Wall clock time and date at job start Mon Mar 30 2020 03:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99894 * 2 1 4 4 H 1.48508 * 109.46753 * 240.00001 * 3 2 1 5 5 H 1.48496 * 109.47287 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47263 * 120.00249 * 3 2 1 7 7 C 1.37876 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00334 * 189.64524 * 7 2 1 9 9 C 1.50702 * 119.99651 * 9.64368 * 7 2 1 10 10 H 1.09004 * 109.46724 * 185.36801 * 9 7 2 11 11 N 1.46505 * 109.47014 * 305.36277 * 9 7 2 12 12 C 1.34783 * 120.00036 * 275.00204 * 11 9 7 13 13 O 1.21277 * 119.99504 * 0.02562 * 12 11 9 14 14 C 1.50698 * 119.99688 * 179.97438 * 12 11 9 15 15 C 1.52997 * 117.50206 * 248.61860 * 14 12 11 16 16 C 1.53002 * 60.00350 * 252.51669 * 15 14 12 17 17 C 1.50698 * 109.47575 * 65.36247 * 9 7 2 18 18 C 1.38651 * 120.78866 * 273.53140 * 17 9 7 19 19 C 1.38202 * 119.15827 * 179.97438 * 18 17 9 20 20 N 1.31870 * 120.76981 * 359.97438 * 19 18 17 21 21 C 1.31876 * 121.72397 * 0.02562 * 20 19 18 22 22 C 1.38205 * 120.76231 * 0.02562 * 21 20 19 23 23 H 0.97005 * 119.99704 * 359.97438 * 1 2 3 24 24 H 0.96999 * 120.00009 * 94.99905 * 11 9 7 25 25 H 1.08996 * 115.55287 * 34.33381 * 14 12 11 26 26 H 1.09007 * 117.49783 * 0.02562 * 15 14 12 27 27 H 1.08995 * 117.49711 * 145.02201 * 15 14 12 28 28 H 1.08998 * 117.49340 * 252.51097 * 16 15 14 29 29 H 1.08997 * 117.51826 * 107.48037 * 16 15 14 30 30 H 1.07999 * 120.42026 * 0.25350 * 18 17 9 31 31 H 1.08001 * 119.61974 * 179.97438 * 19 18 17 32 32 H 1.07998 * 119.61961 * 179.97438 * 21 20 19 33 33 H 1.08005 * 120.42115 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0730 -1.2007 0.1562 9 6 1.2670 -2.4898 -0.2198 10 1 1.9551 -3.3255 -0.0923 11 7 0.1772 -2.6019 0.7529 12 6 0.4197 -3.0977 1.9826 13 8 1.5402 -3.4505 2.2839 14 6 -0.7012 -3.2125 2.9832 15 6 -0.6566 -2.2901 4.2031 16 6 -0.3619 -3.7831 4.3618 17 6 0.6992 -2.5148 -1.6154 18 6 -0.5411 -1.9576 -1.8871 19 6 -1.0293 -1.9988 -3.1794 20 7 -0.3301 -2.5588 -4.1472 21 6 0.8527 -3.0983 -3.9254 22 6 1.4046 -3.0955 -2.6583 23 1 -0.4850 0.8401 0.0004 24 1 -0.7189 -2.3194 0.5120 25 1 -1.6803 -3.4502 2.5673 26 1 0.1835 -1.5999 4.2817 27 1 -1.6063 -1.9207 4.5897 28 1 -1.1179 -4.3958 4.8528 29 1 0.6720 -4.0756 4.5447 30 1 -1.1163 -1.4933 -1.0998 31 1 -1.9947 -1.5675 -3.3993 32 1 1.3959 -3.5483 -4.7432 33 1 2.3734 -3.5393 -2.4829 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259686983.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:14 Heat of formation + Delta-G solvation = 23.052861 kcal Electronic energy + Delta-G solvation = -17701.077571 eV Core-core repulsion = 14920.564255 eV Total energy + Delta-G solvation = -2780.513316 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.46663 -38.68015 -35.87791 -34.62629 -31.98250 -31.25137 -30.25900 -27.52149 -24.28812 -23.05034 -22.50457 -22.04103 -20.61964 -19.06008 -16.96720 -16.74397 -15.92299 -15.24706 -14.77947 -14.71705 -14.47522 -14.10099 -13.53282 -13.07879 -12.96213 -12.76751 -12.38096 -11.82351 -11.74171 -11.21234 -11.11639 -11.00628 -10.69554 -10.22871 -10.18068 -9.98669 -9.87091 -9.06995 -8.73087 -8.69721 -8.49846 -8.23266 -7.62409 -6.32290 -4.39683 2.00033 2.23959 3.18884 3.22562 3.27283 3.48278 4.16350 4.22879 4.53401 4.72203 4.99641 5.17645 5.21856 5.35367 5.41269 5.63997 5.79022 5.90562 5.93790 6.03097 6.16659 6.20910 6.38059 6.48384 6.48964 6.58862 6.86123 6.99262 7.43207 7.60140 7.65176 7.84674 7.92284 8.57591 8.74507 8.85604 9.28763 9.46377 10.68606 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.017227 B = 0.009585 C = 0.007256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.993954 B = 2920.574959 C = 3857.900884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.078 3.922 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.294 3.706 10 H 0.057 0.943 11 N -0.678 5.678 12 C 0.535 3.465 13 O -0.567 6.567 14 C -0.183 4.183 15 C -0.153 4.153 16 C -0.157 4.157 17 C -0.005 4.005 18 C -0.143 4.143 19 C 0.072 3.928 20 N -0.511 5.511 21 C 0.076 3.924 22 C -0.178 4.178 23 H 0.267 0.733 24 H 0.394 0.606 25 H 0.112 0.888 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.157 0.843 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.429 -3.613 1.481 5.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.127 4.127 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.192 3.808 10 H 0.075 0.925 11 N -0.326 5.326 12 C 0.320 3.680 13 O -0.448 6.448 14 C -0.205 4.205 15 C -0.190 4.190 16 C -0.195 4.195 17 C -0.014 4.014 18 C -0.163 4.163 19 C -0.084 4.084 20 N -0.221 5.221 21 C -0.081 4.081 22 C -0.198 4.198 23 H 0.077 0.923 24 H 0.229 0.771 25 H 0.130 0.870 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.174 0.826 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.136 -3.735 0.806 5.631 hybrid contribution 0.322 1.420 0.601 1.576 sum -3.814 -2.315 1.408 4.678 Atomic orbital electron populations 1.69681 1.06108 1.27360 1.47905 1.24940 0.94909 0.99442 0.93411 0.86531 0.79800 0.82161 0.78935 1.20024 1.21039 1.20007 1.21322 0.94801 0.90145 1.49075 0.91527 1.17573 0.85310 0.97084 0.80828 0.92526 1.46328 1.13357 1.60423 1.12503 1.19278 0.88128 0.77894 0.82685 1.90580 1.23766 1.52077 1.78406 1.22243 0.99977 1.07825 0.90432 1.22806 1.03245 0.93498 0.99478 1.22861 1.03259 0.96115 0.97231 1.20873 0.92328 0.90493 0.97676 1.22492 0.97307 0.98077 0.98434 1.22595 0.98957 0.97129 0.89689 1.67492 1.07734 1.10800 1.36057 1.22375 0.92407 0.97790 0.95510 1.21848 1.01220 1.02746 0.94031 0.92336 0.77088 0.86955 0.88399 0.88655 0.88847 0.87779 0.82558 0.84298 0.84228 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.10 8.94 55.43 0.50 -20.60 16 2 C 0.08 1.96 5.19 -17.82 -0.09 1.86 16 3 Si 0.90 20.40 29.55 -169.99 -5.02 15.38 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -13.40 8.82 -34.44 -0.30 -13.70 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 C 0.29 6.94 2.47 -70.23 -0.17 6.77 16 10 H 0.06 1.39 7.52 -51.93 -0.39 1.00 16 11 N -0.68 -14.87 4.07 -56.06 -0.23 -15.09 16 12 C 0.54 11.70 7.57 -10.98 -0.08 11.61 16 13 O -0.57 -14.35 15.92 5.56 0.09 -14.26 16 14 C -0.18 -3.11 6.19 -91.77 -0.57 -3.68 16 15 C -0.15 -2.34 10.23 -26.73 -0.27 -2.62 16 16 C -0.16 -2.33 10.04 -26.73 -0.27 -2.60 16 17 C 0.00 -0.10 4.85 -104.32 -0.51 -0.60 16 18 C -0.14 -2.93 8.01 -39.44 -0.32 -3.25 16 19 C 0.07 1.38 11.18 -17.55 -0.20 1.19 16 20 N -0.51 -10.01 10.36 -13.25 -0.14 -10.15 16 21 C 0.08 1.39 11.18 -17.54 -0.20 1.20 16 22 C -0.18 -3.49 9.81 -39.44 -0.39 -3.88 16 23 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 24 H 0.39 8.13 6.11 -40.82 -0.25 7.88 16 25 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 26 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 27 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.10 1.71 7.67 -51.93 -0.40 1.31 16 30 H 0.16 3.26 4.88 -52.49 -0.26 3.01 16 31 H 0.14 2.27 8.06 -52.49 -0.42 1.84 16 32 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 33 H 0.12 2.17 8.06 -52.48 -0.42 1.75 16 LS Contribution 284.78 15.07 4.29 4.29 Total: -1.00 -28.57 284.78 -7.68 -36.25 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -3.80 Total: 11.88 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -3.36 Total: -7.70 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.13 Total: -45.85 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.09 Total: -14.26 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.57 -7.68 -36.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259686983.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.300 kcal (2) G-P(sol) polarization free energy of solvation -28.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds