Wall clock time and date at job start Mon Mar 30 2020 04:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37895 * 125.07526 * 2 1 4 4 C 1.39111 * 133.35617 * 0.03229 * 3 2 1 5 5 C 1.37677 * 119.99374 * 179.97438 * 4 3 2 6 6 C 1.39265 * 120.62162 * 0.02562 * 5 4 3 7 7 O 1.35993 * 119.86668 * 179.97438 * 6 5 4 8 8 C 1.38041 * 120.27270 * 359.97438 * 6 5 4 9 9 C 1.39680 * 119.59890 * 359.73851 * 8 6 5 10 10 C 1.46496 * 133.93854 * 179.60792 * 9 8 6 11 11 C 1.34245 * 107.02231 * 180.46031 * 10 9 8 12 12 C 1.50702 * 125.02936 * 180.25274 * 11 10 9 13 13 H 1.09000 * 109.46699 * 155.24147 * 12 11 10 14 14 N 1.46896 * 109.47381 * 35.23470 * 12 11 10 15 15 C 1.50700 * 109.46616 * 275.23290 * 12 11 10 16 16 H 1.08000 * 120.00538 * 0.02562 * 15 12 11 17 17 C 1.37881 * 119.99472 * 180.02562 * 15 12 11 18 18 N 1.31511 * 120.00132 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99857 * 180.02562 * 17 15 12 20 20 H 1.48505 * 109.46976 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47455 * 119.99543 * 19 17 15 22 22 H 1.48497 * 109.47058 * 240.00063 * 19 17 15 23 23 H 1.09006 * 109.47641 * 264.80013 * 1 2 3 24 24 H 1.09000 * 109.47484 * 24.79998 * 1 2 3 25 25 H 1.09004 * 109.47229 * 144.79904 * 1 2 3 26 26 H 1.07993 * 120.00215 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.69037 * 180.02562 * 5 4 3 28 28 H 0.96701 * 114.00091 * 89.99833 * 7 6 5 29 29 H 1.07993 * 120.20189 * 179.97438 * 8 6 5 30 30 H 1.07996 * 126.48435 * 0.71915 * 10 9 8 31 31 H 1.00904 * 111.00048 * 295.29035 * 14 12 11 32 32 H 1.00907 * 110.99771 * 59.24409 * 14 12 11 33 33 H 0.97005 * 120.00053 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2574 1.1285 0.0000 4 6 1.9784 2.4914 0.0006 5 6 3.0086 3.4048 0.0009 6 6 4.3344 2.9787 0.0002 7 8 5.3400 3.8942 0.0000 8 6 4.6322 1.6308 -0.0004 9 6 3.5951 0.6951 0.0053 10 6 3.5469 -0.7690 -0.0007 11 6 2.2510 -1.1196 -0.0002 12 6 1.7383 -2.5367 0.0001 13 1 0.7373 -2.5607 0.4308 14 7 2.6356 -3.3820 0.7989 15 6 1.6888 -3.0532 -1.4148 16 1 1.9981 -2.4190 -2.2324 17 6 1.2486 -4.3356 -1.6655 18 7 0.8715 -5.1077 -0.6700 19 14 1.1879 -4.9761 -3.4192 20 1 1.6612 -3.9192 -4.3489 21 1 2.0621 -6.1704 -3.5406 22 1 -0.2082 -5.3477 -3.7624 23 1 -0.3634 -0.0931 1.0235 24 1 -0.3634 0.9329 -0.4310 25 1 -0.3634 -0.8398 -0.5924 26 1 0.9539 2.8329 0.0016 27 1 2.7864 4.4617 0.0018 28 1 5.6312 4.1588 0.8834 29 1 5.6607 1.3016 -0.0014 30 1 4.3936 -1.4394 -0.0008 31 1 3.5505 -3.4379 0.3770 32 1 2.6954 -3.0486 1.7494 33 1 0.5621 -6.0101 -0.8463 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259609576.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:19 Heat of formation + Delta-G solvation = -3.729674 kcal Electronic energy + Delta-G solvation = -17345.840828 eV Core-core repulsion = 14564.166134 eV Total energy + Delta-G solvation = -2781.674694 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.25605 -39.48995 -36.96476 -35.72173 -33.93607 -33.12882 -30.62960 -29.40386 -27.93931 -26.83769 -24.76045 -22.56639 -22.52646 -20.39781 -19.04476 -18.52993 -17.94466 -17.02418 -16.57387 -16.15221 -16.04156 -15.91995 -15.23501 -15.08867 -14.58478 -14.15882 -13.81038 -13.73541 -13.49099 -13.16146 -13.03315 -12.75240 -12.66789 -12.51981 -12.04276 -11.77429 -11.26981 -11.18917 -10.61318 -10.54884 -9.19420 -8.82474 -8.46250 -8.04121 -6.26889 0.16930 0.57660 1.40029 1.43614 1.53253 1.84276 2.01777 2.45442 2.83083 3.19748 3.38152 3.78116 3.95044 4.06107 4.17553 4.37270 4.43131 4.44601 4.56506 4.70633 4.78087 4.81087 5.02288 5.10887 5.19600 5.43600 5.56029 5.69987 5.81048 5.89344 6.07503 6.28087 6.49583 6.59203 6.98180 6.98922 7.17812 7.46148 8.98492 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.033835 B = 0.005776 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.336023 B = 4846.329039 C = 4953.401545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.486 5.486 3 C 0.063 3.937 4 C -0.110 4.110 5 C -0.129 4.129 6 C 0.072 3.928 7 O -0.505 6.505 8 C -0.118 4.118 9 C -0.110 4.110 10 C -0.249 4.249 11 C 0.089 3.911 12 C 0.285 3.715 13 H 0.023 0.977 14 N -0.808 5.808 15 C -0.544 4.544 16 H 0.040 0.960 17 C 0.043 3.957 18 N -0.873 5.873 19 Si 0.947 3.053 20 H -0.277 1.277 21 H -0.280 1.280 22 H -0.277 1.277 23 H 0.077 0.923 24 H 0.104 0.896 25 H 0.073 0.927 26 H 0.147 0.853 27 H 0.157 0.843 28 H 0.405 0.595 29 H 0.129 0.871 30 H 0.137 0.863 31 H 0.327 0.673 32 H 0.314 0.686 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.993 14.861 3.736 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.169 5.169 3 C -0.043 4.043 4 C -0.131 4.131 5 C -0.149 4.149 6 C 0.026 3.974 7 O -0.317 6.317 8 C -0.137 4.137 9 C -0.115 4.115 10 C -0.273 4.273 11 C -0.022 4.022 12 C 0.173 3.827 13 H 0.041 0.959 14 N -0.335 5.335 15 C -0.583 4.583 16 H 0.058 0.942 17 C -0.162 4.162 18 N -0.509 5.509 19 Si 0.773 3.227 20 H -0.201 1.201 21 H -0.205 1.205 22 H -0.202 1.202 23 H 0.096 0.904 24 H 0.122 0.878 25 H 0.091 0.909 26 H 0.165 0.835 27 H 0.175 0.825 28 H 0.262 0.738 29 H 0.147 0.853 30 H 0.155 0.845 31 H 0.140 0.860 32 H 0.125 0.875 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.980 13.992 3.050 14.354 hybrid contribution 0.648 0.060 -0.281 0.709 sum 1.628 14.052 2.769 14.414 Atomic orbital electron populations 1.22053 0.76086 1.04814 1.03544 1.44098 1.06842 1.03579 1.62352 1.18747 0.90228 0.89294 1.06043 1.20145 1.00789 0.87773 1.04343 1.21217 0.90771 1.00543 1.02323 1.18100 0.87776 0.87143 1.04357 1.84807 1.52333 1.59402 1.35189 1.20816 0.98420 0.91844 1.02631 1.19267 0.92857 0.93420 1.05999 1.21337 0.95590 0.92785 1.17616 1.22533 0.91032 0.90991 0.97621 1.17566 0.91982 0.79538 0.93588 0.95877 1.59139 1.15214 1.55487 1.03610 1.20977 1.46938 0.99165 0.91192 0.94203 1.25577 0.93930 0.96800 0.99844 1.70206 1.41104 1.07821 1.31736 0.85702 0.77809 0.78154 0.81008 1.20149 1.20534 1.20239 0.90432 0.87798 0.90858 0.83537 0.82536 0.73756 0.85287 0.84534 0.86008 0.87509 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.31 10.48 127.77 1.34 3.65 16 2 N -0.49 -18.40 3.18 -524.58 -1.67 -20.07 16 3 C 0.06 2.22 6.81 38.98 0.27 2.49 16 4 C -0.11 -3.02 9.87 22.35 0.22 -2.80 16 5 C -0.13 -3.19 9.95 22.38 0.22 -2.97 16 6 C 0.07 1.96 6.69 22.47 0.15 2.11 16 7 O -0.51 -11.34 13.50 -93.47 -1.26 -12.60 16 8 C -0.12 -3.79 10.03 22.57 0.23 -3.56 16 9 C -0.11 -4.16 6.37 -20.20 -0.13 -4.29 16 10 C -0.25 -10.32 10.36 23.51 0.24 -10.08 16 11 C 0.09 3.87 5.79 40.87 0.24 4.11 16 12 C 0.28 13.89 2.67 43.42 0.12 14.00 16 13 H 0.02 1.23 7.44 -2.39 -0.02 1.22 16 14 N -0.81 -37.48 8.35 -174.96 -1.46 -38.95 16 15 C -0.54 -29.47 8.67 25.60 0.22 -29.25 16 16 H 0.04 2.24 7.74 -2.91 -0.02 2.22 16 17 C 0.04 2.34 5.39 84.66 0.46 2.80 16 18 N -0.87 -49.34 12.77 21.45 0.27 -49.07 16 19 Si 0.95 43.14 29.54 68.60 2.03 45.16 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 23 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 24 H 0.10 2.42 7.82 -2.39 -0.02 2.40 16 25 H 0.07 2.52 7.66 -2.39 -0.02 2.51 16 26 H 0.15 3.09 7.88 -2.91 -0.02 3.06 16 27 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 28 H 0.40 4.81 9.06 -74.06 -0.67 4.14 16 29 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 30 H 0.14 5.45 7.51 -2.91 -0.02 5.43 16 31 H 0.33 14.78 8.12 -89.69 -0.73 14.05 16 32 H 0.31 12.99 9.02 -89.69 -0.81 12.18 16 33 H 0.26 13.92 8.31 -92.70 -0.77 13.15 16 Total: -1.00 -65.99 286.57 0.43 -65.56 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -1.05 Total: 33.76 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: 3.57 Total: -23.79 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -2.86 Total: -108.09 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -1.26 Total: -12.60 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -65.99 0.43 -65.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259609576.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.827 kcal (2) G-P(sol) polarization free energy of solvation -65.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds