Wall clock time and date at job start Mon Mar 30 2020 04:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37901 * 125.07384 * 2 1 4 4 C 1.39101 * 133.35989 * 0.02562 * 3 2 1 5 5 C 1.37683 * 119.99870 * 179.97438 * 4 3 2 6 6 C 1.39263 * 120.61861 * 359.97438 * 5 4 3 7 7 O 1.35985 * 119.86788 * 180.02562 * 6 5 4 8 8 C 1.38048 * 120.26993 * 0.02562 * 6 5 4 9 9 C 1.39676 * 119.60160 * 359.95543 * 8 6 5 10 10 C 1.46487 * 133.93845 * 180.32935 * 9 8 6 11 11 C 1.34249 * 107.02196 * 180.13659 * 10 9 8 12 12 C 1.50697 * 125.03018 * 179.85985 * 11 10 9 13 13 H 1.09001 * 109.47066 * 204.69877 * 12 11 10 14 14 N 1.46893 * 109.47621 * 324.69679 * 12 11 10 15 15 C 1.50706 * 109.47178 * 84.70084 * 12 11 10 16 16 H 1.07998 * 119.99629 * 359.97438 * 15 12 11 17 17 C 1.37875 * 119.99955 * 180.02562 * 15 12 11 18 18 N 1.31515 * 119.99932 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99908 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47233 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47364 * 119.99503 * 19 17 15 22 22 H 1.48500 * 109.46997 * 239.99827 * 19 17 15 23 23 H 1.09007 * 109.47186 * 269.97746 * 1 2 3 24 24 H 1.09007 * 109.47389 * 29.97265 * 1 2 3 25 25 H 1.08996 * 109.47571 * 149.97737 * 1 2 3 26 26 H 1.08001 * 120.00200 * 0.02562 * 4 3 2 27 27 H 1.07994 * 119.69105 * 180.02562 * 5 4 3 28 28 H 0.96701 * 114.00106 * 89.99650 * 7 6 5 29 29 H 1.07998 * 120.20121 * 179.97438 * 8 6 5 30 30 H 1.07999 * 126.49348 * 359.97438 * 10 9 8 31 31 H 1.00899 * 110.99958 * 59.99981 * 14 12 11 32 32 H 1.00900 * 111.00360 * 183.95344 * 14 12 11 33 33 H 0.97003 * 119.99476 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2574 1.1286 0.0000 4 6 1.9785 2.4914 0.0005 5 6 3.0087 3.4048 0.0008 6 6 4.3345 2.9787 0.0013 7 8 5.3401 3.8942 0.0022 8 6 4.6322 1.6307 0.0009 9 6 3.5951 0.6951 0.0009 10 6 3.5470 -0.7689 0.0066 11 6 2.2511 -1.1196 0.0003 12 6 1.7384 -2.5366 0.0000 13 1 0.7391 -2.5613 -0.4348 14 7 2.6388 -3.3831 -0.7941 15 6 1.6833 -3.0512 1.4154 16 1 1.9894 -2.4158 2.2332 17 6 1.2431 -4.3336 1.6660 18 7 0.8709 -5.1075 0.6699 19 14 1.1755 -4.9717 3.4203 20 1 1.6451 -3.9135 4.3504 21 1 -0.2218 -5.3439 3.7583 22 1 2.0502 -6.1651 3.5470 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8903 -0.5134 25 1 -0.3634 -0.8897 -0.5141 26 1 0.9539 2.8329 0.0013 27 1 2.7865 4.4617 0.0016 28 1 5.6304 4.1587 0.8859 29 1 5.6608 1.3015 0.0008 30 1 4.3936 -1.4394 0.0119 31 1 3.5722 -3.3769 -0.4111 32 1 2.2826 -4.3246 -0.8634 33 1 0.5609 -6.0095 0.8464 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259609574.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:17 Heat of formation + Delta-G solvation = -8.252095 kcal Electronic energy + Delta-G solvation = -17346.553810 eV Core-core repulsion = 14564.683009 eV Total energy + Delta-G solvation = -2781.870801 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.21278 -39.45286 -37.02679 -35.85302 -33.86855 -33.01283 -30.60611 -29.46088 -27.90704 -26.82401 -24.86905 -22.54496 -22.49515 -20.32265 -19.04462 -18.62317 -17.96014 -17.30823 -16.44078 -16.25941 -15.98982 -15.66096 -15.07105 -14.88142 -14.62816 -14.29015 -13.76451 -13.68603 -13.47077 -13.16585 -13.05114 -12.83764 -12.78481 -12.49249 -12.07201 -11.81027 -11.61896 -11.22321 -10.76628 -10.49728 -9.31733 -8.84443 -8.43497 -8.16142 -6.44492 0.21673 0.61227 1.34252 1.38378 1.48690 1.92414 2.00841 2.36108 2.86810 3.00313 3.42236 3.81371 3.97081 4.07154 4.15276 4.38825 4.46404 4.56475 4.60595 4.70078 4.80053 4.90269 5.09881 5.15541 5.22590 5.45555 5.58376 5.60445 5.84624 5.91816 6.03920 6.35266 6.52745 6.55672 6.84231 7.00663 7.05120 7.32456 8.76363 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.033818 B = 0.005776 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.759552 B = 4846.164348 C = 4956.858767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.488 5.488 3 C 0.064 3.936 4 C -0.109 4.109 5 C -0.129 4.129 6 C 0.071 3.929 7 O -0.505 6.505 8 C -0.117 4.117 9 C -0.111 4.111 10 C -0.237 4.237 11 C 0.126 3.874 12 C 0.270 3.730 13 H 0.023 0.977 14 N -0.839 5.839 15 C -0.558 4.558 16 H 0.042 0.958 17 C 0.030 3.970 18 N -0.911 5.911 19 Si 0.960 3.040 20 H -0.277 1.277 21 H -0.276 1.276 22 H -0.276 1.276 23 H 0.070 0.930 24 H 0.106 0.894 25 H 0.073 0.927 26 H 0.147 0.853 27 H 0.157 0.843 28 H 0.404 0.596 29 H 0.130 0.870 30 H 0.137 0.863 31 H 0.322 0.678 32 H 0.351 0.649 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.617 13.405 0.879 13.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.172 5.172 3 C -0.042 4.042 4 C -0.130 4.130 5 C -0.149 4.149 6 C 0.026 3.974 7 O -0.317 6.317 8 C -0.136 4.136 9 C -0.116 4.116 10 C -0.262 4.262 11 C 0.017 3.983 12 C 0.159 3.841 13 H 0.041 0.959 14 N -0.369 5.369 15 C -0.597 4.597 16 H 0.060 0.940 17 C -0.171 4.171 18 N -0.550 5.550 19 Si 0.785 3.215 20 H -0.202 1.202 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.089 0.911 24 H 0.124 0.876 25 H 0.092 0.908 26 H 0.165 0.835 27 H 0.175 0.825 28 H 0.262 0.738 29 H 0.148 0.852 30 H 0.155 0.845 31 H 0.132 0.868 32 H 0.167 0.833 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.955 13.648 -0.393 13.687 hybrid contribution 0.052 -1.444 2.223 2.651 sum 1.007 12.205 1.830 12.382 Atomic orbital electron populations 1.22025 0.76164 1.04594 1.03467 1.43965 1.06782 1.03549 1.62862 1.18680 0.90133 0.89162 1.06195 1.20130 1.00803 0.87658 1.04395 1.21206 0.90745 1.00509 1.02402 1.18091 0.87778 0.87117 1.04450 1.84800 1.52352 1.59397 1.35132 1.20817 0.98418 0.91817 1.02553 1.19288 0.92893 0.93436 1.05956 1.21305 0.95620 0.92540 1.16689 1.20877 0.90601 0.89188 0.97618 1.17366 0.91806 0.83481 0.91406 0.95889 1.59303 1.05099 1.17499 1.54999 1.21872 1.45410 0.99033 0.93431 0.93952 1.25653 0.93676 0.96710 1.01100 1.69822 1.43857 1.09034 1.32298 0.85484 0.77957 0.78058 0.79963 1.20157 1.20153 1.20170 0.91093 0.87567 0.90788 0.83511 0.82508 0.73828 0.85240 0.84544 0.86801 0.83330 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.46 10.80 127.77 1.38 3.84 16 2 N -0.49 -19.18 3.18 -524.58 -1.67 -20.85 16 3 C 0.06 2.33 6.81 38.98 0.27 2.60 16 4 C -0.11 -3.08 9.94 22.35 0.22 -2.85 16 5 C -0.13 -3.27 9.95 22.39 0.22 -3.05 16 6 C 0.07 1.99 6.69 22.47 0.15 2.14 16 7 O -0.50 -11.58 13.50 -93.38 -1.26 -12.84 16 8 C -0.12 -3.86 10.03 22.57 0.23 -3.63 16 9 C -0.11 -4.31 6.37 -20.20 -0.13 -4.44 16 10 C -0.24 -10.32 10.33 23.51 0.24 -10.08 16 11 C 0.13 5.71 5.83 40.87 0.24 5.95 16 12 C 0.27 13.48 2.92 43.43 0.13 13.61 16 13 H 0.02 1.25 6.78 -2.39 -0.02 1.23 16 14 N -0.84 -40.37 9.03 -174.96 -1.58 -41.95 16 15 C -0.56 -29.65 8.71 25.60 0.22 -29.43 16 16 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 17 C 0.03 1.55 5.38 84.65 0.46 2.01 16 18 N -0.91 -48.49 11.54 21.45 0.25 -48.24 16 19 Si 0.96 41.84 29.54 68.60 2.03 43.87 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 23 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 24 H 0.11 2.48 8.10 -2.38 -0.02 2.46 16 25 H 0.07 2.49 6.81 -2.39 -0.02 2.47 16 26 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 27 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 28 H 0.40 5.13 9.06 -74.06 -0.67 4.45 16 29 H 0.13 3.91 8.06 -2.91 -0.02 3.88 16 30 H 0.14 5.75 7.39 -2.91 -0.02 5.73 16 31 H 0.32 14.86 7.94 -89.69 -0.71 14.15 16 32 H 0.35 17.79 7.08 -89.69 -0.63 17.15 16 33 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 Total: -1.00 -62.55 283.40 0.54 -62.01 By element: Atomic # 1 Polarization: 42.19 SS G_CDS: -0.85 Total: 41.34 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 3.63 Total: -23.34 kcal Atomic # 7 Polarization: -108.04 SS G_CDS: -3.00 Total: -111.04 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -1.26 Total: -12.84 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -62.55 0.54 -62.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259609574.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.758 kcal (2) G-P(sol) polarization free energy of solvation -62.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds