Wall clock time and date at job start Mon Mar 30 2020 03:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 119.99969 * 2 1 4 4 C 1.38216 * 119.99894 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00367 * 359.97438 * 4 3 2 6 6 C 1.38218 * 119.99418 * 359.81151 * 5 4 3 7 7 C 1.38210 * 120.00040 * 180.02562 * 2 1 3 8 8 C 1.50701 * 120.00199 * 359.97438 * 7 2 1 9 9 H 1.09000 * 110.48984 * 38.74723 * 8 7 2 10 10 C 1.54108 * 110.87935 * 276.08966 * 8 7 2 11 11 N 1.47056 * 103.86190 * 241.61627 * 10 8 7 12 12 C 1.37188 * 125.40843 * 179.86594 * 11 10 8 13 13 H 1.08000 * 119.99795 * 185.37190 * 12 11 10 14 14 C 1.38874 * 120.00280 * 5.10708 * 12 11 10 15 15 N 1.31472 * 120.00068 * 353.36352 * 14 12 11 16 16 Si 1.86804 * 120.00116 * 173.36326 * 14 12 11 17 17 H 1.48500 * 109.46851 * 60.00168 * 16 14 12 18 18 H 1.48502 * 109.46869 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47066 * 299.99792 * 16 14 12 20 20 C 1.33946 * 109.17957 * 359.60580 * 11 10 8 21 21 O 1.21585 * 123.04530 * 180.23923 * 20 11 10 22 22 N 1.33957 * 113.91528 * 0.26418 * 20 11 10 23 23 H 1.09001 * 109.47090 * 269.97144 * 1 2 3 24 24 H 1.09002 * 109.47404 * 29.97446 * 1 2 3 25 25 H 1.09003 * 109.47190 * 149.97162 * 1 2 3 26 26 H 1.07995 * 119.99979 * 359.97438 * 3 2 1 27 27 H 1.07998 * 119.99751 * 179.97438 * 4 3 2 28 28 H 1.07995 * 119.99997 * 179.97438 * 5 4 3 29 29 H 1.07997 * 119.99411 * 180.23073 * 6 5 4 30 30 H 1.08995 * 110.66042 * 122.96492 * 10 8 7 31 31 H 1.09002 * 110.43418 * 0.15554 * 10 8 7 32 32 H 0.97002 * 120.00750 * 180.02562 * 15 14 12 33 33 H 0.96999 * 125.40908 * 179.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2718 0.0000 0.0016 6 6 3.5806 -1.1970 0.0061 7 6 2.1981 -1.1969 -0.0005 8 6 1.4446 -2.5021 -0.0005 9 1 0.5640 -2.4342 -0.6392 10 6 1.0383 -2.9017 1.4313 11 7 1.7322 -4.1795 1.6508 12 6 1.6755 -4.9278 2.7992 13 1 2.2891 -5.8109 2.8991 14 6 0.8332 -4.5467 3.8355 15 7 0.1892 -3.4022 3.7721 16 14 0.6153 -5.6600 5.3196 17 1 1.9286 -5.8650 5.9817 18 1 -0.3282 -5.0292 6.2773 19 1 0.0727 -6.9704 4.8798 20 6 2.4239 -4.4995 0.5493 21 8 3.0890 -5.5130 0.4551 22 7 2.3169 -3.6017 -0.4391 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3634 -0.8897 -0.5143 26 1 1.6583 2.1326 -0.0004 27 1 4.1204 2.1326 0.0001 28 1 5.3517 0.0000 0.0016 29 1 4.1207 -2.1322 0.0107 30 1 -0.0411 -3.0355 1.5015 31 1 1.3794 -2.1533 2.1466 32 1 -0.3989 -3.1358 4.4960 33 1 2.7469 -3.6664 -1.3062 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259528637.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:57 Heat of formation + Delta-G solvation = -3.920326 kcal Electronic energy + Delta-G solvation = -17861.738718 eV Core-core repulsion = 15080.055757 eV Total energy + Delta-G solvation = -2781.682961 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.02754 -40.00783 -37.12579 -35.89504 -33.80305 -33.10265 -31.83409 -29.17836 -27.76247 -26.97377 -24.30342 -22.70205 -21.97607 -21.46049 -19.33376 -17.85103 -17.74259 -17.31113 -16.57788 -16.16691 -15.88927 -15.53804 -15.04645 -14.65147 -14.54536 -14.13831 -13.99934 -13.63393 -13.47292 -13.13454 -12.96268 -12.77955 -12.64477 -12.32557 -12.12205 -11.87261 -11.85675 -11.09468 -10.95084 -10.22274 -9.72510 -9.63302 -9.44316 -8.32129 -5.87764 0.45030 0.52935 1.42037 1.44039 1.53198 2.13533 2.30603 2.50386 2.86987 3.17067 3.49545 3.83014 3.90850 3.99695 4.13548 4.19364 4.32570 4.54716 4.71744 4.74961 4.90670 4.94301 4.99870 5.15602 5.18593 5.33328 5.40869 5.45160 5.63028 5.66576 5.78356 6.15841 6.18429 6.36585 6.67350 7.22826 7.42394 8.18315 8.75712 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025372 B = 0.007562 C = 0.006703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.316139 B = 3701.977554 C = 4176.348167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.079 4.079 3 C -0.123 4.123 4 C -0.117 4.117 5 C -0.136 4.136 6 C -0.120 4.120 7 C -0.106 4.106 8 C 0.159 3.841 9 H 0.114 0.886 10 C 0.157 3.843 11 N -0.485 5.485 12 C -0.324 4.324 13 H 0.078 0.922 14 C -0.006 4.006 15 N -0.906 5.906 16 Si 0.997 3.003 17 H -0.274 1.274 18 H -0.268 1.268 19 H -0.272 1.272 20 C 0.639 3.361 21 O -0.674 6.674 22 N -0.731 5.731 23 H 0.070 0.930 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.151 0.849 27 H 0.150 0.850 28 H 0.134 0.866 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.274 0.726 33 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.899 13.239 -6.731 14.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.080 4.080 3 C -0.141 4.141 4 C -0.135 4.135 5 C -0.154 4.154 6 C -0.139 4.139 7 C -0.107 4.107 8 C 0.053 3.947 9 H 0.131 0.869 10 C 0.034 3.966 11 N -0.209 5.209 12 C -0.451 4.451 13 H 0.096 0.904 14 C -0.207 4.207 15 N -0.546 5.546 16 Si 0.820 3.180 17 H -0.199 1.199 18 H -0.192 1.192 19 H -0.198 1.198 20 C 0.340 3.660 21 O -0.561 6.561 22 N -0.393 5.393 23 H 0.089 0.911 24 H 0.109 0.891 25 H 0.088 0.912 26 H 0.168 0.832 27 H 0.167 0.833 28 H 0.152 0.848 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -0.772 12.782 -6.459 14.342 hybrid contribution 0.319 -0.836 0.450 1.002 sum -0.453 11.946 -6.009 13.380 Atomic orbital electron populations 1.20914 0.89714 1.03894 1.02947 1.19969 0.97291 0.92012 0.98702 1.21344 0.94510 0.97804 1.00441 1.21467 0.94624 0.98384 0.99039 1.21326 1.00652 0.92277 1.01143 1.21022 0.94086 0.98483 1.00291 1.19939 0.94047 0.94172 1.02538 1.21096 0.92810 0.84610 0.96188 0.86905 1.21982 0.97506 0.85300 0.91858 1.42956 1.45106 1.21265 1.11599 1.19394 1.25078 1.08067 0.92551 0.90401 1.25974 0.95336 0.98100 1.01245 1.69958 1.29564 1.20478 1.34591 0.84945 0.78340 0.77878 0.76833 1.19886 1.19185 1.19778 1.16160 0.83318 0.84097 0.82424 1.90699 1.50931 1.30575 1.83932 1.44818 1.55082 1.22823 1.16586 0.91150 0.89073 0.91215 0.83153 0.83254 0.84830 0.88203 0.90931 0.92237 0.91610 0.73104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.60 71.24 0.68 -1.93 16 2 C -0.08 -2.12 5.88 -19.87 -0.12 -2.24 16 3 C -0.12 -2.77 9.70 22.27 0.22 -2.56 16 4 C -0.12 -2.62 10.05 22.27 0.22 -2.40 16 5 C -0.14 -3.65 10.05 22.27 0.22 -3.43 16 6 C -0.12 -3.99 9.36 22.27 0.21 -3.78 16 7 C -0.11 -3.43 4.95 -19.87 -0.10 -3.53 16 8 C 0.16 5.77 3.35 44.52 0.15 5.92 16 9 H 0.11 3.45 6.40 -2.39 -0.02 3.43 16 10 C 0.16 7.26 5.30 86.65 0.46 7.72 16 11 N -0.49 -26.83 3.07 -651.04 -2.00 -28.83 16 12 C -0.32 -19.13 9.92 84.01 0.83 -18.29 16 13 H 0.08 4.84 7.68 -2.91 -0.02 4.82 16 14 C -0.01 -0.34 5.48 84.90 0.47 0.12 16 15 N -0.91 -47.99 10.39 21.65 0.22 -47.77 16 16 Si 1.00 43.13 29.56 68.60 2.03 45.16 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 C 0.64 34.18 8.55 179.57 1.54 35.72 16 21 O -0.67 -41.26 17.53 -3.98 -0.07 -41.33 16 22 N -0.73 -29.72 4.69 -460.33 -2.16 -31.88 16 23 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 25 H 0.07 1.52 6.12 -2.39 -0.01 1.50 16 26 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 27 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 28 H 0.13 3.02 8.06 -2.91 -0.02 2.99 16 29 H 0.10 3.71 7.17 -2.91 -0.02 3.68 16 30 H 0.07 3.44 7.41 -2.39 -0.02 3.42 16 31 H 0.06 2.97 7.20 -2.39 -0.02 2.95 16 32 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 33 H 0.43 14.85 8.96 -92.71 -0.83 14.02 16 Total: -1.00 -71.09 278.41 3.11 -67.98 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.30 Total: 25.35 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 4.78 Total: 11.32 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -3.93 Total: -108.48 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -0.07 Total: -41.33 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -71.09 3.11 -67.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259528637.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.064 kcal (2) G-P(sol) polarization free energy of solvation -71.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds