Wall clock time and date at job start Mon Mar 30 2020 04:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37895 * 125.07526 * 2 1 4 4 C 1.39111 * 133.35617 * 0.03229 * 3 2 1 5 5 C 1.37677 * 119.99374 * 179.97438 * 4 3 2 6 6 C 1.39265 * 120.62162 * 0.02562 * 5 4 3 7 7 O 1.35993 * 119.86668 * 179.97438 * 6 5 4 8 8 C 1.38041 * 120.27270 * 359.97438 * 6 5 4 9 9 C 1.39680 * 119.59890 * 359.73851 * 8 6 5 10 10 C 1.46496 * 133.93854 * 179.60792 * 9 8 6 11 11 C 1.34245 * 107.02231 * 180.46031 * 10 9 8 12 12 C 1.50702 * 125.02936 * 180.25274 * 11 10 9 13 13 H 1.09000 * 109.46699 * 155.24147 * 12 11 10 14 14 N 1.46896 * 109.47381 * 35.23470 * 12 11 10 15 15 C 1.50700 * 109.46616 * 275.23290 * 12 11 10 16 16 H 1.08000 * 120.00538 * 0.02562 * 15 12 11 17 17 C 1.37881 * 119.99472 * 180.02562 * 15 12 11 18 18 N 1.31511 * 120.00132 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99857 * 180.02562 * 17 15 12 20 20 H 1.48505 * 109.46976 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47455 * 119.99543 * 19 17 15 22 22 H 1.48497 * 109.47058 * 240.00063 * 19 17 15 23 23 H 1.09006 * 109.47641 * 264.80013 * 1 2 3 24 24 H 1.09000 * 109.47484 * 24.79998 * 1 2 3 25 25 H 1.09004 * 109.47229 * 144.79904 * 1 2 3 26 26 H 1.07993 * 120.00215 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.69037 * 180.02562 * 5 4 3 28 28 H 0.96701 * 114.00091 * 89.99833 * 7 6 5 29 29 H 1.07993 * 120.20189 * 179.97438 * 8 6 5 30 30 H 1.07996 * 126.48435 * 0.71915 * 10 9 8 31 31 H 1.00904 * 111.00048 * 295.29035 * 14 12 11 32 32 H 1.00907 * 110.99771 * 59.24409 * 14 12 11 33 33 H 0.97005 * 120.00053 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2574 1.1285 0.0000 4 6 1.9784 2.4914 0.0006 5 6 3.0086 3.4048 0.0009 6 6 4.3344 2.9787 0.0002 7 8 5.3400 3.8942 0.0000 8 6 4.6322 1.6308 -0.0004 9 6 3.5951 0.6951 0.0053 10 6 3.5469 -0.7690 -0.0007 11 6 2.2510 -1.1196 -0.0002 12 6 1.7383 -2.5367 0.0001 13 1 0.7373 -2.5607 0.4308 14 7 2.6356 -3.3820 0.7989 15 6 1.6888 -3.0532 -1.4148 16 1 1.9981 -2.4190 -2.2324 17 6 1.2486 -4.3356 -1.6655 18 7 0.8715 -5.1077 -0.6700 19 14 1.1879 -4.9761 -3.4192 20 1 1.6612 -3.9192 -4.3489 21 1 2.0621 -6.1704 -3.5406 22 1 -0.2082 -5.3477 -3.7624 23 1 -0.3634 -0.0931 1.0235 24 1 -0.3634 0.9329 -0.4310 25 1 -0.3634 -0.8398 -0.5924 26 1 0.9539 2.8329 0.0016 27 1 2.7864 4.4617 0.0018 28 1 5.6312 4.1588 0.8834 29 1 5.6607 1.3016 -0.0014 30 1 4.3936 -1.4394 -0.0008 31 1 3.5505 -3.4379 0.3770 32 1 2.6954 -3.0486 1.7494 33 1 0.5621 -6.0101 -0.8463 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259609576.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:19 Heat of formation + Delta-G solvation = 18.224580 kcal Electronic energy + Delta-G solvation = -17344.888820 eV Core-core repulsion = 14564.166134 eV Total energy + Delta-G solvation = -2780.722686 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.88952 -38.31440 -35.54411 -34.13873 -32.39799 -31.36448 -29.39197 -27.93177 -26.06640 -25.52489 -23.09573 -21.27906 -21.13441 -18.87821 -17.89375 -16.64005 -16.53842 -15.57833 -15.09592 -14.72232 -14.55475 -14.25527 -13.91977 -13.71103 -12.98500 -12.60522 -12.44913 -12.25993 -12.13602 -11.88405 -11.34135 -11.21643 -10.91062 -10.86195 -10.49970 -10.17930 -9.90446 -9.33637 -9.18508 -8.56146 -7.58084 -7.33551 -7.03565 -6.00824 -4.17209 1.44502 1.80761 3.26161 3.29159 3.35555 3.37719 3.42974 4.06653 4.40202 4.49281 4.99491 5.16876 5.24273 5.28782 5.53611 5.61657 5.62572 5.79923 5.95478 6.07183 6.18031 6.21470 6.32443 6.44198 6.66207 6.81350 6.92791 7.07882 7.40652 7.71189 7.78627 7.86015 7.91552 8.02975 8.49183 8.87892 8.99737 9.52781 11.03020 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.033835 B = 0.005776 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.336023 B = 4846.329039 C = 4953.401545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.479 5.479 3 C 0.079 3.921 4 C -0.112 4.112 5 C -0.139 4.139 6 C 0.062 3.938 7 O -0.501 6.501 8 C -0.103 4.103 9 C -0.083 4.083 10 C -0.242 4.242 11 C 0.114 3.886 12 C 0.275 3.725 13 H 0.048 0.952 14 N -0.800 5.800 15 C -0.535 4.535 16 H 0.057 0.943 17 C 0.085 3.915 18 N -0.845 5.845 19 Si 0.887 3.113 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.284 1.284 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.117 0.883 27 H 0.123 0.877 28 H 0.379 0.621 29 H 0.122 0.878 30 H 0.139 0.861 31 H 0.325 0.675 32 H 0.301 0.699 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.926 12.486 3.956 13.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.163 5.163 3 C -0.027 4.027 4 C -0.132 4.132 5 C -0.159 4.159 6 C 0.016 3.984 7 O -0.310 6.310 8 C -0.122 4.122 9 C -0.088 4.088 10 C -0.265 4.265 11 C 0.004 3.996 12 C 0.163 3.837 13 H 0.066 0.934 14 N -0.325 5.325 15 C -0.574 4.574 16 H 0.075 0.925 17 C -0.122 4.122 18 N -0.479 5.479 19 Si 0.715 3.285 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.210 1.210 23 H 0.081 0.919 24 H 0.090 0.910 25 H 0.113 0.887 26 H 0.135 0.865 27 H 0.141 0.859 28 H 0.232 0.768 29 H 0.140 0.860 30 H 0.157 0.843 31 H 0.138 0.862 32 H 0.111 0.889 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.912 11.591 3.251 12.073 hybrid contribution 0.581 0.607 -0.392 0.927 sum 1.493 12.198 2.859 12.617 Atomic orbital electron populations 1.21893 0.77616 1.04055 1.02686 1.44001 1.05841 1.03946 1.62463 1.18367 0.90617 0.88330 1.05375 1.19769 0.98832 0.89199 1.05444 1.20809 0.91542 0.98984 1.04520 1.17999 0.86774 0.87466 1.06125 1.84872 1.52913 1.60289 1.32879 1.20646 0.98448 0.91192 1.01911 1.19108 0.91483 0.93947 1.04248 1.21217 0.95896 0.91462 1.17953 1.23054 0.90296 0.91352 0.94943 1.17998 0.92870 0.77693 0.95089 0.93442 1.59292 1.15297 1.55075 1.02872 1.20814 1.47275 0.99140 0.90125 0.92517 1.24941 0.94186 0.96602 0.96512 1.70111 1.40135 1.07578 1.30052 0.86635 0.77643 0.79044 0.85223 1.19803 1.20818 1.21008 0.91878 0.90969 0.88696 0.86519 0.85925 0.76763 0.86004 0.84335 0.86219 0.88887 0.93252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.48 59.85 0.63 1.85 16 2 N -0.48 -9.10 3.18 -117.16 -0.37 -9.48 16 3 C 0.08 1.46 6.81 -83.92 -0.57 0.88 16 4 C -0.11 -1.72 9.87 -39.46 -0.39 -2.11 16 5 C -0.14 -2.00 9.95 -39.40 -0.39 -2.40 16 6 C 0.06 0.94 6.69 -39.27 -0.26 0.68 16 7 O -0.50 -6.56 13.50 -19.72 -0.27 -6.83 16 8 C -0.10 -1.72 10.03 -39.12 -0.39 -2.12 16 9 C -0.08 -1.57 6.37 -105.14 -0.67 -2.24 16 10 C -0.24 -4.89 10.36 -37.66 -0.39 -5.28 16 11 C 0.11 2.41 5.79 -81.78 -0.47 1.93 16 12 C 0.27 6.47 2.67 -70.02 -0.19 6.28 16 13 H 0.05 1.20 7.44 -51.93 -0.39 0.82 16 14 N -0.80 -18.00 8.35 -6.65 -0.06 -18.05 16 15 C -0.53 -14.08 8.67 -34.44 -0.30 -14.38 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.09 2.27 5.39 -17.82 -0.10 2.18 16 18 N -0.84 -23.46 12.77 55.43 0.71 -22.75 16 19 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.07 0.92 7.82 -51.93 -0.41 0.51 16 25 H 0.09 1.59 7.66 -51.93 -0.40 1.19 16 26 H 0.12 1.49 7.88 -52.49 -0.41 1.08 16 27 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.38 3.01 9.06 45.56 0.41 3.43 16 29 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 30 H 0.14 2.65 7.51 -52.49 -0.39 2.26 16 31 H 0.33 7.10 8.12 -39.29 -0.32 6.78 16 32 H 0.30 6.05 9.02 -39.29 -0.35 5.70 16 33 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 286.57 15.07 4.32 4.32 Total: -1.00 -30.62 286.57 -7.25 -37.87 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -3.07 Total: 13.93 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -3.50 Total: -14.71 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.28 Total: -50.29 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.27 Total: -6.83 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.62 -7.25 -37.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259609576.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.094 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds