105 1.11738 1.19377 1.23162 1.07289 0.90631 0.87987 1.25165 0.96537 0.96863 0.99189 1.69855 1.30361 1.20096 1.33857 0.85894 0.78212 0.79698 0.80255 1.20047 1.20976 1.19999 1.15864 0.83681 0.83872 0.81552 1.90761 1.49138 1.28406 1.82931 1.45064 1.55405 1.23593 1.17229 0.90331 0.91995 0.91193 0.86397 0.86612 0.86520 0.85822 0.89844 0.90111 0.92249 0.74756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 9.60 36.01 0.35 -1.12 16 2 C -0.07 -1.09 5.88 -104.63 -0.62 -1.70 16 3 C -0.12 -1.64 9.70 -39.58 -0.38 -2.02 16 4 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 5 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 6 C -0.10 -1.62 9.36 -39.58 -0.37 -1.99 16 7 C -0.08 -1.39 4.95 -104.62 -0.52 -1.91 16 8 C 0.15 2.65 3.35 -68.20 -0.23 2.42 16 9 H 0.08 1.34 6.40 -51.93 -0.33 1.01 16 10 C 0.15 3.33 5.30 -3.16 -0.02 3.31 16 11 N -0.47 -12.44 3.07 -119.60 -0.37 -12.81 16 12 C -0.28 -7.88 9.92 -14.92 -0.15 -8.03 16 13 H 0.10 2.99 7.68 -52.49 -0.40 2.59 16 14 C 0.02 0.62 5.48 -17.47 -0.10 0.52 16 15 N -0.90 -23.82 10.39 55.49 0.58 -23.24 16 16 Si 0.93 21.02 29.56 -169.99 -5.02 16.00 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C 0.65 16.67 8.55 -88.39 -0.76 15.92 16 21 O -0.63 -18.36 17.53 5.29 0.09 -18.27 16 22 N -0.75 -14.97 4.69 -59.33 -0.28 -15.24 16 23 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 24 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 25 H 0.07 0.84 6.12 -51.93 -0.32 0.52 16 26 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 27 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 28 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.12 2.20 7.17 -52.49 -0.38 1.83 16 30 H 0.08 1.94 7.41 -51.93 -0.38 1.56 16 31 H 0.08 1.96 7.20 -51.93 -0.37 1.59 16 32 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 33 H 0.41 7.09 8.96 -40.82 -0.37 6.73 16 LS Contribution 278.41 15.07 4.20 4.20 Total: -1.00 -31.81 278.41 -8.19 -40.00 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -3.80 Total: 8.21 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -3.58 Total: 1.15 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.07 Total: -51.30 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.09 Total: -18.27 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.81 -8.19 -40.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259528637.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.102 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds