Wall clock time and date at job start Mon Mar 30 2020 04:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37901 * 125.07384 * 2 1 4 4 C 1.39101 * 133.35989 * 0.02562 * 3 2 1 5 5 C 1.37683 * 119.99870 * 179.97438 * 4 3 2 6 6 C 1.39263 * 120.61861 * 359.97438 * 5 4 3 7 7 O 1.35985 * 119.86788 * 180.02562 * 6 5 4 8 8 C 1.38048 * 120.26993 * 0.02562 * 6 5 4 9 9 C 1.39676 * 119.60160 * 359.95543 * 8 6 5 10 10 C 1.46487 * 133.93845 * 180.32935 * 9 8 6 11 11 C 1.34249 * 107.02196 * 180.13659 * 10 9 8 12 12 C 1.50697 * 125.03018 * 179.85985 * 11 10 9 13 13 H 1.09001 * 109.47066 * 204.69877 * 12 11 10 14 14 N 1.46893 * 109.47621 * 324.69679 * 12 11 10 15 15 C 1.50706 * 109.47178 * 84.70084 * 12 11 10 16 16 H 1.07998 * 119.99629 * 359.97438 * 15 12 11 17 17 C 1.37875 * 119.99955 * 180.02562 * 15 12 11 18 18 N 1.31515 * 119.99932 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99908 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47233 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47364 * 119.99503 * 19 17 15 22 22 H 1.48500 * 109.46997 * 239.99827 * 19 17 15 23 23 H 1.09007 * 109.47186 * 269.97746 * 1 2 3 24 24 H 1.09007 * 109.47389 * 29.97265 * 1 2 3 25 25 H 1.08996 * 109.47571 * 149.97737 * 1 2 3 26 26 H 1.08001 * 120.00200 * 0.02562 * 4 3 2 27 27 H 1.07994 * 119.69105 * 180.02562 * 5 4 3 28 28 H 0.96701 * 114.00106 * 89.99650 * 7 6 5 29 29 H 1.07998 * 120.20121 * 179.97438 * 8 6 5 30 30 H 1.07999 * 126.49348 * 359.97438 * 10 9 8 31 31 H 1.00899 * 110.99958 * 59.99981 * 14 12 11 32 32 H 1.00900 * 111.00360 * 183.95344 * 14 12 11 33 33 H 0.97003 * 119.99476 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2574 1.1286 0.0000 4 6 1.9785 2.4914 0.0005 5 6 3.0087 3.4048 0.0008 6 6 4.3345 2.9787 0.0013 7 8 5.3401 3.8942 0.0022 8 6 4.6322 1.6307 0.0009 9 6 3.5951 0.6951 0.0009 10 6 3.5470 -0.7689 0.0066 11 6 2.2511 -1.1196 0.0003 12 6 1.7384 -2.5366 0.0000 13 1 0.7391 -2.5613 -0.4348 14 7 2.6388 -3.3831 -0.7941 15 6 1.6833 -3.0512 1.4154 16 1 1.9894 -2.4158 2.2332 17 6 1.2431 -4.3336 1.6660 18 7 0.8709 -5.1075 0.6699 19 14 1.1755 -4.9717 3.4203 20 1 1.6451 -3.9135 4.3504 21 1 -0.2218 -5.3439 3.7583 22 1 2.0502 -6.1651 3.5470 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8903 -0.5134 25 1 -0.3634 -0.8897 -0.5141 26 1 0.9539 2.8329 0.0013 27 1 2.7865 4.4617 0.0016 28 1 5.6304 4.1587 0.8859 29 1 5.6608 1.3015 0.0008 30 1 4.3936 -1.4394 0.0119 31 1 3.5722 -3.3769 -0.4111 32 1 2.2826 -4.3246 -0.8634 33 1 0.5609 -6.0095 0.8464 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259609574.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:18 Heat of formation + Delta-G solvation = 12.001260 kcal Electronic energy + Delta-G solvation = -17345.675559 eV Core-core repulsion = 14564.683009 eV Total energy + Delta-G solvation = -2780.992549 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.81135 -38.24783 -35.51781 -34.28637 -32.36406 -31.22697 -29.33727 -27.94356 -26.04480 -25.47706 -23.19797 -21.22832 -21.08545 -18.77626 -17.85063 -16.67769 -16.56469 -15.76228 -15.04683 -14.68916 -14.61341 -14.18048 -13.81172 -13.19269 -12.91035 -12.78675 -12.42361 -12.20249 -12.13292 -11.76305 -11.31502 -11.24569 -11.04792 -10.88771 -10.47941 -10.17168 -10.02280 -9.81796 -9.15935 -8.78477 -7.54079 -7.30523 -6.98545 -6.22685 -4.40618 1.52373 1.87533 3.13354 3.22662 3.26798 3.39083 3.48879 4.13324 4.24427 4.56703 4.99652 5.06802 5.21498 5.33319 5.56441 5.65823 5.70493 5.87552 5.93769 6.10148 6.23254 6.39551 6.47110 6.63893 6.76098 6.90296 6.94677 7.16343 7.51646 7.62421 7.76476 7.90472 7.98935 8.02174 8.52048 8.78479 8.99127 9.32412 10.74391 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.033818 B = 0.005776 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.759552 B = 4846.164348 C = 4956.858767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.482 5.482 3 C 0.080 3.920 4 C -0.111 4.111 5 C -0.140 4.140 6 C 0.060 3.940 7 O -0.502 6.502 8 C -0.102 4.102 9 C -0.083 4.083 10 C -0.226 4.226 11 C 0.155 3.845 12 C 0.263 3.737 13 H 0.047 0.953 14 N -0.845 5.845 15 C -0.545 4.545 16 H 0.059 0.941 17 C 0.068 3.932 18 N -0.892 5.892 19 Si 0.900 3.100 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.281 1.281 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.378 0.622 29 H 0.122 0.878 30 H 0.141 0.859 31 H 0.318 0.682 32 H 0.360 0.640 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.654 11.126 0.285 11.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.165 5.165 3 C -0.026 4.026 4 C -0.132 4.132 5 C -0.160 4.160 6 C 0.015 3.985 7 O -0.310 6.310 8 C -0.121 4.121 9 C -0.088 4.088 10 C -0.249 4.249 11 C 0.047 3.953 12 C 0.152 3.848 13 H 0.065 0.935 14 N -0.376 5.376 15 C -0.585 4.585 16 H 0.077 0.923 17 C -0.135 4.135 18 N -0.531 5.531 19 Si 0.727 3.273 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.207 1.207 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.105 0.895 26 H 0.134 0.866 27 H 0.140 0.860 28 H 0.232 0.768 29 H 0.140 0.860 30 H 0.158 0.842 31 H 0.128 0.872 32 H 0.177 0.823 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.988 11.344 -0.997 11.430 hybrid contribution -0.045 -0.899 2.427 2.589 sum 0.943 10.445 1.430 10.584 Atomic orbital electron populations 1.21843 0.77766 1.03456 1.02871 1.43848 1.05735 1.03973 1.62953 1.18277 0.90553 0.88162 1.05570 1.19746 0.98790 0.89159 1.05525 1.20788 0.91547 0.98916 1.04711 1.17995 0.86750 0.87471 1.06264 1.84864 1.52952 1.60319 1.32874 1.20646 0.98464 0.91152 1.01847 1.19142 0.91431 0.94082 1.04146 1.21180 0.95928 0.91051 1.16765 1.21197 0.89740 0.89364 0.94997 1.17621 0.92771 0.81856 0.92537 0.93494 1.59327 1.04995 1.18202 1.55079 1.21778 1.45017 0.98794 0.92924 0.92318 1.25005 0.94077 0.96642 0.97761 1.69743 1.43699 1.08787 1.30851 0.86403 0.77828 0.78862 0.84168 1.19682 1.20791 1.20725 0.91462 0.91171 0.89455 0.86577 0.85995 0.76786 0.85984 0.84152 0.87247 0.82339 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 10.80 59.85 0.65 1.96 16 2 N -0.48 -9.44 3.18 -117.16 -0.37 -9.81 16 3 C 0.08 1.51 6.81 -83.92 -0.57 0.94 16 4 C -0.11 -1.75 9.94 -39.46 -0.39 -2.14 16 5 C -0.14 -2.06 9.95 -39.40 -0.39 -2.45 16 6 C 0.06 0.94 6.69 -39.27 -0.26 0.68 16 7 O -0.50 -6.70 13.50 -19.69 -0.27 -6.97 16 8 C -0.10 -1.75 10.03 -39.11 -0.39 -2.14 16 9 C -0.08 -1.61 6.37 -105.14 -0.67 -2.28 16 10 C -0.23 -4.76 10.33 -37.67 -0.39 -5.14 16 11 C 0.15 3.41 5.83 -81.79 -0.48 2.93 16 12 C 0.26 6.31 2.92 -70.02 -0.20 6.10 16 13 H 0.05 1.20 6.78 -51.93 -0.35 0.85 16 14 N -0.85 -19.60 9.03 -6.65 -0.06 -19.66 16 15 C -0.55 -14.09 8.71 -34.44 -0.30 -14.39 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.07 1.75 5.38 -17.82 -0.10 1.66 16 18 N -0.89 -23.41 11.54 55.43 0.64 -22.77 16 19 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.07 0.89 8.10 -51.92 -0.42 0.47 16 25 H 0.09 1.43 6.81 -51.93 -0.35 1.07 16 26 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 27 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.38 3.17 9.06 45.56 0.41 3.58 16 29 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 30 H 0.14 2.81 7.39 -52.49 -0.39 2.43 16 31 H 0.32 7.06 7.94 -39.29 -0.31 6.75 16 32 H 0.36 8.82 7.08 -39.29 -0.28 8.54 16 33 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 283.40 15.07 4.27 4.27 Total: -1.00 -28.93 283.40 -7.23 -36.16 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -2.92 Total: 17.84 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -3.50 Total: -14.29 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.21 Total: -52.24 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.27 Total: -6.97 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.93 -7.23 -36.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259609574.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.160 kcal (2) G-P(sol) polarization free energy of solvation -28.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds